Wall clock time and date at job start Mon Mar 30 2020 03:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00273 * 2 1 4 4 H 1.48498 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46786 * 299.99887 * 3 2 1 6 6 H 1.48499 * 109.47062 * 59.99835 * 3 2 1 7 7 C 1.37883 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99849 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00217 * 0.02562 * 7 2 1 10 10 O 1.42105 * 106.40398 * 66.45333 * 9 7 2 11 11 O 1.42104 * 106.40077 * 293.53862 * 9 7 2 12 12 N 1.65600 * 107.21781 * 179.97438 * 9 7 2 13 13 C 1.47422 * 125.69125 * 89.97703 * 12 9 7 14 14 C 1.54764 * 104.71514 * 153.51718 * 13 12 9 15 15 C 1.55092 * 102.16392 * 36.73149 * 14 13 12 16 16 H 1.09004 * 112.83046 * 90.20091 * 15 14 13 17 17 C 1.53706 * 108.31780 * 215.75257 * 15 14 13 18 18 N 1.47229 * 107.80242 * 114.09026 * 17 15 14 19 19 C 1.47633 * 107.61059 * 339.29859 * 18 17 15 20 20 C 1.47979 * 125.57633 * 270.61897 * 12 9 7 21 21 H 1.09000 * 111.87791 * 63.48463 * 20 12 9 22 22 H 0.97000 * 120.00070 * 0.02562 * 1 2 3 23 23 H 1.08994 * 110.39176 * 34.70689 * 13 12 9 24 24 H 1.08993 * 110.48529 * 272.36945 * 13 12 9 25 25 H 1.09005 * 110.86713 * 278.56235 * 14 13 12 26 26 H 1.09005 * 111.04649 * 154.97967 * 14 13 12 27 27 H 1.09002 * 109.80459 * 233.68437 * 17 15 14 28 28 H 1.08997 * 109.80096 * 354.49865 * 17 15 14 29 29 H 1.00894 * 110.99990 * 100.93384 * 18 17 15 30 30 H 1.08999 * 110.14925 * 270.72807 * 19 18 17 31 31 H 1.08999 * 110.26832 * 148.93081 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 2.8328 -4.5664 1.1979 14 6 3.2376 -5.9868 0.7357 15 6 3.7271 -5.7319 -0.7137 16 1 4.7932 -5.5114 -0.7674 17 6 3.3249 -6.9373 -1.5784 18 7 2.3343 -6.4737 -2.5640 19 6 1.7443 -5.2221 -2.0495 20 6 2.8425 -4.5585 -1.2030 21 1 3.4225 -3.8433 -1.7862 22 1 -0.4850 0.8400 -0.0004 23 1 2.0933 -4.6232 1.9965 24 1 3.7095 -4.0116 1.5319 25 1 2.3781 -6.6572 0.7430 26 1 4.0431 -6.3847 1.3531 27 1 4.2013 -7.3314 -2.0930 28 1 2.8860 -7.7124 -0.9502 29 1 2.7625 -6.3275 -3.4658 30 1 0.8746 -5.4435 -1.4308 31 1 1.4612 -4.5703 -2.8760 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083920826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:57 Heat of formation + Delta-G solvation = -83.326299 kcal Electronic energy + Delta-G solvation = -16950.864952 eV Core-core repulsion = 14165.349546 eV Total energy + Delta-G solvation = -2785.515406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55119 -35.30848 -34.71266 -33.95820 -33.09521 -31.04530 -28.12929 -26.77605 -26.09971 -21.83476 -21.46635 -19.77462 -18.74014 -17.43764 -16.77481 -16.02642 -15.06845 -15.03698 -14.35543 -13.86013 -13.63442 -13.32655 -13.09184 -12.73774 -12.27056 -12.03886 -11.82028 -11.59716 -11.24953 -11.20319 -10.63751 -10.59924 -10.51558 -10.40925 -10.27147 -10.26968 -10.13313 -9.27322 -8.97089 -8.60744 -8.05614 -6.71037 -5.33260 2.22286 3.03682 3.11833 3.19069 4.03319 4.33262 4.46818 4.61318 4.71629 4.96983 5.09764 5.35384 5.42869 5.55326 5.62855 5.73823 5.85459 5.89740 5.97537 6.07219 6.11146 6.24412 6.40424 6.44746 6.60576 6.89564 6.95138 7.31854 7.48605 7.51936 7.96800 8.87685 10.22420 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.037115 B = 0.008100 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.225497 B = 3455.894418 C = 3507.308577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.270 1.270 7 C -1.022 5.022 8 H 0.101 0.899 9 S 2.727 3.273 10 O -0.997 6.997 11 O -1.002 7.002 12 N -1.014 6.014 13 C 0.120 3.880 14 C -0.121 4.121 15 C -0.128 4.128 16 H 0.092 0.908 17 C 0.053 3.947 18 N -0.678 5.678 19 C 0.038 3.962 20 C 0.131 3.869 21 H 0.079 0.921 22 H 0.291 0.709 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.335 0.665 30 H 0.082 0.918 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.861 -9.256 -1.561 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.195 1.195 7 C -1.155 5.155 8 H 0.119 0.881 9 S 2.828 3.172 10 O -0.987 6.987 11 O -0.993 6.993 12 N -0.849 5.849 13 C -0.006 4.006 14 C -0.160 4.160 15 C -0.149 4.149 16 H 0.110 0.890 17 C -0.077 4.077 18 N -0.305 5.305 19 C -0.092 4.092 20 C 0.022 3.978 21 H 0.097 0.903 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.076 0.924 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.150 0.850 30 H 0.100 0.900 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.113 -9.703 -1.348 12.106 hybrid contribution 1.797 2.014 -0.065 2.700 sum 8.910 -7.689 -1.412 11.853 Atomic orbital electron populations 1.69898 1.06755 1.30655 1.40212 1.24759 0.94477 1.00804 0.88507 0.86144 0.80435 0.80434 0.78625 1.18668 1.19545 1.19529 1.30678 1.06151 1.11988 1.66707 0.88102 1.00172 0.71688 0.72465 0.72842 1.93358 1.72400 1.87434 1.45529 1.93356 1.72474 1.87525 1.45907 1.59392 1.61149 1.54256 1.10082 1.21830 0.98119 0.92010 0.88607 1.22867 1.00894 0.97250 0.94973 1.23291 0.99611 0.95303 0.96717 0.88997 1.22634 0.94112 0.96656 0.94311 1.61978 1.32933 1.30492 1.05147 1.23130 0.97431 0.89039 0.99630 1.22409 0.93914 0.93891 0.87574 0.90349 0.89906 0.90230 0.92350 0.90630 0.90651 0.92100 0.90464 0.84993 0.89985 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.06 13.19 55.43 0.73 -24.33 16 2 C 0.13 3.73 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -1.02 -28.58 9.75 30.60 0.30 -28.28 16 8 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 9 S 2.73 73.33 5.18 -107.50 -0.56 72.78 16 10 O -1.00 -28.67 16.20 -57.17 -0.93 -29.59 16 11 O -1.00 -29.75 17.31 -57.17 -0.99 -30.74 16 12 N -1.01 -20.98 3.35 -103.14 -0.35 -21.32 16 13 C 0.12 2.06 7.13 -2.61 -0.02 2.04 16 14 C -0.12 -1.59 6.41 -24.70 -0.16 -1.74 16 15 C -0.13 -1.68 4.00 -88.16 -0.35 -2.03 16 16 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 17 C 0.05 0.63 7.10 -3.28 -0.02 0.60 16 18 N -0.68 -9.40 7.43 -112.16 -0.83 -10.24 16 19 C 0.04 0.67 5.81 -3.04 -0.02 0.65 16 20 C 0.13 2.27 4.06 -65.75 -0.27 2.00 16 21 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 22 H 0.29 7.70 8.31 -40.82 -0.34 7.36 16 23 H 0.08 1.41 7.73 -51.93 -0.40 1.01 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.08 1.01 7.44 -51.93 -0.39 0.62 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.90 7.22 -51.93 -0.37 0.53 16 29 H 0.33 3.90 8.91 -39.30 -0.35 3.55 16 30 H 0.08 1.62 8.02 -51.93 -0.42 1.20 16 31 H 0.09 1.59 7.97 -51.93 -0.41 1.18 16 LS Contribution 267.35 15.07 4.03 4.03 Total: -1.00 -34.34 267.35 -8.55 -42.89 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.00 Total: 3.94 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: -0.64 Total: -23.13 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.45 Total: -55.89 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -1.92 Total: -60.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 73.33 SS G_CDS: -0.56 Total: 72.78 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -34.34 -8.55 -42.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083920826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.437 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds