Wall clock time and date at job start Mon Mar 30 2020 03:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.50704 * 109.47228 * 120.00088 * 2 1 3 5 5 O 1.20824 * 120.00059 * 100.00272 * 4 2 1 6 6 O 1.34235 * 119.99714 * 280.27820 * 4 2 1 7 7 S 1.81398 * 109.47513 * 239.99882 * 2 1 3 8 8 O 1.42098 * 109.47341 * 171.38735 * 7 2 1 9 9 C 1.81402 * 102.99562 * 55.00032 * 7 2 1 10 10 C 1.53005 * 109.46817 * 178.98354 * 9 7 2 11 11 C 1.50693 * 115.55392 * 64.91384 * 10 9 7 12 12 H 1.08000 * 120.00020 * 265.26620 * 11 10 9 13 13 C 1.37881 * 120.00265 * 85.25753 * 11 10 9 14 14 N 1.31513 * 119.99844 * 353.53348 * 13 11 10 15 15 Si 1.86802 * 120.00092 * 173.53273 * 13 11 10 16 16 H 1.48501 * 109.47116 * 89.99822 * 15 13 11 17 17 H 1.48498 * 109.47214 * 210.00231 * 15 13 11 18 18 H 1.48506 * 109.47159 * 329.99936 * 15 13 11 19 19 C 1.53002 * 117.49697 * 279.23724 * 10 9 7 20 20 C 1.53006 * 117.49791 * 210.58128 * 10 9 7 21 21 H 1.08996 * 109.46860 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47168 * 299.99794 * 1 2 3 23 23 H 1.08994 * 109.46996 * 60.00153 * 1 2 3 24 24 H 0.96701 * 116.99373 * 179.72800 * 6 4 2 25 25 H 1.09000 * 109.46980 * 298.97716 * 9 7 2 26 26 H 1.08999 * 109.47153 * 58.98596 * 9 7 2 27 27 H 0.96998 * 119.99916 * 185.09381 * 14 13 11 28 28 H 1.08995 * 117.49794 * 0.02562 * 19 10 9 29 29 H 1.09004 * 117.49551 * 145.02213 * 19 10 9 30 30 H 1.09000 * 117.49729 * 214.98287 * 20 10 9 31 31 H 1.09002 * 117.49675 * 359.97178 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4051 -1.8573 1.1560 6 8 2.0605 -0.0708 2.4103 7 16 2.1348 -0.8551 -1.4811 8 8 3.5415 -0.6839 -1.5857 9 6 1.3149 0.0375 -2.8308 10 6 1.7482 -0.5570 -4.1724 11 6 1.3253 -1.9822 -4.4188 12 1 1.9995 -2.7934 -4.1867 13 6 0.0775 -2.2508 -4.9404 14 7 -0.7904 -1.2763 -5.1040 15 14 -0.3802 -3.9986 -5.4147 16 1 -0.9938 -4.6834 -4.2486 17 1 -1.3508 -3.9686 -6.5382 18 1 0.8402 -4.7334 -5.8344 19 6 3.0982 -0.1127 -4.7390 20 6 1.7989 0.3833 -5.3784 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.3871 -0.5690 3.1720 25 1 0.2342 -0.0557 -2.7243 26 1 1.5945 1.0903 -2.7927 27 1 -1.6923 -1.4748 -5.4009 28 1 3.6779 0.6027 -4.1557 29 1 3.6803 -0.8513 -5.2902 30 1 1.5267 -0.0291 -6.3499 31 1 1.5232 1.4253 -5.2160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083855083.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:37 Heat of formation + Delta-G solvation = -108.954366 kcal Electronic energy + Delta-G solvation = -16216.060320 eV Core-core repulsion = 13397.140847 eV Total energy + Delta-G solvation = -2818.919473 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.12813 -36.60038 -36.09541 -35.12138 -33.08783 -32.02175 -27.77977 -25.42772 -25.01316 -21.59251 -21.09805 -19.36451 -18.12522 -17.10048 -16.37472 -16.02275 -15.60849 -15.06271 -14.60380 -14.02390 -13.79168 -13.56859 -13.26296 -12.79133 -12.27837 -11.93800 -11.75005 -11.58284 -11.50122 -11.28567 -10.98016 -10.83899 -10.51399 -10.42593 -10.24149 -9.92996 -9.47566 -8.90311 -8.52276 -8.21152 -7.37087 -6.12023 -4.22561 1.84112 2.28010 3.12434 3.26917 3.34813 3.37296 3.39688 4.34439 4.37237 5.04131 5.11023 5.16994 5.32011 5.35423 5.70869 5.82906 5.88205 6.14196 6.22353 6.40164 6.48162 6.53533 6.76606 6.82127 7.08377 7.39259 7.47629 7.79728 7.89922 8.31211 8.82687 9.46502 10.95585 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.007846 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.975558 B = 3567.664486 C = 3957.903040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.445 4.445 3 H 0.110 0.890 4 C 0.514 3.486 5 O -0.506 6.506 6 O -0.516 6.516 7 S 1.304 4.696 8 O -0.841 6.841 9 C -0.385 4.385 10 C 0.059 3.941 11 C -0.510 4.510 12 H 0.067 0.933 13 C 0.079 3.921 14 N -0.873 5.873 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.210 4.210 20 C -0.150 4.150 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.407 0.593 25 H 0.127 0.873 26 H 0.056 0.944 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 1.850 10.125 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.556 4.556 3 H 0.129 0.871 4 C 0.355 3.645 5 O -0.394 6.394 6 O -0.328 6.328 7 S 1.499 4.501 8 O -0.836 6.836 9 C -0.524 4.524 10 C 0.057 3.943 11 C -0.548 4.548 12 H 0.085 0.915 13 C -0.126 4.126 14 N -0.509 5.509 15 Si 0.714 3.286 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.247 4.247 20 C -0.189 4.189 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.102 0.898 24 H 0.265 0.735 25 H 0.145 0.855 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.816 1.075 9.690 9.784 hybrid contribution 0.399 1.245 0.149 1.316 sum -0.417 2.320 9.839 10.117 Atomic orbital electron populations 1.21416 0.88279 1.04304 1.03857 1.28154 1.06293 1.11155 1.09987 0.87124 1.22442 0.73614 0.84666 0.83769 1.90738 1.44367 1.18391 1.85878 1.84553 1.79334 1.49496 1.19428 1.72247 0.88639 1.06199 0.82996 1.92963 1.26844 1.80398 1.83432 1.27241 1.10310 1.05162 1.09735 1.18266 0.93562 0.94765 0.87710 1.20501 1.00841 0.89525 1.43901 0.91499 1.24973 0.96378 0.96979 0.94222 1.69987 1.04428 1.31307 1.45186 0.86656 0.78566 0.84767 0.78601 1.20015 1.21194 1.19589 1.23075 0.91658 1.03743 1.06267 1.22573 0.99719 0.97254 0.99347 0.90229 0.91762 0.89763 0.73460 0.85503 0.92469 0.92778 0.91641 0.90080 0.89799 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 8.93 37.16 0.33 -1.14 16 2 C -0.45 -6.69 3.35 -27.88 -0.09 -6.78 16 3 H 0.11 1.60 8.14 -51.92 -0.42 1.18 16 4 C 0.51 7.80 7.50 36.01 0.27 8.07 16 5 O -0.51 -8.89 16.80 -18.75 -0.31 -9.20 16 6 O -0.52 -6.10 13.42 -39.27 -0.53 -6.62 16 7 S 1.30 24.83 11.60 -107.50 -1.25 23.59 16 8 O -0.84 -20.03 18.14 -35.23 -0.64 -20.67 16 9 C -0.38 -7.87 5.15 37.16 0.19 -7.68 16 10 C 0.06 1.41 1.34 -155.66 -0.21 1.20 16 11 C -0.51 -12.94 8.48 -34.44 -0.29 -13.23 16 12 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 13 C 0.08 1.99 5.39 -17.82 -0.10 1.90 16 14 N -0.87 -22.59 12.92 55.43 0.72 -21.87 16 15 Si 0.89 19.53 29.55 -169.99 -5.02 14.51 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 C -0.21 -4.88 9.96 -26.69 -0.27 -5.15 16 20 C -0.15 -3.51 9.43 -26.69 -0.25 -3.77 16 21 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.08 1.00 6.54 -51.93 -0.34 0.66 16 24 H 0.41 2.83 9.10 45.56 0.41 3.24 16 25 H 0.13 2.51 6.96 -51.92 -0.36 2.15 16 26 H 0.06 1.11 8.09 -51.92 -0.42 0.69 16 27 H 0.26 6.48 8.32 -40.82 -0.34 6.14 16 28 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 30 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 287.09 15.07 4.33 4.33 Total: -1.00 -32.08 287.09 -6.33 -38.41 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.21 Total: 4.13 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -0.41 Total: -26.59 kcal Atomic # 7 Polarization: -22.59 SS G_CDS: 0.72 Total: -21.87 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -1.48 Total: -36.50 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 24.83 SS G_CDS: -1.25 Total: 23.59 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.08 -6.33 -38.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855083.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.543 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds