Wall clock time and date at job start Mon Mar 30 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00117 * 2 1 4 4 H 1.48491 * 109.47096 * 239.99740 * 3 2 1 5 5 H 1.48497 * 109.46736 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47220 * 119.99462 * 3 2 1 7 7 C 1.37874 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00142 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00231 * 0.02562 * 7 2 1 10 10 S 1.81402 * 109.47347 * 179.97438 * 9 7 2 11 11 O 1.42096 * 109.47165 * 70.94493 * 10 9 7 12 12 C 1.76200 * 103.00010 * 180.02562 * 10 9 7 13 13 C 1.38249 * 119.96599 * 89.99801 * 12 10 9 14 14 C 1.38217 * 120.07472 * 180.02562 * 13 12 10 15 15 C 1.38418 * 119.99440 * 359.97438 * 14 13 12 16 16 F 1.35096 * 120.03238 * 180.02562 * 15 14 13 17 17 C 1.38644 * 119.92974 * 0.02562 * 15 14 13 18 18 F 1.35104 * 120.03516 * 179.97438 * 17 15 14 19 19 C 1.38217 * 119.96102 * 270.21073 * 12 10 9 20 20 H 0.97001 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47206 * 59.99970 * 9 7 2 22 22 H 1.08999 * 109.47044 * 299.99892 * 9 7 2 23 23 H 1.08003 * 119.96903 * 359.97438 * 13 12 10 24 24 H 1.07998 * 120.00292 * 179.97438 * 14 13 12 25 25 H 1.07999 * 120.00431 * 0.02562 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.0701 -3.9538 1.2668 12 6 1.3825 -5.2949 -0.0002 13 6 0.9724 -5.8498 -1.1982 14 6 0.1503 -6.9610 -1.2014 15 6 -0.2627 -7.5196 -0.0043 16 9 -1.0658 -8.6060 -0.0065 17 6 0.1486 -6.9631 1.1971 18 9 -0.2537 -7.5063 2.3669 19 6 0.9682 -5.8477 1.1969 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 1.2939 -5.4142 -2.1327 24 1 -0.1697 -7.3933 -2.1380 25 1 1.2861 -5.4110 2.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084263686.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:41 Heat of formation + Delta-G solvation = -109.226707 kcal Electronic energy + Delta-G solvation = -14916.647341 eV Core-core repulsion = 11850.795448 eV Total energy + Delta-G solvation = -3065.851893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.45012 -48.51536 -38.63316 -34.92068 -33.20488 -30.92917 -30.32845 -28.67434 -23.51658 -23.21074 -22.70381 -18.46769 -17.58143 -17.03904 -16.57115 -16.27822 -16.24237 -15.13361 -14.93802 -14.79310 -14.41526 -14.07110 -13.64290 -13.26016 -12.66151 -12.54885 -12.22055 -12.10507 -11.43487 -11.25897 -11.03935 -10.76162 -10.42964 -9.70655 -9.33018 -9.09597 -8.78876 -8.62948 -7.51183 -6.24492 -4.33095 0.74304 1.04864 2.46917 3.23204 3.24209 3.28106 3.31409 3.70236 3.84615 4.28170 4.32636 4.52298 4.72643 5.01070 5.13693 5.25256 5.45960 5.80223 5.88261 6.00590 6.22071 6.76203 6.94819 7.05323 7.58090 7.91741 8.70683 9.32750 10.86945 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.005578 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.126053 B = 5018.175302 C = 5093.659455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.065 0.935 9 C -0.255 4.255 10 S 1.285 4.715 11 O -0.866 6.866 12 C -0.427 4.427 13 C -0.030 4.030 14 C -0.144 4.144 15 C 0.083 3.917 16 F -0.132 7.132 17 C 0.049 3.951 18 F -0.133 7.133 19 C -0.063 4.063 20 H 0.266 0.734 21 H 0.074 0.926 22 H 0.043 0.957 23 H 0.154 0.846 24 H 0.148 0.852 25 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.162 -11.481 -6.369 13.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.083 0.917 9 C -0.395 4.395 10 S 1.484 4.516 11 O -0.862 6.862 12 C -0.520 4.520 13 C -0.049 4.049 14 C -0.164 4.164 15 C 0.063 3.937 16 F -0.110 7.110 17 C 0.027 3.973 18 F -0.112 7.112 19 C -0.083 4.083 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.172 0.828 24 H 0.166 0.834 25 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.937 -11.490 -6.292 13.243 hybrid contribution -1.552 0.445 2.110 2.657 sum 0.385 -11.045 -4.182 11.816 Atomic orbital electron populations 1.69955 1.06260 1.27416 1.48456 1.24974 0.94922 0.99433 0.94135 0.86507 0.79584 0.82071 0.79121 1.19517 1.21014 1.19913 1.20377 0.92698 0.88966 1.54062 0.91722 1.24981 1.06083 1.05081 1.03402 1.69033 0.89143 0.83430 1.09971 1.93019 1.64579 1.83728 1.44839 1.28601 1.11470 1.16679 0.95209 1.20852 0.93339 0.92902 0.97843 1.21195 1.00571 0.98268 0.96333 1.17799 0.95133 0.87030 0.93781 1.91509 1.70762 1.51444 1.97331 1.17845 1.02080 0.96932 0.80394 1.91508 1.89238 1.85059 1.45381 1.21164 0.93739 0.92901 1.00508 0.92437 0.90817 0.93841 0.82810 0.83445 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.05 13.29 55.43 0.74 -24.32 15 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 15 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -13.66 9.13 -34.44 -0.31 -13.97 15 8 H 0.06 1.61 7.71 -52.48 -0.40 1.21 15 9 C -0.25 -5.91 5.64 36.01 0.20 -5.71 15 10 S 1.29 22.81 13.46 -107.50 -1.45 21.37 15 11 O -0.87 -20.32 16.90 -35.23 -0.60 -20.91 15 12 C -0.43 -6.76 5.61 -39.59 -0.22 -6.99 15 13 C -0.03 -0.36 9.75 -39.58 -0.39 -0.75 15 14 C -0.14 -1.70 10.03 -39.52 -0.40 -2.09 15 15 C 0.08 1.20 7.31 -39.37 -0.29 0.92 15 16 F -0.13 -1.91 17.18 2.25 0.04 -1.87 15 17 C 0.05 0.80 7.31 -39.37 -0.29 0.52 15 18 F -0.13 -2.28 17.18 2.25 0.04 -2.24 15 19 C -0.06 -1.11 9.42 -39.52 -0.37 -1.49 15 20 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.07 1.64 8.14 -51.92 -0.42 1.21 15 22 H 0.04 1.14 8.14 -51.92 -0.42 0.72 15 23 H 0.15 1.18 8.06 -52.48 -0.42 0.76 15 24 H 0.15 1.24 8.06 -52.49 -0.42 0.81 15 25 H 0.15 2.80 7.46 -52.49 -0.39 2.41 15 LS Contribution 254.40 15.07 3.83 3.83 Total: -1.00 -33.67 254.40 -6.20 -39.86 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: -1.62 Total: -3.39 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -2.16 Total: -27.76 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.74 Total: -24.32 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.60 Total: -20.91 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.08 Total: -4.11 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 22.81 SS G_CDS: -1.45 Total: 21.37 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -33.67 -6.20 -39.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084263686.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.362 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds