Wall clock time and date at job start Mon Mar 30 2020 03:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00117 * 2 1 4 4 H 1.48491 * 109.47096 * 239.99740 * 3 2 1 5 5 H 1.48497 * 109.46736 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47220 * 119.99462 * 3 2 1 7 7 C 1.37874 * 119.99952 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00142 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00231 * 0.02562 * 7 2 1 10 10 S 1.81402 * 109.47347 * 179.97438 * 9 7 2 11 11 O 1.42096 * 109.47165 * 70.94493 * 10 9 7 12 12 C 1.76200 * 103.00010 * 180.02562 * 10 9 7 13 13 C 1.38249 * 119.96599 * 89.99801 * 12 10 9 14 14 C 1.38217 * 120.07472 * 180.02562 * 13 12 10 15 15 C 1.38418 * 119.99440 * 359.97438 * 14 13 12 16 16 F 1.35096 * 120.03238 * 180.02562 * 15 14 13 17 17 C 1.38644 * 119.92974 * 0.02562 * 15 14 13 18 18 F 1.35104 * 120.03516 * 179.97438 * 17 15 14 19 19 C 1.38217 * 119.96102 * 270.21073 * 12 10 9 20 20 H 0.97001 * 119.99898 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47206 * 59.99970 * 9 7 2 22 22 H 1.08999 * 109.47044 * 299.99892 * 9 7 2 23 23 H 1.08003 * 119.96903 * 359.97438 * 13 12 10 24 24 H 1.07998 * 120.00292 * 179.97438 * 14 13 12 25 25 H 1.07999 * 120.00431 * 0.02562 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 8 3.0701 -3.9538 1.2668 12 6 1.3825 -5.2949 -0.0002 13 6 0.9724 -5.8498 -1.1982 14 6 0.1503 -6.9610 -1.2014 15 6 -0.2627 -7.5196 -0.0043 16 9 -1.0658 -8.6060 -0.0065 17 6 0.1486 -6.9631 1.1971 18 9 -0.2537 -7.5063 2.3669 19 6 0.9682 -5.8477 1.1969 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 1.2939 -5.4142 -2.1327 24 1 -0.1697 -7.3933 -2.1380 25 1 1.2861 -5.4110 2.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084263686.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:40 Heat of formation + Delta-G solvation = -132.515457 kcal Electronic energy + Delta-G solvation = -14917.657217 eV Core-core repulsion = 11850.795448 eV Total energy + Delta-G solvation = -3066.861769 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.027 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.66796 -49.74879 -39.80193 -36.68674 -35.20079 -32.10049 -31.52471 -30.61102 -25.30206 -24.47719 -23.99532 -19.77777 -18.84360 -18.49912 -18.25053 -17.66802 -17.50582 -16.73696 -16.41287 -16.17346 -15.63404 -15.35403 -15.16932 -14.75600 -14.33074 -14.11151 -13.69073 -13.39916 -13.13942 -12.84713 -12.58552 -12.45208 -12.20830 -11.63054 -10.97721 -10.65375 -10.28954 -10.00945 -9.17091 -8.27157 -6.41887 -0.48054 -0.11463 1.03914 1.43662 1.46494 1.54061 1.94405 2.32532 2.39929 2.64763 2.98561 3.09691 3.25020 3.48536 3.89201 4.07863 4.41885 4.61329 4.78264 4.94613 4.99696 5.08734 5.17474 5.56493 5.63927 5.94796 6.73076 7.28121 8.84932 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.005578 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.126053 B = 5018.175302 C = 5093.659455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.962 3.038 4 H -0.246 1.246 5 H -0.283 1.283 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.073 0.927 9 C -0.277 4.277 10 S 1.388 4.612 11 O -0.926 6.926 12 C -0.448 4.448 13 C -0.007 4.007 14 C -0.123 4.123 15 C 0.086 3.914 16 F -0.130 7.130 17 C 0.024 3.976 18 F -0.145 7.145 19 C -0.088 4.088 20 H 0.266 0.734 21 H 0.081 0.919 22 H -0.004 1.004 23 H 0.211 0.789 24 H 0.198 0.802 25 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -12.303 -9.225 15.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.170 1.170 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.091 0.909 9 C -0.415 4.415 10 S 1.588 4.412 11 O -0.922 6.922 12 C -0.544 4.544 13 C -0.025 4.025 14 C -0.142 4.142 15 C 0.065 3.935 16 F -0.109 7.109 17 C 0.003 3.997 18 F -0.124 7.124 19 C -0.108 4.108 20 H 0.075 0.925 21 H 0.100 0.900 22 H 0.014 0.986 23 H 0.228 0.772 24 H 0.215 0.785 25 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.539 -12.277 -9.152 15.522 hybrid contribution -1.797 0.496 2.971 3.507 sum 0.742 -11.781 -6.181 13.325 Atomic orbital electron populations 1.70079 1.07881 1.28205 1.50044 1.25913 0.95734 1.03269 0.93873 0.85538 0.78441 0.77729 0.79720 1.16952 1.20874 1.20372 1.20909 0.93453 0.90507 1.52989 0.90933 1.25181 1.07139 1.07777 1.01400 1.68143 0.85696 0.80733 1.06671 1.92887 1.66821 1.84727 1.47770 1.28279 1.13202 1.16359 0.96516 1.21533 0.91011 0.91882 0.98106 1.21765 0.98474 0.97023 0.96929 1.18072 0.94657 0.86844 0.93900 1.91519 1.70671 1.51363 1.97321 1.18000 1.03158 0.97485 0.81073 1.91467 1.89443 1.85202 1.46270 1.21025 0.95402 0.94139 1.00212 0.92486 0.90041 0.98560 0.77237 0.78471 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.46 13.29 21.45 0.28 -53.18 15 2 C 0.01 0.70 5.46 84.65 0.46 1.17 15 3 Si 0.96 41.80 29.54 68.60 2.03 43.83 15 4 H -0.25 -9.66 7.11 99.48 0.71 -8.96 15 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.54 -28.51 9.13 25.60 0.23 -28.27 15 8 H 0.07 3.60 7.71 -2.91 -0.02 3.58 15 9 C -0.28 -13.08 5.64 71.24 0.40 -12.67 15 10 S 1.39 48.35 13.46 -56.49 -0.76 47.59 15 11 O -0.93 -44.29 16.90 -148.98 -2.52 -46.81 15 12 C -0.45 -13.53 5.61 22.27 0.12 -13.40 15 13 C -0.01 -0.13 9.75 22.27 0.22 0.09 15 14 C -0.12 -2.26 10.03 22.31 0.22 -2.03 15 15 C 0.09 2.26 7.31 22.41 0.16 2.42 15 16 F -0.13 -3.43 17.18 44.97 0.77 -2.66 15 17 C 0.02 0.79 7.31 22.41 0.16 0.95 15 18 F -0.14 -5.12 17.18 44.97 0.77 -4.35 15 19 C -0.09 -3.15 9.42 22.31 0.21 -2.94 15 20 H 0.27 14.55 8.31 -92.71 -0.77 13.78 15 21 H 0.08 3.62 8.14 -2.39 -0.02 3.60 15 22 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 15 23 H 0.21 1.71 8.06 -2.91 -0.02 1.69 15 24 H 0.20 1.80 8.06 -2.91 -0.02 1.77 15 25 H 0.12 4.81 7.46 -2.91 -0.02 4.79 15 Total: -1.00 -77.18 254.40 4.00 -73.18 By element: Atomic # 1 Polarization: -4.12 SS G_CDS: 1.22 Total: -2.90 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 2.20 Total: -54.70 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: 0.28 Total: -53.18 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -2.52 Total: -46.81 kcal Atomic # 9 Polarization: -8.55 SS G_CDS: 1.55 Total: -7.01 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -0.76 Total: 47.59 kcal Total: -77.18 4.00 -73.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084263686.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.336 kcal (2) G-P(sol) polarization free energy of solvation -77.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds