Wall clock time and date at job start Mon Mar 30 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40065 * 126.08058 * 2 1 4 4 C 1.30977 * 108.47382 * 180.02562 * 3 2 1 5 5 C 1.39958 * 108.45091 * 359.97438 * 4 3 2 6 6 N 1.41387 * 126.09637 * 180.02562 * 5 4 3 7 7 C 1.36082 * 126.08139 * 180.35599 * 2 1 3 8 8 N 1.39712 * 126.28388 * 359.95732 * 7 2 1 9 9 S 1.65592 * 120.00069 * 57.96764 * 8 7 2 10 10 O 1.42099 * 106.40671 * 174.99157 * 9 8 7 11 11 O 1.42100 * 106.40214 * 307.91538 * 9 8 7 12 12 C 1.76203 * 107.22123 * 61.44929 * 9 8 7 13 13 H 1.08001 * 119.99846 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00460 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99587 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00107 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46898 * 60.00683 * 16 14 12 18 18 H 1.48496 * 109.47063 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47514 * 300.00712 * 16 14 12 20 20 H 1.08991 * 109.47540 * 89.97722 * 1 2 3 21 21 H 1.09002 * 109.46744 * 209.97552 * 1 2 3 22 22 H 1.09004 * 109.46710 * 329.97494 * 1 2 3 23 23 H 1.08002 * 125.77479 * 180.02562 * 4 3 2 24 24 H 0.96997 * 120.00090 * 355.00684 * 6 5 4 25 25 H 0.97001 * 119.99792 * 174.74265 * 6 5 4 26 26 H 0.97002 * 120.00134 * 237.96347 * 8 7 2 27 27 H 0.97006 * 119.99475 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1320 0.0000 4 6 3.5383 0.7358 -0.0006 5 6 3.5589 -0.6636 -0.0003 6 7 4.7135 -1.4797 -0.0003 7 6 2.2664 -1.0998 -0.0068 8 7 1.8431 -2.4312 -0.0143 9 16 0.8667 -2.9828 -1.2326 10 8 0.7134 -4.3799 -1.0228 11 8 -0.2306 -2.0829 -1.3060 12 6 1.7605 -2.8013 -2.7402 13 1 2.7591 -2.3900 -2.7298 14 6 1.1857 -3.1853 -3.9331 15 7 -0.0301 -3.6866 -3.9458 16 14 2.1331 -2.9921 -5.5314 17 1 3.3850 -3.7880 -5.4640 18 1 1.2998 -3.4742 -6.6621 19 1 2.4675 -1.5602 -5.7388 20 1 -0.3634 0.0004 -1.0276 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5143 23 1 4.4051 1.3800 -0.0003 24 1 5.5925 -1.0763 -0.0735 25 1 4.6267 -2.4427 0.0769 26 1 2.1213 -3.0326 0.6942 27 1 -0.4347 -3.9564 -4.7851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087419477.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:56 Heat of formation + Delta-G solvation = -4.387903 kcal Electronic energy + Delta-G solvation = -16561.660453 eV Core-core repulsion = 13676.027729 eV Total energy + Delta-G solvation = -2885.632723 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.64082 -35.49416 -34.41664 -34.24339 -33.86018 -33.10847 -31.16255 -27.28303 -26.18355 -25.49388 -20.88919 -20.31296 -19.11854 -17.68092 -17.06792 -16.56704 -15.98978 -15.21072 -14.99150 -14.50834 -14.04543 -13.75107 -13.61544 -12.99437 -12.34921 -12.20508 -11.95921 -11.34172 -11.22937 -10.91229 -10.70107 -10.63501 -10.47874 -10.24555 -10.03052 -9.70847 -9.28088 -8.93632 -8.43609 -6.78518 -6.62762 -5.37629 1.96182 2.41188 2.96696 3.07059 3.10975 3.17534 3.36674 4.01654 4.46216 4.57539 4.60762 5.21452 5.48273 5.70131 5.81681 5.93447 6.20338 6.24549 6.45027 6.66838 6.85125 7.25974 7.36917 7.74210 7.93835 8.04477 8.15551 8.42009 8.83901 10.17729 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.010666 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.827661 B = 2624.445694 C = 2961.463459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.359 5.359 3 N -0.275 5.275 4 C 0.005 3.995 5 C 0.049 3.951 6 N -0.874 5.874 7 C 0.251 3.749 8 N -1.046 6.046 9 S 2.702 3.298 10 O -0.997 6.997 11 O -0.996 6.996 12 C -1.008 5.008 13 H 0.104 0.896 14 C 0.134 3.866 15 N -0.846 5.846 16 Si 0.922 3.078 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 H 0.101 0.899 21 H 0.086 0.914 22 H 0.070 0.930 23 H 0.178 0.822 24 H 0.394 0.606 25 H 0.394 0.606 26 H 0.413 0.587 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 4.707 6.060 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.149 5.149 3 N -0.101 5.101 4 C -0.181 4.181 5 C -0.063 4.063 6 N -0.423 5.423 7 C 0.026 3.974 8 N -0.797 5.797 9 S 2.804 3.196 10 O -0.987 6.987 11 O -0.986 6.986 12 C -1.143 5.143 13 H 0.123 0.877 14 C -0.084 4.084 15 N -0.476 5.476 16 Si 0.746 3.254 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.188 1.188 20 H 0.119 0.881 21 H 0.105 0.895 22 H 0.088 0.912 23 H 0.195 0.805 24 H 0.221 0.779 25 H 0.222 0.778 26 H 0.248 0.752 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.177 5.406 5.990 9.086 hybrid contribution 1.901 -1.031 -0.909 2.346 sum 6.078 4.375 5.081 9.050 Atomic orbital electron populations 1.22114 0.72865 1.02357 1.05686 1.48482 1.06733 1.02288 1.57432 1.77245 1.00803 1.07603 1.24482 1.23151 0.95608 0.92623 1.06701 1.17267 0.86538 0.90665 1.11844 1.41451 1.03700 1.07346 1.89769 1.16542 0.88382 0.80895 1.11580 1.53362 1.71234 1.12074 1.43010 1.00991 0.72991 0.72293 0.73333 1.93398 1.86025 1.32821 1.86504 1.93372 1.52522 1.65739 1.86980 1.30316 1.15677 1.56777 1.11503 0.87746 1.24724 0.93931 0.89145 1.00569 1.69877 1.13108 1.33907 1.30735 0.86166 0.80041 0.79737 0.79444 1.18803 1.20110 1.18838 0.88107 0.89543 0.91165 0.80476 0.77913 0.77830 0.75232 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.06 9.38 59.85 0.56 2.62 15 2 N -0.36 -7.09 4.05 -66.82 -0.27 -7.36 15 3 N -0.28 -5.11 12.57 30.67 0.39 -4.72 15 4 C 0.01 0.09 12.02 -17.27 -0.21 -0.12 15 5 C 0.05 0.85 7.31 -83.46 -0.61 0.24 15 6 N -0.87 -11.93 9.23 32.49 0.30 -11.63 15 7 C 0.25 4.92 7.12 -152.08 -1.08 3.83 15 8 N -1.05 -20.63 5.82 31.41 0.18 -20.45 15 9 S 2.70 68.32 4.99 -107.50 -0.54 67.79 15 10 O -1.00 -27.94 18.02 -57.17 -1.03 -28.97 15 11 O -1.00 -26.25 12.96 -57.17 -0.74 -26.99 15 12 C -1.01 -27.38 9.60 30.60 0.29 -27.09 15 13 H 0.10 2.70 7.81 -52.49 -0.41 2.29 15 14 C 0.13 3.69 5.46 -17.82 -0.10 3.60 15 15 N -0.85 -24.28 13.19 55.43 0.73 -23.55 15 16 Si 0.92 20.65 29.54 -169.99 -5.02 15.63 15 17 H -0.26 -5.70 7.11 56.52 0.40 -5.30 15 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 19 H -0.26 -5.82 7.11 56.52 0.40 -5.42 15 20 H 0.10 2.08 6.82 -51.93 -0.35 1.72 15 21 H 0.09 1.58 7.11 -51.93 -0.37 1.21 15 22 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.18 2.11 8.06 -52.49 -0.42 1.69 15 24 H 0.39 4.19 8.96 -40.82 -0.37 3.82 15 25 H 0.39 5.18 8.96 -40.82 -0.37 4.82 15 26 H 0.41 6.80 8.96 -34.46 -0.31 6.49 15 27 H 0.29 7.57 8.31 -40.82 -0.34 7.24 15 LS Contribution 255.69 15.07 3.85 3.85 Total: -1.00 -34.14 255.69 -5.44 -39.59 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -2.15 Total: 13.73 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.14 Total: -16.92 kcal Atomic # 7 Polarization: -69.03 SS G_CDS: 1.33 Total: -67.70 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -1.77 Total: -55.96 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 68.32 SS G_CDS: -0.54 Total: 67.79 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.14 -5.44 -39.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087419477.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.198 kcal (2) G-P(sol) polarization free energy of solvation -34.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds