Wall clock time and date at job start Mon Mar 30 2020 03:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30980 * 125.77420 * 2 1 4 4 N 1.40061 * 108.47079 * 180.02562 * 3 2 1 5 5 H 0.96997 * 126.08244 * 179.97438 * 4 3 2 6 6 C 1.36085 * 107.84208 * 0.02562 * 4 3 2 7 7 N 1.39711 * 126.28577 * 179.73902 * 6 4 3 8 8 S 1.65595 * 120.00173 * 35.02355 * 7 6 4 9 9 O 1.42097 * 106.40088 * 178.54157 * 8 7 6 10 10 O 1.42105 * 106.40341 * 311.46196 * 8 7 6 11 11 C 1.76200 * 107.21939 * 64.99944 * 8 7 6 12 12 H 1.08005 * 119.99675 * 0.02562 * 11 8 7 13 13 C 1.37875 * 120.00130 * 179.97438 * 11 8 7 14 14 N 1.31513 * 119.99888 * 359.97438 * 13 11 8 15 15 Si 1.86804 * 119.99765 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47050 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46729 * 120.00055 * 15 13 11 18 18 H 1.48502 * 109.46989 * 240.00027 * 15 13 11 19 19 C 1.36407 * 107.42963 * 0.02562 * 6 4 3 20 20 N 1.41386 * 126.09824 * 180.02562 * 19 6 4 21 21 H 1.09003 * 109.47077 * 89.97089 * 1 2 3 22 22 H 1.08992 * 109.47080 * 209.97203 * 1 2 3 23 23 H 1.09002 * 109.47055 * 329.97437 * 1 2 3 24 24 H 0.97003 * 119.99483 * 215.02527 * 7 6 4 25 25 H 0.97002 * 119.99819 * 179.97438 * 14 13 11 26 26 H 0.97003 * 120.00234 * 359.97438 * 20 19 6 27 27 H 0.97004 * 120.00265 * 179.97438 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0627 0.0000 4 7 3.6099 0.6461 -0.0006 5 1 4.3885 1.2246 -0.0011 6 6 3.6227 -0.7147 -0.0015 7 7 4.7566 -1.5309 -0.0075 8 16 6.1186 -1.0620 0.8093 9 8 7.0671 -2.1067 0.6409 10 8 6.3700 0.2844 0.4309 11 6 5.7134 -1.0295 2.5238 12 1 4.7172 -1.2919 2.8483 13 6 6.6683 -0.6702 3.4512 14 7 7.8817 -0.3522 3.0562 15 14 6.2388 -0.6364 5.2689 16 1 4.8197 -1.0348 5.4496 17 1 7.1158 -1.5842 6.0023 18 1 6.4397 0.7359 5.7996 19 6 2.3252 -1.1355 -0.0021 20 7 1.8852 -2.4792 -0.0026 21 1 -0.3633 0.0005 -1.0277 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5142 24 1 4.7459 -2.3722 -0.4902 25 1 8.5534 -0.0990 3.7086 26 1 2.5326 -3.2015 -0.0030 27 1 0.9359 -2.6787 -0.0026 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087419505.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:55 Heat of formation + Delta-G solvation = -52.873714 kcal Electronic energy + Delta-G solvation = -16195.478772 eV Core-core repulsion = 13307.743546 eV Total energy + Delta-G solvation = -2887.735226 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.13505 -37.66133 -36.39523 -36.16593 -35.25319 -35.11477 -32.31794 -28.58017 -28.34652 -28.22739 -22.43599 -21.40690 -20.78896 -19.80943 -18.86784 -18.39121 -17.72938 -17.07714 -16.21878 -16.13475 -15.82464 -15.68598 -15.29486 -14.10316 -13.91660 -13.70874 -13.41550 -13.25826 -13.08725 -12.80051 -12.73017 -12.66743 -12.35568 -12.25400 -11.67315 -11.49001 -11.32400 -11.03274 -9.91880 -8.85733 -7.92515 -7.57637 -0.02381 0.94435 1.28977 1.30537 1.48230 1.75575 1.97038 2.15412 2.49855 2.71139 3.28772 3.48705 3.93070 4.05302 4.28332 4.37505 4.79476 4.94743 4.99864 5.11252 5.20428 5.65456 5.80378 5.95736 6.39867 6.69840 6.71080 6.86572 7.36175 8.12389 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.026500 B = 0.008933 C = 0.007938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.331640 B = 3133.734626 C = 3526.442847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.046 3.954 3 N -0.293 5.293 4 N -0.489 5.489 5 H 0.445 0.555 6 C 0.230 3.770 7 N -1.026 6.026 8 S 2.715 3.285 9 O -1.024 7.024 10 O -1.029 7.029 11 C -1.031 5.031 12 H 0.114 0.886 13 C 0.075 3.925 14 N -0.887 5.887 15 Si 0.989 3.011 16 H -0.253 1.253 17 H -0.254 1.254 18 H -0.259 1.259 19 C 0.045 3.955 20 N -0.860 5.860 21 H 0.093 0.907 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.433 0.567 25 H 0.301 0.699 26 H 0.399 0.601 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.983 -3.546 -2.829 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 N -0.120 5.120 4 N -0.209 5.209 5 H 0.292 0.708 6 C 0.005 3.995 7 N -0.780 5.780 8 S 2.817 3.183 9 O -1.015 7.015 10 O -1.018 7.018 11 C -1.165 5.165 12 H 0.132 0.868 13 C -0.139 4.139 14 N -0.519 5.519 15 Si 0.808 3.192 16 H -0.176 1.176 17 H -0.178 1.178 18 H -0.183 1.183 19 C -0.069 4.069 20 N -0.411 5.411 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.271 0.729 25 H 0.112 0.888 26 H 0.227 0.773 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -12.852 -1.828 -3.183 13.366 hybrid contribution 0.580 -1.215 0.864 1.600 sum -12.272 -3.043 -2.319 12.855 Atomic orbital electron populations 1.20279 0.83220 1.04506 1.04258 1.22539 0.98706 0.88187 1.02905 1.77194 0.85607 1.22763 1.26473 1.46455 1.07821 1.03754 1.62916 0.70773 1.16970 0.87734 0.82993 1.11771 1.52675 1.27509 1.31171 1.66606 1.00341 0.70305 0.71977 0.75697 1.93353 1.60104 1.59312 1.88690 1.93271 1.83833 1.39157 1.85585 1.30709 1.07691 1.61543 1.16597 0.86811 1.25931 0.92653 0.87919 1.07360 1.69956 1.04416 1.37458 1.40022 0.85105 0.80105 0.79606 0.74421 1.17633 1.17840 1.18328 1.17114 0.88573 0.88525 1.12640 1.41391 1.09822 1.00108 1.89780 0.88843 0.88604 0.90264 0.72852 0.88829 0.77277 0.75864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.29 71.24 0.73 -0.44 15 2 C 0.05 1.37 7.21 43.10 0.31 1.68 15 3 N -0.29 -10.74 12.69 -47.26 -0.60 -11.34 15 4 N -0.49 -20.04 7.19 -54.56 -0.39 -20.44 15 5 H 0.44 19.33 7.11 -213.35 -1.52 17.81 15 6 C 0.23 8.93 7.61 131.04 1.00 9.92 15 7 N -1.03 -40.51 5.90 -54.55 -0.32 -40.84 15 8 S 2.72 141.10 4.99 -56.49 -0.28 140.82 15 9 O -1.02 -58.68 18.02 -128.00 -2.31 -60.99 15 10 O -1.03 -57.98 15.88 -128.00 -2.03 -60.01 15 11 C -1.03 -56.04 9.68 67.73 0.66 -55.39 15 12 H 0.11 5.81 7.81 -2.91 -0.02 5.79 15 13 C 0.08 4.11 5.46 84.65 0.46 4.58 15 14 N -0.89 -51.45 13.19 21.45 0.28 -51.17 15 15 Si 0.99 41.13 29.54 68.60 2.03 43.16 15 16 H -0.25 -10.06 7.11 99.48 0.71 -9.36 15 17 H -0.25 -9.86 7.11 99.48 0.71 -9.15 15 18 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 19 C 0.05 1.43 7.25 37.59 0.27 1.70 15 20 N -0.86 -19.17 9.23 -51.12 -0.47 -19.65 15 21 H 0.09 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.10 1.29 7.68 -2.39 -0.02 1.27 15 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 15 24 H 0.43 13.94 8.95 -96.74 -0.87 13.07 15 25 H 0.30 15.63 8.31 -92.71 -0.77 14.86 15 26 H 0.40 8.29 8.96 -92.71 -0.83 7.46 15 27 H 0.41 6.42 8.35 -92.71 -0.77 5.64 15 Total: -1.00 -74.43 258.92 -3.38 -77.81 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: -2.72 Total: 40.59 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 3.43 Total: -37.94 kcal Atomic # 7 Polarization: -141.92 SS G_CDS: -1.50 Total: -143.43 kcal Atomic # 8 Polarization: -116.66 SS G_CDS: -4.34 Total: -121.00 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Atomic # 16 Polarization: 141.10 SS G_CDS: -0.28 Total: 140.82 kcal Total: -74.43 -3.38 -77.81 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087419505.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.936 kcal (2) G-P(sol) polarization free energy of solvation -74.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds