Wall clock time and date at job start Mon Mar 30 2020 03:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86805 * 119.99907 * 2 1 4 4 H 1.48504 * 109.46972 * 270.00445 * 3 2 1 5 5 H 1.48504 * 109.46940 * 29.99825 * 3 2 1 6 6 H 1.48491 * 109.47049 * 150.00055 * 3 2 1 7 7 C 1.38945 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99873 * 359.97438 * 7 2 1 9 9 N 1.37100 * 120.00273 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99934 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00414 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00121 * 179.97438 * 10 9 7 13 13 S 1.81395 * 109.47384 * 180.02562 * 12 10 9 14 14 O 1.42097 * 109.46916 * 296.38510 * 13 12 10 15 15 C 1.81404 * 103.00154 * 180.02562 * 13 12 10 16 16 C 1.52994 * 109.47522 * 179.97438 * 15 13 12 17 17 C 1.53506 * 114.17458 * 174.99577 * 16 15 13 18 18 N 1.47481 * 87.93471 * 139.67146 * 17 16 15 19 19 C 1.47488 * 87.83530 * 332.99146 * 18 17 16 20 20 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99871 * 359.97438 * 9 7 2 22 22 H 1.09008 * 109.46884 * 59.99644 * 12 10 9 23 23 H 1.09002 * 109.46897 * 299.99940 * 12 10 9 24 24 H 1.09002 * 109.47056 * 59.99280 * 15 13 12 25 25 H 1.09008 * 109.46547 * 300.00201 * 15 13 12 26 26 H 1.09007 * 113.38456 * 41.91686 * 16 15 13 27 27 H 1.09007 * 113.47650 * 24.90928 * 17 16 15 28 28 H 1.08997 * 113.53552 * 254.44649 * 17 16 15 29 29 H 1.00901 * 110.99857 * 84.68111 * 18 17 16 30 30 H 1.08997 * 113.47731 * 141.77388 * 19 18 17 31 31 H 1.09001 * 113.47471 * 272.24480 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0021 11 8 3.4474 -3.4209 -0.0021 12 6 5.5608 -2.3704 -0.0033 13 16 6.1655 -4.0806 -0.0053 14 8 5.7629 -4.7267 1.1946 15 6 7.9679 -3.8762 -0.0057 16 6 8.6373 -5.2519 -0.0067 17 6 10.1668 -5.2067 -0.1293 18 7 10.2253 -6.2948 0.8646 19 6 8.9382 -5.8056 1.3931 20 1 -0.4850 0.8401 0.0004 21 1 3.8649 -0.3632 -0.0014 22 1 5.9248 -1.8569 0.8867 23 1 5.9234 -1.8562 -0.8933 24 1 8.2713 -3.3255 0.8847 25 1 8.2707 -3.3237 -0.8953 26 1 8.1570 -5.9663 -0.6754 27 1 10.6033 -4.2723 0.2237 28 1 10.5333 -5.4977 -1.1137 29 1 10.1157 -7.1950 0.4221 30 1 8.2625 -6.6044 1.6986 31 1 9.0468 -5.0310 2.1523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088090636.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:48 Heat of formation + Delta-G solvation = -65.735470 kcal Electronic energy + Delta-G solvation = -15458.602378 eV Core-core repulsion = 12673.849768 eV Total energy + Delta-G solvation = -2784.752610 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66053 -40.23931 -36.72796 -36.12286 -33.85340 -31.82851 -30.93960 -26.75205 -26.59545 -25.24404 -21.60808 -21.19163 -20.43043 -18.33540 -17.94475 -17.45199 -16.90505 -16.39926 -16.12657 -15.83586 -15.39842 -15.20495 -14.73246 -14.42654 -14.39615 -14.09417 -13.77132 -13.44512 -13.07317 -12.86362 -12.65049 -12.46558 -12.12153 -12.03090 -11.58366 -11.57386 -10.98180 -10.68720 -10.32364 -9.64753 -9.08234 -8.46237 -6.08658 0.53861 1.27529 1.32373 1.42156 1.82833 1.84984 2.19348 2.76260 3.08480 3.10075 3.18953 3.43392 3.72008 4.04269 4.29097 4.31837 4.37105 4.53493 4.61612 4.66908 4.76249 4.87988 4.94989 5.00173 5.29261 5.47373 5.88725 6.35365 6.48237 6.78891 7.29151 7.83408 8.71102 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.059383 B = 0.004573 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.403857 B = 6122.027588 C = 6429.035533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.966 3.034 4 H -0.247 1.247 5 H -0.275 1.275 6 H -0.237 1.237 7 C -0.337 4.337 8 H 0.057 0.943 9 N -0.581 5.581 10 C 0.463 3.537 11 O -0.622 6.622 12 C -0.467 4.467 13 S 1.316 4.684 14 O -0.905 6.905 15 C -0.443 4.443 16 C -0.137 4.137 17 C 0.032 3.968 18 N -0.669 5.669 19 C 0.002 3.998 20 H 0.281 0.719 21 H 0.392 0.608 22 H 0.115 0.885 23 H 0.190 0.810 24 H 0.081 0.919 25 H 0.168 0.832 26 H 0.120 0.880 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.346 0.654 30 H 0.058 0.942 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.860 -2.428 -6.615 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.212 4.212 3 Si 0.785 3.215 4 H -0.170 1.170 5 H -0.200 1.200 6 H -0.161 1.161 7 C -0.466 4.466 8 H 0.076 0.924 9 N -0.221 5.221 10 C 0.251 3.749 11 O -0.509 6.509 12 C -0.605 4.605 13 S 1.514 4.486 14 O -0.900 6.900 15 C -0.582 4.582 16 C -0.157 4.157 17 C -0.099 4.099 18 N -0.296 5.296 19 C -0.129 4.129 20 H 0.091 0.909 21 H 0.228 0.772 22 H 0.133 0.867 23 H 0.207 0.793 24 H 0.100 0.900 25 H 0.185 0.815 26 H 0.138 0.862 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.077 0.923 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 22.341 -3.667 -5.993 23.420 hybrid contribution -0.614 1.775 1.611 2.475 sum 21.728 -1.892 -4.382 22.246 Atomic orbital electron populations 1.69804 1.08172 1.29473 1.49494 1.26161 0.96508 1.02820 0.95692 0.85358 0.79160 0.76510 0.80437 1.17047 1.20045 1.16080 1.19085 0.81417 0.95216 1.50932 0.92447 1.42006 1.05914 1.07582 1.66645 1.20059 0.89492 0.83645 0.81702 1.90609 1.71504 1.32408 1.56361 1.27895 0.96564 1.24537 1.11474 1.70203 0.85267 0.83227 1.09888 1.93008 1.78905 1.65276 1.52851 1.27708 1.18548 1.02420 1.09491 1.23730 0.98141 0.96201 0.97664 1.23617 0.92455 0.96690 0.97165 1.65509 1.31814 1.05821 1.26443 1.23652 0.91607 1.00052 0.97557 0.90929 0.77168 0.86705 0.79271 0.90045 0.81476 0.86194 0.88417 0.88309 0.83820 0.92329 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.96 21.66 0.30 -55.49 16 2 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 3 Si 0.97 38.16 27.74 68.60 1.90 40.06 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.24 -8.02 6.52 99.48 0.65 -7.37 16 7 C -0.34 -19.85 10.16 84.04 0.85 -19.00 16 8 H 0.06 4.02 7.39 -2.91 -0.02 4.00 16 9 N -0.58 -27.45 5.09 -306.99 -1.56 -29.01 16 10 C 0.46 20.82 7.80 87.66 0.68 21.50 16 11 O -0.62 -34.56 15.28 -2.06 -0.03 -34.60 16 12 C -0.47 -12.70 6.41 71.24 0.46 -12.24 16 13 S 1.32 33.39 12.36 -56.49 -0.70 32.70 16 14 O -0.90 -37.77 17.93 -147.96 -2.65 -40.42 16 15 C -0.44 -6.41 5.83 71.98 0.42 -5.99 16 16 C -0.14 -2.06 3.95 -10.45 -0.04 -2.10 16 17 C 0.03 0.40 8.20 83.58 0.69 1.08 16 18 N -0.67 -11.71 8.76 -541.89 -4.75 -16.46 16 19 C 0.00 0.04 8.19 83.58 0.68 0.72 16 20 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 21 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 22 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 23 H 0.19 2.86 8.14 -2.39 -0.02 2.84 16 24 H 0.08 1.35 7.81 -2.39 -0.02 1.33 16 25 H 0.17 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.12 1.42 8.12 -2.38 -0.02 1.40 16 27 H 0.10 1.22 8.10 -2.38 -0.02 1.20 16 28 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.35 4.80 8.85 -89.69 -0.79 4.00 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.90 7.87 -2.39 -0.02 1.88 16 Total: -1.00 -90.07 280.82 -3.51 -93.58 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.23 Total: 25.90 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.21 Total: -16.25 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -6.01 Total: -100.96 kcal Atomic # 8 Polarization: -72.33 SS G_CDS: -2.69 Total: -75.02 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.06 kcal Atomic # 16 Polarization: 33.39 SS G_CDS: -0.70 Total: 32.70 kcal Total: -90.07 -3.51 -93.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088090636.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.842 kcal (2) G-P(sol) polarization free energy of solvation -90.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds