Wall clock time and date at job start Mon Mar 30 2020 03:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00123 * 2 1 4 4 H 1.48503 * 109.47326 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47169 * 300.00291 * 3 2 1 6 6 H 1.48499 * 109.47074 * 60.00380 * 3 2 1 7 7 C 1.37882 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99975 * 179.97438 * 7 2 1 9 9 S 1.76200 * 120.00156 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40218 * 66.46237 * 9 7 2 11 11 O 1.42106 * 106.40275 * 293.54395 * 9 7 2 12 12 N 1.65599 * 107.21905 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00536 * 64.99671 * 12 9 7 14 14 C 1.50693 * 109.47256 * 165.00151 * 13 12 9 15 15 C 1.39775 * 126.09532 * 260.02635 * 14 13 12 16 16 N 1.30834 * 108.32685 * 179.73674 * 15 14 13 17 17 N 1.40067 * 108.38868 * 359.97438 * 16 15 14 18 18 H 0.97004 * 126.04602 * 179.97438 * 17 16 15 19 19 C 1.35253 * 107.91470 * 0.02562 * 17 16 15 20 20 N 1.39208 * 126.22109 * 180.02562 * 19 17 16 21 21 H 0.96998 * 119.99869 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99081 * 245.00313 * 12 9 7 23 23 H 1.08997 * 109.46622 * 45.00113 * 13 12 9 24 24 H 1.09007 * 109.47061 * 285.00540 * 13 12 9 25 25 H 1.08006 * 125.83447 * 359.70985 * 15 14 13 26 26 H 0.97002 * 119.99845 * 179.97438 * 20 19 17 27 27 H 0.97005 * 119.99698 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7951 -1.2501 11 8 0.4517 -2.7956 1.2494 12 7 2.2482 -3.9355 -0.0005 13 6 3.1394 -4.1090 1.1492 14 6 3.7946 -5.4641 1.0769 15 6 3.4095 -6.6040 1.7882 16 7 4.2105 -7.5846 1.4587 17 7 5.1360 -7.1040 0.5237 18 1 5.8471 -7.6171 0.1088 19 6 4.8637 -5.7978 0.3023 20 7 5.5507 -4.9492 -0.5613 21 1 -0.4850 0.8400 0.0004 22 1 2.3170 -4.5325 -0.7620 23 1 2.5623 -4.0331 2.0708 24 1 3.9055 -3.3337 1.1354 25 1 2.5908 -6.6648 2.4901 26 1 5.2765 -4.0231 -0.6512 27 1 6.3037 -5.2840 -1.0730 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086490930.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:35 Heat of formation + Delta-G solvation = -19.774554 kcal Electronic energy + Delta-G solvation = -15818.399548 eV Core-core repulsion = 12932.099609 eV Total energy + Delta-G solvation = -2886.299939 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07846 -35.20056 -34.84227 -34.21501 -33.84826 -33.02859 -30.83604 -28.52139 -26.09061 -24.53233 -21.82413 -19.94015 -18.93212 -18.18412 -17.26440 -16.38494 -15.97020 -15.29517 -14.91464 -14.86470 -14.35642 -14.01221 -13.36161 -13.21628 -12.79997 -12.04678 -11.79974 -11.22049 -11.18133 -11.07154 -10.69214 -10.57396 -10.23629 -10.17921 -10.09344 -9.22645 -9.12454 -8.90824 -8.35963 -7.59991 -6.66206 -5.27657 2.15922 2.41307 2.69430 3.04517 3.06887 3.16481 3.22294 3.92040 4.10044 4.68117 4.92196 5.03200 5.41837 5.57995 5.81215 5.92832 6.20341 6.37362 6.60867 6.66293 6.86918 7.02797 7.35647 7.36975 7.64694 7.95688 7.98472 8.08303 8.92839 10.27813 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.035252 B = 0.006860 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.088719 B = 4080.466909 C = 4482.634606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.920 3.080 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.272 1.272 7 C -1.021 5.021 8 H 0.101 0.899 9 S 2.716 3.284 10 O -1.011 7.011 11 O -1.008 7.008 12 N -1.135 6.135 13 C 0.213 3.787 14 C -0.313 4.313 15 C 0.097 3.903 16 N -0.316 5.316 17 N -0.508 5.508 18 H 0.431 0.569 19 C 0.378 3.622 20 N -0.854 5.854 21 H 0.290 0.710 22 H 0.400 0.600 23 H 0.081 0.919 24 H 0.055 0.945 25 H 0.184 0.816 26 H 0.422 0.578 27 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.018 -7.834 -0.058 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.197 1.197 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.816 3.184 10 O -1.001 7.001 11 O -0.998 6.998 12 N -0.890 5.890 13 C 0.086 3.914 14 C -0.331 4.331 15 C -0.090 4.090 16 N -0.139 5.139 17 N -0.223 5.223 18 H 0.274 0.726 19 C 0.148 3.852 20 N -0.404 5.404 21 H 0.100 0.900 22 H 0.230 0.770 23 H 0.099 0.901 24 H 0.074 0.926 25 H 0.201 0.799 26 H 0.255 0.745 27 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 11.085 -9.011 0.387 14.291 hybrid contribution 1.477 1.787 -1.015 2.530 sum 12.562 -7.224 -0.628 14.504 Atomic orbital electron populations 1.69911 1.06780 1.30524 1.40253 1.24743 0.94429 1.00779 0.88592 0.86153 0.80367 0.80620 0.78485 1.18710 1.19761 1.19665 1.30616 1.06043 1.12074 1.66657 0.88039 1.00339 0.72155 0.73207 0.72744 1.93367 1.73225 1.87751 1.45768 1.93351 1.72971 1.87562 1.45942 1.56097 1.55870 1.50523 1.26504 1.19067 0.91864 0.90946 0.89552 1.19375 1.03854 0.99081 1.10777 1.23613 0.97626 0.89689 0.98089 1.77391 1.04956 1.21794 1.09733 1.46046 1.30426 1.06781 1.39025 0.72584 1.17791 0.92417 0.83284 0.91663 1.41666 1.37161 1.13249 1.48308 0.90011 0.76997 0.90079 0.92645 0.79869 0.74513 0.77501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.74 13.19 55.43 0.73 -24.01 15 2 C 0.13 3.64 5.46 -17.82 -0.10 3.55 15 3 Si 0.92 20.21 29.54 -169.99 -5.02 15.19 15 4 H -0.26 -5.51 7.11 56.52 0.40 -5.10 15 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 15 7 C -1.02 -27.34 9.72 30.60 0.30 -27.05 15 8 H 0.10 2.43 7.81 -52.49 -0.41 2.02 15 9 S 2.72 70.91 5.02 -107.50 -0.54 70.37 15 10 O -1.01 -29.56 18.02 -57.17 -1.03 -30.59 15 11 O -1.01 -29.24 17.49 -57.17 -1.00 -30.23 15 12 N -1.13 -22.03 5.99 -11.66 -0.07 -22.10 15 13 C 0.21 3.59 6.40 -5.20 -0.03 3.56 15 14 C -0.31 -4.59 5.52 -104.79 -0.58 -5.17 15 15 C 0.10 1.39 11.95 -17.40 -0.21 1.18 15 16 N -0.32 -4.46 12.69 30.61 0.39 -4.07 15 17 N -0.51 -5.82 7.37 31.10 0.23 -5.59 15 18 H 0.43 3.45 8.96 -182.62 -1.64 1.81 15 19 C 0.38 4.65 8.36 -153.40 -1.28 3.37 15 20 N -0.85 -7.85 9.11 31.11 0.28 -7.57 15 21 H 0.29 7.60 8.31 -40.82 -0.34 7.26 15 22 H 0.40 7.05 8.65 -34.46 -0.30 6.76 15 23 H 0.08 1.43 7.75 -51.93 -0.40 1.03 15 24 H 0.06 0.87 8.00 -51.93 -0.42 0.45 15 25 H 0.18 2.23 8.06 -52.48 -0.42 1.81 15 26 H 0.42 4.09 8.50 -40.82 -0.35 3.75 15 27 H 0.40 2.41 8.96 -40.82 -0.37 2.04 15 LS Contribution 262.14 15.07 3.95 3.95 Total: -1.00 -36.78 262.14 -7.41 -44.19 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -3.43 Total: 11.03 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.90 Total: -20.57 kcal Atomic # 7 Polarization: -64.90 SS G_CDS: 1.56 Total: -63.33 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -2.03 Total: -60.83 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 70.91 SS G_CDS: -0.54 Total: 70.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -36.78 -7.41 -44.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086490930.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.417 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds