Wall clock time and date at job start Mon Mar 30 2020 03:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30980 * 125.77420 * 2 1 4 4 N 1.40061 * 108.47079 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.08244 * 179.97438 * 4 3 2 6 6 C 1.36085 * 107.84208 * 0.02562 * 4 3 2 7 7 N 1.39711 * 126.28577 * 179.73902 * 6 4 3 8 8 S 1.65595 * 120.00173 * 35.02355 * 7 6 4 9 9 O 1.42097 * 106.40088 * 178.54157 * 8 7 6 10 10 O 1.42105 * 106.40341 * 311.46196 * 8 7 6 11 11 C 1.76200 * 107.21939 * 64.99944 * 8 7 6 12 12 H 1.08005 * 119.99675 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00130 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99888 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99765 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47050 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46729 * 120.00055 * 15 13 11 18 18 H 1.48502 * 109.46989 * 240.00027 * 15 13 11 19 19 C 1.36407 * 107.42963 * 0.02562 * 6 4 3 20 20 N 1.41386 * 126.09824 * 180.02562 * 19 6 4 21 21 H 1.09003 * 109.47077 * 89.97089 * 1 2 3 22 22 H 1.08992 * 109.47080 * 209.97203 * 1 2 3 23 23 H 1.09002 * 109.47055 * 329.97437 * 1 2 3 24 24 H 0.97003 * 119.99483 * 215.02527 * 7 6 4 25 25 H 0.97002 * 119.99819 * 179.97438 * 14 13 11 26 26 H 0.97003 * 120.00234 * 359.97438 * 20 19 6 27 27 H 0.97004 * 120.00265 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0627 0.0000 4 7 3.6099 0.6461 -0.0006 5 1 4.3885 1.2246 -0.0011 6 6 3.6227 -0.7147 -0.0015 7 7 4.7566 -1.5309 -0.0075 8 16 6.1186 -1.0620 0.8093 9 8 7.0671 -2.1067 0.6409 10 8 6.3700 0.2844 0.4309 11 6 5.7134 -1.0295 2.5238 12 1 4.7172 -1.2919 2.8483 13 6 6.6683 -0.6702 3.4512 14 7 7.8817 -0.3522 3.0562 15 14 6.2388 -0.6364 5.2689 16 1 4.8197 -1.0348 5.4496 17 1 7.1158 -1.5842 6.0023 18 1 6.4397 0.7359 5.7996 19 6 2.3252 -1.1355 -0.0021 20 7 1.8852 -2.4792 -0.0026 21 1 -0.3633 0.0005 -1.0277 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5142 24 1 4.7459 -2.3722 -0.4902 25 1 8.5534 -0.0990 3.7086 26 1 2.5326 -3.2015 -0.0030 27 1 0.9359 -2.6787 -0.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087419505.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:56 Heat of formation + Delta-G solvation = -22.869303 kcal Electronic energy + Delta-G solvation = -16194.177683 eV Core-core repulsion = 13307.743546 eV Total energy + Delta-G solvation = -2886.434137 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75290 -35.58560 -34.63228 -34.29251 -33.88246 -33.20207 -31.07314 -27.39366 -26.88757 -26.26624 -20.96880 -19.84869 -19.06672 -18.16819 -17.20730 -16.57026 -16.28301 -15.15502 -14.81631 -14.58603 -14.17920 -13.98410 -13.73275 -12.73558 -12.63222 -12.32138 -12.16181 -11.39841 -11.30287 -11.02700 -10.73967 -10.64210 -10.60548 -10.52830 -10.43300 -10.07941 -9.36622 -9.02957 -8.47656 -6.85800 -6.62006 -5.46554 1.87729 2.37494 3.00391 3.08188 3.15064 3.18711 3.32956 3.97279 4.36071 4.48497 4.54317 5.15590 5.27024 5.52183 5.68793 5.74214 5.94088 6.04344 6.10654 6.50202 6.79368 7.20642 7.42458 7.84750 7.86558 7.95317 8.14281 8.38215 8.76798 10.11043 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.008933 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.331640 B = 3133.734626 C = 3526.442847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.042 3.958 3 N -0.275 5.275 4 N -0.465 5.465 5 H 0.454 0.546 6 C 0.274 3.726 7 N -1.043 6.043 8 S 2.702 3.298 9 O -0.991 6.991 10 O -1.003 7.003 11 C -1.011 5.011 12 H 0.107 0.893 13 C 0.133 3.867 14 N -0.844 5.844 15 Si 0.925 3.075 16 H -0.261 1.261 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.029 3.971 20 N -0.876 5.876 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.419 0.581 25 H 0.293 0.707 26 H 0.392 0.608 27 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 -2.732 -3.653 12.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.126 4.126 3 N -0.104 5.104 4 N -0.187 5.187 5 H 0.304 0.696 6 C 0.047 3.953 7 N -0.792 5.792 8 S 2.803 3.197 9 O -0.981 6.981 10 O -0.992 6.992 11 C -1.146 5.146 12 H 0.125 0.875 13 C -0.085 4.085 14 N -0.473 5.473 15 Si 0.748 3.252 16 H -0.185 1.185 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.083 4.083 20 N -0.425 5.425 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.253 0.747 25 H 0.103 0.897 26 H 0.220 0.780 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.305 -0.962 -3.983 11.090 hybrid contribution -0.051 -1.446 1.221 1.894 sum -10.356 -2.409 -2.762 10.985 Atomic orbital electron populations 1.20032 0.87108 1.02866 1.02306 1.21665 0.96509 0.89274 1.05164 1.77217 0.85915 1.21307 1.25912 1.46429 1.07566 1.03499 1.61161 0.69643 1.16677 0.87208 0.83029 1.08408 1.53492 1.28329 1.30377 1.66991 1.01044 0.69877 0.72927 0.75869 1.93408 1.57836 1.58549 1.88278 1.93311 1.82752 1.37818 1.85325 1.30382 1.07253 1.61535 1.15411 0.87525 1.24760 0.92931 0.88726 1.02100 1.69887 1.03140 1.36321 1.37985 0.86052 0.79815 0.78749 0.80552 1.18488 1.19469 1.19468 1.16897 0.89576 0.86718 1.15118 1.41373 1.08476 1.01641 1.91056 0.91090 0.91149 0.90950 0.74655 0.89706 0.78037 0.77930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.29 36.00 0.37 -0.35 15 2 C 0.04 0.68 7.21 -82.31 -0.59 0.08 15 3 N -0.28 -5.16 12.69 33.71 0.43 -4.73 15 4 N -0.47 -9.44 7.19 31.40 0.23 -9.22 15 5 H 0.45 9.48 7.11 -182.63 -1.30 8.18 15 6 C 0.27 5.37 7.61 -152.08 -1.16 4.21 15 7 N -1.04 -20.55 5.90 31.41 0.19 -20.36 15 8 S 2.70 68.70 4.99 -107.50 -0.54 68.16 15 9 O -0.99 -27.70 18.02 -57.17 -1.03 -28.73 15 10 O -1.00 -27.29 15.88 -57.17 -0.91 -28.20 15 11 C -1.01 -27.31 9.68 30.60 0.30 -27.02 15 12 H 0.11 2.74 7.81 -52.48 -0.41 2.33 15 13 C 0.13 3.64 5.46 -17.82 -0.10 3.55 15 14 N -0.84 -24.10 13.19 55.43 0.73 -23.36 15 15 Si 0.92 20.47 29.54 -169.99 -5.02 15.45 15 16 H -0.26 -5.66 7.11 56.52 0.40 -5.26 15 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 19 C 0.03 0.49 7.25 -83.46 -0.61 -0.12 15 20 N -0.88 -11.19 9.23 32.49 0.30 -10.89 15 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.07 0.65 7.68 -51.93 -0.40 0.25 15 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 24 H 0.42 6.80 8.95 -34.47 -0.31 6.49 15 25 H 0.29 7.49 8.31 -40.82 -0.34 7.15 15 26 H 0.39 4.64 8.96 -40.82 -0.37 4.28 15 27 H 0.39 3.90 8.35 -40.82 -0.34 3.56 15 LS Contribution 258.92 15.07 3.90 3.90 Total: -1.00 -34.11 258.92 -6.61 -40.73 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -3.10 Total: 16.89 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -1.79 Total: -19.64 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: 1.87 Total: -68.56 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -1.94 Total: -56.93 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 68.70 SS G_CDS: -0.54 Total: 68.16 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.11 -6.61 -40.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087419505.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.857 kcal (2) G-P(sol) polarization free energy of solvation -34.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds