Wall clock time and date at job start Mon Mar 30 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40065 * 126.08058 * 2 1 4 4 C 1.30977 * 108.47382 * 180.02562 * 3 2 1 5 5 C 1.39958 * 108.45091 * 359.97438 * 4 3 2 6 6 N 1.41387 * 126.09637 * 180.02562 * 5 4 3 7 7 C 1.36082 * 126.08139 * 180.35599 * 2 1 3 8 8 N 1.39712 * 126.28388 * 359.95732 * 7 2 1 9 9 S 1.65592 * 120.00069 * 57.96764 * 8 7 2 10 10 O 1.42099 * 106.40671 * 174.99157 * 9 8 7 11 11 O 1.42100 * 106.40214 * 307.91538 * 9 8 7 12 12 C 1.76203 * 107.22123 * 61.44929 * 9 8 7 13 13 H 1.08001 * 119.99846 * 0.02562 * 12 9 8 14 14 C 1.37874 * 120.00460 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99587 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 120.00107 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46898 * 60.00683 * 16 14 12 18 18 H 1.48496 * 109.47063 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47514 * 300.00712 * 16 14 12 20 20 H 1.08991 * 109.47540 * 89.97722 * 1 2 3 21 21 H 1.09002 * 109.46744 * 209.97552 * 1 2 3 22 22 H 1.09004 * 109.46710 * 329.97494 * 1 2 3 23 23 H 1.08002 * 125.77479 * 180.02562 * 4 3 2 24 24 H 0.96997 * 120.00090 * 355.00684 * 6 5 4 25 25 H 0.97001 * 119.99792 * 174.74265 * 6 5 4 26 26 H 0.97002 * 120.00134 * 237.96347 * 8 7 2 27 27 H 0.97006 * 119.99475 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2898 1.1320 0.0000 4 6 3.5383 0.7358 -0.0006 5 6 3.5589 -0.6636 -0.0003 6 7 4.7135 -1.4797 -0.0003 7 6 2.2664 -1.0998 -0.0068 8 7 1.8431 -2.4312 -0.0143 9 16 0.8667 -2.9828 -1.2326 10 8 0.7134 -4.3799 -1.0228 11 8 -0.2306 -2.0829 -1.3060 12 6 1.7605 -2.8013 -2.7402 13 1 2.7591 -2.3900 -2.7298 14 6 1.1857 -3.1853 -3.9331 15 7 -0.0301 -3.6866 -3.9458 16 14 2.1331 -2.9921 -5.5314 17 1 3.3850 -3.7880 -5.4640 18 1 1.2998 -3.4742 -6.6621 19 1 2.4675 -1.5602 -5.7388 20 1 -0.3634 0.0004 -1.0276 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3633 0.8898 0.5143 23 1 4.4051 1.3800 -0.0003 24 1 5.5925 -1.0763 -0.0735 25 1 4.6267 -2.4427 0.0769 26 1 2.1213 -3.0326 0.6942 27 1 -0.4347 -3.9564 -4.7851 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087419477.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:56 Heat of formation + Delta-G solvation = -33.699283 kcal Electronic energy + Delta-G solvation = -16562.931490 eV Core-core repulsion = 13676.027729 eV Total energy + Delta-G solvation = -2886.903760 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.02608 -37.53686 -36.27455 -35.94607 -35.31606 -35.07588 -32.53791 -28.71580 -28.26532 -26.85655 -22.33540 -21.74358 -21.04850 -19.43349 -18.61207 -18.48658 -17.35611 -17.01999 -16.41445 -16.10653 -15.84337 -15.62403 -14.99324 -14.37516 -14.04379 -13.86533 -13.54483 -13.35381 -13.03018 -12.82079 -12.53155 -12.35876 -12.20567 -12.06890 -11.40245 -11.27918 -11.24033 -10.91649 -9.93035 -8.79517 -7.94113 -7.49255 0.09405 0.96657 1.31296 1.33243 1.45839 1.57063 2.04076 2.17655 2.55888 2.83676 3.31772 3.57209 3.91048 4.22219 4.40463 4.44775 4.62406 4.74628 4.91032 5.09572 5.25066 5.61481 5.84248 5.94516 6.29749 6.75218 6.76784 6.87675 7.37130 8.17342 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.010666 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.827661 B = 2624.445694 C = 2961.463459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.378 5.378 3 N -0.288 5.288 4 C 0.016 3.984 5 C 0.060 3.940 6 N -0.861 5.861 7 C 0.208 3.792 8 N -1.028 6.028 9 S 2.714 3.286 10 O -1.033 7.033 11 O -1.015 7.015 12 C -1.030 5.030 13 H 0.112 0.888 14 C 0.077 3.923 15 N -0.889 5.889 16 Si 0.984 3.016 17 H -0.250 1.250 18 H -0.262 1.262 19 H -0.258 1.258 20 H 0.072 0.928 21 H 0.080 0.920 22 H 0.101 0.899 23 H 0.223 0.777 24 H 0.411 0.589 25 H 0.398 0.602 26 H 0.426 0.574 27 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.609 5.748 5.807 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.170 5.170 3 N -0.113 5.113 4 C -0.171 4.171 5 C -0.054 4.054 6 N -0.411 5.411 7 C -0.015 4.015 8 N -0.783 5.783 9 S 2.815 3.185 10 O -1.024 7.024 11 O -1.004 7.004 12 C -1.164 5.164 13 H 0.130 0.870 14 C -0.137 4.137 15 N -0.521 5.521 16 Si 0.803 3.197 17 H -0.173 1.173 18 H -0.186 1.186 19 H -0.182 1.182 20 H 0.090 0.910 21 H 0.098 0.902 22 H 0.119 0.881 23 H 0.240 0.760 24 H 0.241 0.759 25 H 0.226 0.774 26 H 0.265 0.735 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.471 6.419 5.757 10.780 hybrid contribution 1.295 -1.276 -0.726 1.958 sum 7.766 5.143 5.030 10.586 Atomic orbital electron populations 1.22007 0.73129 1.03605 1.04189 1.48544 1.06921 1.02605 1.58908 1.77206 1.01805 1.07714 1.24611 1.23899 0.96047 0.92677 1.04488 1.17523 0.86544 0.91560 1.09754 1.41491 1.03589 1.07419 1.88584 1.16857 0.89547 0.80413 1.14702 1.52561 1.70823 1.12863 1.42079 1.00419 0.73157 0.71348 0.73543 1.93341 1.86831 1.35008 1.87172 1.93358 1.53829 1.65765 1.87479 1.30678 1.16222 1.56691 1.12785 0.87029 1.25864 0.94815 0.88458 1.04557 1.69953 1.14813 1.35140 1.32149 0.85240 0.79175 0.80134 0.75154 1.17313 1.18564 1.18201 0.90955 0.90165 0.88108 0.76024 0.75870 0.77423 0.73544 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.20 9.38 127.77 1.20 5.40 15 2 N -0.38 -14.66 4.05 -365.32 -1.48 -16.14 15 3 N -0.29 -10.10 12.57 -56.89 -0.71 -10.81 15 4 C 0.02 0.46 12.02 85.24 1.02 1.49 15 5 C 0.06 1.91 7.31 37.59 0.27 2.18 15 6 N -0.86 -20.74 9.23 -51.12 -0.47 -21.22 15 7 C 0.21 7.94 7.12 131.05 0.93 8.88 15 8 N -1.03 -40.38 5.82 -54.55 -0.32 -40.70 15 9 S 2.71 139.56 4.99 -56.49 -0.28 139.28 15 10 O -1.03 -59.25 18.02 -128.00 -2.31 -61.55 15 11 O -1.01 -55.05 12.96 -128.00 -1.66 -56.71 15 12 C -1.03 -55.98 9.60 67.73 0.65 -55.33 15 13 H 0.11 5.69 7.81 -2.91 -0.02 5.67 15 14 C 0.08 4.20 5.46 84.65 0.46 4.66 15 15 N -0.89 -51.72 13.19 21.45 0.28 -51.43 15 16 Si 0.98 41.33 29.54 68.60 2.03 43.36 15 17 H -0.25 -9.82 7.11 99.48 0.71 -9.12 15 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 19 H -0.26 -10.48 7.11 99.48 0.71 -9.78 15 20 H 0.07 3.08 6.82 -2.39 -0.02 3.07 15 21 H 0.08 3.02 7.11 -2.39 -0.02 3.00 15 22 H 0.10 3.01 8.14 -2.39 -0.02 2.99 15 23 H 0.22 4.16 8.06 -2.91 -0.02 4.13 15 24 H 0.41 7.12 8.96 -92.71 -0.83 6.29 15 25 H 0.40 9.41 8.96 -92.71 -0.83 8.57 15 26 H 0.43 13.91 8.96 -96.75 -0.87 13.05 15 27 H 0.30 15.71 8.31 -92.70 -0.77 14.94 15 Total: -1.00 -73.73 255.69 -1.65 -75.38 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -1.28 Total: 33.28 kcal Atomic # 6 Polarization: -37.27 SS G_CDS: 4.54 Total: -32.73 kcal Atomic # 7 Polarization: -137.60 SS G_CDS: -2.70 Total: -140.30 kcal Atomic # 8 Polarization: -114.30 SS G_CDS: -3.96 Total: -118.26 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 139.56 SS G_CDS: -0.28 Total: 139.28 kcal Total: -73.73 -1.65 -75.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087419477.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.682 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds