Wall clock time and date at job start Mon Mar 30 2020 03:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47352 * 2 1 4 4 C 1.50704 * 109.47228 * 120.00088 * 2 1 3 5 5 O 1.20824 * 120.00059 * 100.00272 * 4 2 1 6 6 O 1.34235 * 119.99714 * 280.27820 * 4 2 1 7 7 S 1.81398 * 109.47513 * 239.99882 * 2 1 3 8 8 O 1.42098 * 109.47341 * 171.38735 * 7 2 1 9 9 C 1.81402 * 102.99562 * 55.00032 * 7 2 1 10 10 C 1.53005 * 109.46817 * 178.98354 * 9 7 2 11 11 C 1.50693 * 115.55392 * 64.91384 * 10 9 7 12 12 H 1.08000 * 120.00020 * 265.26620 * 11 10 9 13 13 C 1.37881 * 120.00265 * 85.25753 * 11 10 9 14 14 N 1.31513 * 119.99844 * 353.53348 * 13 11 10 15 15 Si 1.86802 * 120.00092 * 173.53273 * 13 11 10 16 16 H 1.48501 * 109.47116 * 89.99822 * 15 13 11 17 17 H 1.48498 * 109.47214 * 210.00231 * 15 13 11 18 18 H 1.48506 * 109.47159 * 329.99936 * 15 13 11 19 19 C 1.53002 * 117.49697 * 279.23724 * 10 9 7 20 20 C 1.53006 * 117.49791 * 210.58128 * 10 9 7 21 21 H 1.08996 * 109.46860 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47168 * 299.99794 * 1 2 3 23 23 H 1.08994 * 109.46996 * 60.00153 * 1 2 3 24 24 H 0.96701 * 116.99373 * 179.72800 * 6 4 2 25 25 H 1.09000 * 109.46980 * 298.97716 * 9 7 2 26 26 H 1.08999 * 109.47153 * 58.98596 * 9 7 2 27 27 H 0.96998 * 119.99916 * 185.09381 * 14 13 11 28 28 H 1.08995 * 117.49794 * 0.02562 * 19 10 9 29 29 H 1.09004 * 117.49551 * 145.02213 * 19 10 9 30 30 H 1.09000 * 117.49729 * 214.98287 * 20 10 9 31 31 H 1.09002 * 117.49675 * 359.97178 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.4051 -1.8573 1.1560 6 8 2.0605 -0.0708 2.4103 7 16 2.1348 -0.8551 -1.4811 8 8 3.5415 -0.6839 -1.5857 9 6 1.3149 0.0375 -2.8308 10 6 1.7482 -0.5570 -4.1724 11 6 1.3253 -1.9822 -4.4188 12 1 1.9995 -2.7934 -4.1867 13 6 0.0775 -2.2508 -4.9404 14 7 -0.7904 -1.2763 -5.1040 15 14 -0.3802 -3.9986 -5.4147 16 1 -0.9938 -4.6834 -4.2486 17 1 -1.3508 -3.9686 -6.5382 18 1 0.8402 -4.7334 -5.8344 19 6 3.0982 -0.1127 -4.7390 20 6 1.7989 0.3833 -5.3784 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 2.3871 -0.5690 3.1720 25 1 0.2342 -0.0557 -2.7243 26 1 1.5945 1.0903 -2.7927 27 1 -1.6923 -1.4748 -5.4009 28 1 3.6779 0.6027 -4.1557 29 1 3.6803 -0.8513 -5.2902 30 1 1.5267 -0.0291 -6.3499 31 1 1.5232 1.4253 -5.2160 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083855083.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:37 Heat of formation + Delta-G solvation = -131.486787 kcal Electronic energy + Delta-G solvation = -16217.037399 eV Core-core repulsion = 13397.140847 eV Total energy + Delta-G solvation = -2819.896552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.29046 -38.43572 -37.19964 -36.78959 -34.24486 -33.94941 -29.47128 -27.33391 -26.11249 -22.99821 -22.75559 -21.16589 -19.27298 -18.64175 -17.84821 -17.63619 -16.79482 -16.64265 -16.27561 -15.76541 -15.28862 -15.06999 -14.56631 -14.37227 -13.62769 -13.52226 -13.17910 -12.99336 -12.77273 -12.71961 -12.61861 -12.52809 -12.28780 -12.08827 -11.66806 -11.60711 -11.18872 -10.77074 -10.41308 -9.96845 -8.95000 -8.03663 -6.19316 0.38051 1.09483 1.53840 1.57333 1.65267 1.80871 2.09618 2.51831 2.88659 3.24577 3.49126 3.87326 4.01897 4.12996 4.25377 4.44261 4.58318 4.73192 4.79942 4.87815 4.92687 5.00621 5.20367 5.28368 5.48848 5.56097 5.64324 5.85820 6.40916 6.87542 6.89056 7.51859 9.03913 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.007846 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.975558 B = 3567.664486 C = 3957.903040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.433 4.433 3 H 0.121 0.879 4 C 0.516 3.484 5 O -0.536 6.536 6 O -0.504 6.504 7 S 1.312 4.688 8 O -0.898 6.898 9 C -0.380 4.380 10 C 0.043 3.957 11 C -0.526 4.526 12 H 0.058 0.942 13 C 0.046 3.954 14 N -0.894 5.894 15 Si 0.940 3.060 16 H -0.259 1.259 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.210 4.210 20 C -0.150 4.150 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.431 0.569 25 H 0.134 0.866 26 H 0.063 0.937 27 H 0.265 0.735 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 2.007 11.541 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.548 4.548 3 H 0.139 0.861 4 C 0.359 3.641 5 O -0.426 6.426 6 O -0.318 6.318 7 S 1.511 4.489 8 O -0.893 6.893 9 C -0.519 4.519 10 C 0.041 3.959 11 C -0.564 4.564 12 H 0.076 0.924 13 C -0.157 4.157 14 N -0.530 5.530 15 Si 0.765 3.235 16 H -0.184 1.184 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.247 4.247 20 C -0.189 4.189 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.293 0.707 25 H 0.152 0.848 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.937 1.227 11.097 11.332 hybrid contribution 0.740 1.267 -0.158 1.476 sum -1.198 2.494 10.940 11.284 Atomic orbital electron populations 1.21554 0.85727 1.05498 1.05329 1.27803 1.08218 1.10934 1.07850 0.86081 1.22333 0.73022 0.84132 0.84636 1.90745 1.45783 1.19667 1.86452 1.84480 1.78822 1.49242 1.19254 1.71558 0.86995 1.06654 0.83700 1.92895 1.29377 1.82124 1.84923 1.27121 1.10732 1.05438 1.08632 1.18485 0.93548 0.94593 0.89280 1.20653 1.01089 0.90140 1.44481 0.92363 1.25502 0.96198 1.00024 0.93963 1.70050 1.04689 1.32689 1.45587 0.85832 0.77899 0.81142 0.78624 1.18393 1.21315 1.20196 1.23032 0.91648 1.03709 1.06310 1.22514 0.99849 0.97866 0.98661 0.89291 0.89204 0.89405 0.70719 0.84778 0.91800 0.92551 0.91362 0.90638 0.91445 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.62 8.93 71.98 0.64 -1.98 16 2 C -0.43 -12.05 3.35 29.85 0.10 -11.95 16 3 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 4 C 0.52 14.49 7.50 71.24 0.53 15.03 16 5 O -0.54 -18.11 16.80 21.97 0.37 -17.74 16 6 O -0.50 -10.23 13.42 -51.47 -0.69 -10.92 16 7 S 1.31 49.24 11.60 -56.49 -0.66 48.59 16 8 O -0.90 -43.13 18.14 -148.98 -2.70 -45.83 16 9 C -0.38 -15.25 5.15 71.98 0.37 -14.88 16 10 C 0.04 2.04 1.34 -52.93 -0.07 1.96 16 11 C -0.53 -26.73 8.48 25.60 0.22 -26.51 16 12 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 13 C 0.05 2.28 5.39 84.66 0.46 2.74 16 14 N -0.89 -45.59 12.92 21.45 0.28 -45.32 16 15 Si 0.94 39.49 29.55 68.60 2.03 41.52 16 16 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 17 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 C -0.21 -9.84 9.96 30.62 0.30 -9.53 16 20 C -0.15 -7.04 9.43 30.62 0.29 -6.76 16 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 22 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.09 1.83 6.54 -2.39 -0.02 1.82 16 24 H 0.43 4.54 9.10 -74.06 -0.67 3.86 16 25 H 0.13 5.14 6.96 -2.39 -0.02 5.12 16 26 H 0.06 2.41 8.09 -2.39 -0.02 2.40 16 27 H 0.27 12.84 8.32 -92.71 -0.77 12.07 16 28 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.08 3.56 8.14 -2.38 -0.02 3.54 16 30 H 0.07 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -67.68 287.09 1.93 -65.74 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.47 Total: 15.83 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 2.84 Total: -51.87 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.28 Total: -45.32 kcal Atomic # 8 Polarization: -71.47 SS G_CDS: -3.02 Total: -74.49 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 16 Polarization: 49.24 SS G_CDS: -0.66 Total: 48.59 kcal Total: -67.68 1.93 -65.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083855083.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.742 kcal (2) G-P(sol) polarization free energy of solvation -67.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds