Wall clock time and date at job start Mon Mar 30 2020 03:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00273 * 2 1 4 4 H 1.48498 * 109.47151 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46786 * 299.99887 * 3 2 1 6 6 H 1.48499 * 109.47062 * 59.99835 * 3 2 1 7 7 C 1.37883 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99849 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00217 * 0.02562 * 7 2 1 10 10 O 1.42105 * 106.40398 * 66.45333 * 9 7 2 11 11 O 1.42104 * 106.40077 * 293.53862 * 9 7 2 12 12 N 1.65600 * 107.21781 * 179.97438 * 9 7 2 13 13 C 1.47422 * 125.69125 * 89.97703 * 12 9 7 14 14 C 1.54764 * 104.71514 * 153.51718 * 13 12 9 15 15 C 1.55092 * 102.16392 * 36.73149 * 14 13 12 16 16 H 1.09004 * 112.83046 * 90.20091 * 15 14 13 17 17 C 1.53706 * 108.31780 * 215.75257 * 15 14 13 18 18 N 1.47229 * 107.80242 * 114.09026 * 17 15 14 19 19 C 1.47633 * 107.61059 * 339.29859 * 18 17 15 20 20 C 1.47979 * 125.57633 * 270.61897 * 12 9 7 21 21 H 1.09000 * 111.87791 * 63.48463 * 20 12 9 22 22 H 0.97000 * 120.00070 * 0.02562 * 1 2 3 23 23 H 1.08994 * 110.39176 * 34.70689 * 13 12 9 24 24 H 1.08993 * 110.48529 * 272.36945 * 13 12 9 25 25 H 1.09005 * 110.86713 * 278.56235 * 14 13 12 26 26 H 1.09005 * 111.04649 * 154.97967 * 14 13 12 27 27 H 1.09002 * 109.80459 * 233.68437 * 17 15 14 28 28 H 1.08997 * 109.80096 * 354.49865 * 17 15 14 29 29 H 1.00894 * 110.99990 * 100.93384 * 18 17 15 30 30 H 1.08999 * 110.14925 * 270.72807 * 19 18 17 31 31 H 1.08999 * 110.26832 * 148.93081 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 16 1.1235 -2.7200 0.0005 10 8 0.4517 -2.7956 -1.2494 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0005 13 6 2.8328 -4.5664 1.1979 14 6 3.2376 -5.9868 0.7357 15 6 3.7271 -5.7319 -0.7137 16 1 4.7932 -5.5114 -0.7674 17 6 3.3249 -6.9373 -1.5784 18 7 2.3343 -6.4737 -2.5640 19 6 1.7443 -5.2221 -2.0495 20 6 2.8425 -4.5585 -1.2030 21 1 3.4225 -3.8433 -1.7862 22 1 -0.4850 0.8400 -0.0004 23 1 2.0933 -4.6232 1.9965 24 1 3.7095 -4.0116 1.5319 25 1 2.3781 -6.6572 0.7430 26 1 4.0431 -6.3847 1.3531 27 1 4.2013 -7.3314 -2.0930 28 1 2.8860 -7.7124 -0.9502 29 1 2.7625 -6.3275 -3.4658 30 1 0.8746 -5.4435 -1.4308 31 1 1.4612 -4.5703 -2.8760 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083920826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:56 Heat of formation + Delta-G solvation = -112.944409 kcal Electronic energy + Delta-G solvation = -16952.149290 eV Core-core repulsion = 14165.349546 eV Total energy + Delta-G solvation = -2786.799743 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.78795 -37.47399 -36.17968 -36.05507 -35.21820 -32.32476 -29.39969 -28.35994 -27.93868 -23.20497 -22.67399 -21.12171 -20.63104 -19.13288 -18.50649 -17.68433 -16.98143 -16.48414 -16.11163 -15.69615 -15.17699 -14.57868 -14.32734 -14.21946 -14.03116 -13.53578 -13.34930 -13.07303 -13.04858 -12.88383 -12.53198 -12.43768 -12.32274 -12.12327 -11.75192 -11.63558 -11.44218 -11.30886 -11.00806 -10.02943 -9.42630 -8.78711 -7.54149 0.23700 1.29299 1.29628 1.47879 2.16554 2.52387 2.78345 3.30364 3.46558 3.60872 3.75766 4.04960 4.13443 4.23852 4.37568 4.39492 4.45682 4.60259 4.71785 4.82926 4.97475 5.05413 5.14016 5.16823 5.18660 5.37095 5.39789 5.70225 5.85713 5.91759 6.52655 6.72719 8.16406 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.037115 B = 0.008100 C = 0.007981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.225497 B = 3455.894418 C = 3507.308577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.068 3.932 3 Si 0.992 3.008 4 H -0.247 1.247 5 H -0.257 1.257 6 H -0.257 1.257 7 C -1.044 5.044 8 H 0.116 0.884 9 S 2.730 3.270 10 O -1.030 7.030 11 O -1.044 7.044 12 N -1.017 6.017 13 C 0.105 3.895 14 C -0.109 4.109 15 C -0.114 4.114 16 H 0.124 0.876 17 C 0.053 3.947 18 N -0.679 5.679 19 C 0.041 3.959 20 C 0.115 3.885 21 H 0.081 0.919 22 H 0.300 0.700 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.350 0.650 30 H 0.049 0.951 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.977 -9.886 -1.710 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.145 4.145 3 Si 0.809 3.191 4 H -0.170 1.170 5 H -0.181 1.181 6 H -0.181 1.181 7 C -1.177 5.177 8 H 0.134 0.866 9 S 2.834 3.166 10 O -1.020 7.020 11 O -1.034 7.034 12 N -0.856 5.856 13 C -0.020 4.020 14 C -0.148 4.148 15 C -0.135 4.135 16 H 0.142 0.858 17 C -0.076 4.076 18 N -0.308 5.308 19 C -0.090 4.090 20 C 0.007 3.993 21 H 0.099 0.901 22 H 0.110 0.890 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.100 0.900 29 H 0.167 0.833 30 H 0.068 0.932 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.224 -10.360 -1.503 14.633 hybrid contribution 0.831 2.106 -0.029 2.264 sum 11.056 -8.254 -1.532 13.882 Atomic orbital electron populations 1.69990 1.08797 1.32371 1.41402 1.26074 0.95434 1.05476 0.87493 0.85090 0.79446 0.74951 0.79599 1.17036 1.18089 1.18129 1.31037 1.07032 1.12916 1.66749 0.86631 0.99584 0.72330 0.73200 0.71512 1.93302 1.74128 1.88168 1.46426 1.93289 1.74405 1.88378 1.47335 1.58853 1.60647 1.53143 1.12908 1.22209 0.98027 0.94761 0.87032 1.22891 1.02101 0.94271 0.95580 1.23356 1.00318 0.93420 0.96399 0.85808 1.22758 0.94845 0.96006 0.93996 1.61879 1.34300 1.28153 1.06428 1.22880 0.97026 0.90469 0.98645 1.22780 0.94539 0.95458 0.86514 0.90148 0.89015 0.91962 0.90646 0.91141 0.86432 0.88402 0.90040 0.83341 0.93220 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.45 13.19 21.45 0.28 -54.17 16 2 C 0.07 3.86 5.46 84.66 0.46 4.32 16 3 Si 0.99 41.85 29.54 68.60 2.03 43.87 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -1.04 -59.23 9.75 67.74 0.66 -58.57 16 8 H 0.12 5.96 7.81 -2.91 -0.02 5.94 16 9 S 2.73 152.62 5.18 -56.49 -0.29 152.33 16 10 O -1.03 -62.32 16.20 -128.00 -2.07 -64.40 16 11 O -1.04 -64.96 17.31 -128.00 -2.22 -67.18 16 12 N -1.02 -42.48 3.35 -480.22 -1.61 -44.09 16 13 C 0.10 3.47 7.13 86.80 0.62 4.09 16 14 C -0.11 -2.53 6.41 31.91 0.20 -2.32 16 15 C -0.11 -2.57 4.00 -9.20 -0.04 -2.61 16 16 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 17 C 0.05 1.05 7.10 86.48 0.61 1.67 16 18 N -0.68 -17.61 7.43 -508.75 -3.78 -21.39 16 19 C 0.04 1.45 5.81 86.41 0.50 1.96 16 20 C 0.12 3.89 4.06 45.59 0.19 4.07 16 21 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 22 H 0.30 16.28 8.31 -92.71 -0.77 15.50 16 23 H 0.06 2.24 7.73 -2.39 -0.02 2.23 16 24 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.07 1.71 7.44 -2.38 -0.02 1.70 16 26 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.59 7.22 -2.39 -0.02 1.57 16 29 H 0.35 7.36 8.91 -89.70 -0.80 6.57 16 30 H 0.05 2.06 8.02 -2.39 -0.02 2.04 16 31 H 0.07 2.58 7.97 -2.39 -0.02 2.56 16 Total: -1.00 -78.20 267.35 -4.11 -82.31 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.34 Total: 20.10 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 3.21 Total: -47.39 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -5.10 Total: -119.65 kcal Atomic # 8 Polarization: -127.29 SS G_CDS: -4.29 Total: -131.58 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 152.62 SS G_CDS: -0.29 Total: 152.33 kcal Total: -78.20 -4.11 -82.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083920826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.634 kcal (2) G-P(sol) polarization free energy of solvation -78.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds