Wall clock time and date at job start Mon Mar 30 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99739 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.39960 * 293.53526 * 9 7 2 11 11 O 1.42100 * 106.40650 * 66.45676 * 9 7 2 12 12 N 1.65599 * 107.21634 * 180.02562 * 9 7 2 13 13 C 1.49298 * 126.11216 * 269.68889 * 12 9 7 14 14 C 1.50043 * 104.81223 * 187.34674 * 13 12 9 15 15 H 1.08998 * 109.83214 * 80.61175 * 14 13 12 16 16 C 1.50730 * 126.73045 * 216.43956 * 14 13 12 17 17 N 1.50185 * 102.13666 * 155.05600 * 16 14 13 18 18 C 1.49713 * 107.64342 * 334.69233 * 17 16 14 19 19 C 1.50124 * 104.73235 * 352.52576 * 18 17 16 20 20 H 1.09004 * 109.78893 * 279.79069 * 19 18 17 21 21 C 1.49776 * 126.11362 * 89.99540 * 12 9 7 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09004 * 110.37280 * 306.29373 * 13 12 9 24 24 H 1.09004 * 110.38144 * 68.64662 * 13 12 9 25 25 H 1.08994 * 110.86789 * 273.21855 * 16 14 13 26 26 H 1.09001 * 110.86939 * 36.89774 * 16 14 13 27 27 H 1.00894 * 111.00161 * 96.35664 * 17 16 14 28 28 H 1.08999 * 110.38706 * 233.71376 * 18 17 16 29 29 H 1.09000 * 110.38490 * 111.33830 * 18 17 16 30 30 H 1.09001 * 110.86484 * 323.45802 * 21 12 9 31 31 H 1.09001 * 110.86303 * 87.12049 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1682 -0.6489 -1.2491 11 8 4.1674 -0.6504 1.2503 12 7 4.2567 -2.7759 -0.0014 13 6 4.5230 -3.6157 1.2038 14 6 5.1085 -4.8872 0.6636 15 1 6.1670 -4.7439 0.4465 16 6 4.8812 -6.2803 1.1924 17 7 5.1449 -7.1254 -0.0208 18 6 4.8834 -6.2799 -1.2284 19 6 4.2911 -5.0118 -0.6855 20 1 3.2334 -5.1617 -0.4686 21 6 4.5184 -3.6177 -1.2122 22 1 -0.4850 0.8401 0.0004 23 1 5.2344 -3.1185 1.8632 24 1 3.5938 -3.8238 1.7344 25 1 5.5877 -6.5133 1.9890 26 1 3.8537 -6.4028 1.5350 27 1 6.0923 -7.4725 -0.0207 28 1 4.1756 -6.7755 -1.8928 29 1 5.8150 -6.0695 -1.7535 30 1 3.8114 -3.3835 -2.0081 31 1 5.5457 -3.4953 -1.5555 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085282972.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:14 Heat of formation + Delta-G solvation = -45.304703 kcal Electronic energy + Delta-G solvation = -16695.257734 eV Core-core repulsion = 13911.391068 eV Total energy + Delta-G solvation = -2783.866666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.18911 -35.65834 -35.26879 -34.45044 -33.03155 -30.34999 -29.23909 -26.39660 -26.33884 -23.46384 -20.36312 -20.12679 -18.72561 -17.41498 -16.63695 -16.56507 -15.84511 -15.21677 -14.47010 -14.20987 -13.80638 -13.47715 -13.03511 -12.88674 -12.70865 -12.52935 -12.14189 -11.64804 -11.46401 -11.34858 -11.10830 -10.76206 -10.67755 -10.64926 -10.51364 -10.13232 -9.82290 -9.21919 -9.17909 -8.67039 -8.31573 -6.81129 -5.34605 1.93010 3.05811 3.16472 3.25293 3.87896 3.94155 4.01122 4.16336 4.58156 4.68137 5.01667 5.30819 5.33721 5.36376 5.40312 5.51005 5.63267 5.66799 5.79709 5.87127 5.91795 6.03454 6.11376 6.27188 6.37390 6.47543 6.64104 7.08472 7.18786 7.48243 8.21506 8.69726 10.31404 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045766 B = 0.007367 C = 0.007211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.664475 B = 3799.812013 C = 3881.837650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.153 3.847 3 Si 0.801 3.199 4 H -0.246 1.246 5 H -0.220 1.220 6 H -0.254 1.254 7 C -1.015 5.015 8 H 0.120 0.880 9 S 2.691 3.309 10 O -1.004 7.004 11 O -1.007 7.007 12 N -1.020 6.020 13 C 0.148 3.852 14 C -0.152 4.152 15 H 0.077 0.923 16 C 0.067 3.933 17 N -0.683 5.683 18 C 0.066 3.934 19 C -0.137 4.137 20 H 0.092 0.908 21 C 0.151 3.849 22 H 0.281 0.719 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.336 0.664 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 -10.914 -0.107 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.142 1.142 6 H -0.178 1.178 7 C -1.150 5.150 8 H 0.138 0.862 9 S 2.795 3.205 10 O -0.994 6.994 11 O -0.997 6.997 12 N -0.857 5.857 13 C 0.022 3.978 14 C -0.173 4.173 15 H 0.095 0.905 16 C -0.062 4.062 17 N -0.311 5.311 18 C -0.064 4.064 19 C -0.158 4.158 20 H 0.110 0.890 21 C 0.025 3.975 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.101 0.899 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.804 -10.351 -0.113 13.589 hybrid contribution 0.239 1.111 0.019 1.137 sum 9.042 -9.240 -0.094 12.929 Atomic orbital electron populations 1.69992 1.06573 1.29033 1.39634 1.24439 0.94795 0.98799 0.88652 0.87878 0.83611 0.84567 0.81868 1.16976 1.14207 1.17796 1.30545 1.15728 1.02118 1.66599 0.86153 1.00971 0.77105 0.69271 0.73149 1.93459 1.85394 1.75232 1.45343 1.93399 1.85413 1.75451 1.45445 1.59897 1.85056 1.30039 1.10705 1.20627 1.00268 0.89403 0.87526 1.22853 1.00396 0.95548 0.98517 0.90471 1.22152 1.02666 0.89065 0.92366 1.63346 1.30770 1.35729 1.01267 1.21801 1.00206 0.91590 0.92766 1.22604 1.01778 0.94394 0.96992 0.88967 1.20972 1.00839 0.87838 0.87848 0.90892 0.90926 0.91300 0.90989 0.89682 0.84897 0.89889 0.92756 0.89928 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.02 13.96 55.43 0.77 -23.25 16 2 C 0.15 4.44 5.47 -17.82 -0.10 4.34 16 3 Si 0.80 20.77 26.54 -169.99 -4.51 16.26 16 4 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.22 -5.80 5.60 56.52 0.32 -5.48 16 6 H -0.25 -6.02 7.11 56.52 0.40 -5.62 16 7 C -1.02 -28.77 10.29 30.60 0.31 -28.46 16 8 H 0.12 3.46 8.06 -52.49 -0.42 3.04 16 9 S 2.69 68.51 4.47 -107.50 -0.48 68.03 16 10 O -1.00 -27.21 15.64 -57.17 -0.89 -28.10 16 11 O -1.01 -27.23 16.46 -57.17 -0.94 -28.17 16 12 N -1.02 -20.26 3.81 -112.50 -0.43 -20.69 16 13 C 0.15 2.41 6.92 -3.96 -0.03 2.38 16 14 C -0.15 -1.93 2.90 -90.34 -0.26 -2.19 16 15 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 16 C 0.07 0.70 7.44 -3.12 -0.02 0.68 16 17 N -0.68 -7.01 7.57 -111.80 -0.85 -7.86 16 18 C 0.07 0.70 7.44 -3.68 -0.03 0.67 16 19 C -0.14 -1.83 2.92 -90.29 -0.26 -2.10 16 20 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 21 C 0.15 2.45 6.92 -3.34 -0.02 2.43 16 22 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.34 2.79 8.94 -39.29 -0.35 2.44 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -32.88 265.29 -7.96 -40.85 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.22 Total: 1.17 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.41 Total: -22.24 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.50 Total: -51.79 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -1.84 Total: -56.27 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.51 Total: 16.26 kcal Atomic # 16 Polarization: 68.51 SS G_CDS: -0.48 Total: 68.03 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.88 -7.96 -40.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085282972.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.459 kcal (2) G-P(sol) polarization free energy of solvation -32.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds