Wall clock time and date at job start Mon Mar 30 2020 04:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47148 * 313.12841 * 3 2 1 5 5 C 1.36916 * 120.00609 * 273.72522 * 4 3 2 6 6 H 1.08000 * 120.00447 * 190.27934 * 5 4 3 7 7 C 1.39015 * 119.99476 * 10.27608 * 5 4 3 8 8 N 1.31390 * 120.00094 * 16.00516 * 7 5 4 9 9 Si 1.86801 * 119.99951 * 196.00093 * 7 5 4 10 10 H 1.48505 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47027 * 120.00265 * 9 7 5 12 12 H 1.48495 * 109.47407 * 240.00202 * 9 7 5 13 13 C 1.34783 * 119.99625 * 93.73001 * 4 3 2 14 14 O 1.21636 * 119.99808 * 184.96279 * 13 4 3 15 15 C 1.47351 * 120.00060 * 4.95183 * 13 4 3 16 16 C 1.39592 * 120.63897 * 306.03174 * 15 13 4 17 17 N 1.31635 * 120.61131 * 180.02562 * 16 15 13 18 18 C 1.32178 * 122.12620 * 0.02562 * 17 16 15 19 19 C 1.37801 * 121.23573 * 359.97438 * 18 17 16 20 20 C 1.39479 * 119.21576 * 0.02562 * 19 18 17 21 21 N 1.38464 * 120.95641 * 179.72725 * 20 19 18 22 22 H 1.09006 * 109.47177 * 193.13493 * 3 2 1 23 23 H 1.08996 * 109.47384 * 73.13306 * 3 2 1 24 24 H 0.97005 * 119.99465 * 179.97438 * 8 7 5 25 25 H 1.07997 * 119.69590 * 359.97438 * 16 15 13 26 26 H 1.07995 * 119.38784 * 180.02562 * 18 17 16 27 27 H 1.07988 * 120.39241 * 180.02562 * 19 18 17 28 28 H 0.97004 * 119.99692 * 354.70846 * 21 20 19 29 29 H 0.96993 * 119.99809 * 174.70516 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9434 1.0080 5 6 3.2522 -0.5387 2.3067 6 1 3.7647 -1.1750 3.0130 7 6 2.7503 0.6914 2.7162 8 7 1.8693 1.3219 1.9728 9 14 3.3283 1.4478 4.3234 10 1 4.3158 0.5454 4.9683 11 1 3.9634 2.7623 4.0516 12 1 2.1658 1.6373 5.2277 13 6 3.3935 -2.2103 0.6569 14 8 3.7126 -3.0185 1.5082 15 6 3.3312 -2.6166 -0.7582 16 6 2.1724 -2.4078 -1.5079 17 7 2.1172 -2.7713 -2.7718 18 6 3.1395 -3.3433 -3.3840 19 6 4.3229 -3.5881 -2.7219 20 6 4.4403 -3.2244 -1.3804 21 7 5.6109 -3.4586 -0.6788 22 1 2.9709 1.0016 0.2335 23 1 2.9715 -0.2973 -0.9834 24 1 1.5189 2.1800 2.2587 25 1 1.3129 -1.9444 -1.0464 26 1 3.0459 -3.6235 -4.4228 27 1 5.1497 -4.0559 -3.2355 28 1 6.3363 -3.9494 -1.0958 29 1 5.7054 -3.1318 0.2295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088111522.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:01 Heat of formation + Delta-G solvation = 47.474938 kcal Electronic energy + Delta-G solvation = -17537.765842 eV Core-core repulsion = 14654.771203 eV Total energy + Delta-G solvation = -2882.994639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.19972 -38.24462 -36.02268 -34.95271 -34.26333 -32.14948 -30.74421 -29.54708 -27.49976 -25.35940 -23.43444 -22.55685 -19.73774 -18.07262 -17.33757 -17.24537 -16.73144 -16.23299 -15.05467 -14.62082 -14.34087 -14.09756 -14.03739 -13.60423 -13.22308 -12.93918 -12.73520 -12.02465 -11.61620 -11.53160 -11.33563 -11.23444 -11.21843 -10.56020 -10.45207 -10.39185 -9.42167 -9.36032 -8.82750 -8.55422 -8.22960 -7.74181 -6.58806 -4.08728 1.31390 1.82576 3.02633 3.16129 3.21876 3.50074 3.72645 3.96487 4.03667 4.10027 4.21823 4.66367 4.81649 4.93687 5.03467 5.31311 5.37432 5.52509 5.76377 6.00710 6.09163 6.12833 6.23575 6.59839 6.90041 7.35425 7.51391 7.72898 7.89378 8.17488 8.39648 8.82312 8.88198 9.08050 9.61519 10.43693 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.008474 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.857741 B = 3303.465416 C = 4031.392462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.254 3.746 3 C 0.220 3.780 4 N -0.430 5.430 5 C -0.308 4.308 6 H 0.113 0.887 7 C 0.030 3.970 8 N -0.880 5.880 9 Si 0.936 3.064 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.494 3.506 14 O -0.576 6.576 15 C -0.233 4.233 16 C 0.160 3.840 17 N -0.529 5.529 18 C 0.138 3.862 19 C -0.262 4.262 20 C 0.288 3.712 21 N -0.848 5.848 22 H 0.132 0.868 23 H 0.081 0.919 24 H 0.276 0.724 25 H 0.152 0.848 26 H 0.151 0.849 27 H 0.130 0.870 28 H 0.398 0.602 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -3.210 -7.949 11.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.063 4.063 3 C 0.092 3.908 4 N -0.148 5.148 5 C -0.435 4.435 6 H 0.131 0.869 7 C -0.173 4.173 8 N -0.519 5.519 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.283 3.717 14 O -0.460 6.460 15 C -0.244 4.244 16 C 0.002 3.998 17 N -0.241 5.241 18 C -0.018 4.018 19 C -0.288 4.288 20 C 0.170 3.830 21 N -0.386 5.386 22 H 0.149 0.851 23 H 0.098 0.902 24 H 0.087 0.913 25 H 0.170 0.830 26 H 0.168 0.832 27 H 0.148 0.852 28 H 0.226 0.774 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.875 -3.242 -7.927 10.385 hybrid contribution 1.589 0.351 1.466 2.190 sum 7.464 -2.891 -6.461 10.287 Atomic orbital electron populations 1.80913 1.13365 1.09929 1.11268 1.28941 0.95120 0.91626 0.90630 1.18918 0.82068 0.98264 0.91534 1.43631 1.55098 1.07514 1.08583 1.19887 1.35051 1.02359 0.86177 0.86889 1.25345 0.94857 0.97061 1.00036 1.69694 1.26165 1.16937 1.39144 0.85695 0.78728 0.78820 0.80523 1.19065 1.20336 1.20715 1.17562 0.85213 0.82209 0.86701 1.90644 1.53836 1.50300 1.51208 1.20667 0.95941 1.10823 0.97014 1.22937 0.95637 0.92236 0.88997 1.67688 1.30581 1.15293 1.10574 1.22454 0.87908 0.92043 0.99351 1.21449 1.01502 1.12243 0.93639 1.17867 0.85897 0.88774 0.90427 1.42374 1.15058 1.62349 1.18810 0.85091 0.90165 0.91251 0.83045 0.83166 0.85181 0.77406 0.75606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.59 18.53 42.15 0.78 -10.80 15 2 C 0.25 5.83 10.65 -20.76 -0.22 5.60 15 3 C 0.22 4.56 4.77 -6.83 -0.03 4.53 15 4 N -0.43 -10.00 2.59 -119.18 -0.31 -10.31 15 5 C -0.31 -7.72 9.44 -14.99 -0.14 -7.86 15 6 H 0.11 2.96 7.29 -52.49 -0.38 2.57 15 7 C 0.03 0.73 5.12 -17.45 -0.09 0.64 15 8 N -0.88 -21.62 8.50 55.50 0.47 -21.15 15 9 Si 0.94 19.25 29.58 -169.99 -5.03 14.22 15 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 15 12 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 13 C 0.49 11.24 6.47 -12.55 -0.08 11.16 15 14 O -0.58 -14.62 15.69 5.25 0.08 -14.54 15 15 C -0.23 -4.49 4.75 -104.66 -0.50 -4.99 15 16 C 0.16 3.04 8.88 -17.13 -0.15 2.89 15 17 N -0.53 -9.18 10.34 -12.99 -0.13 -9.31 15 18 C 0.14 1.91 11.15 -17.56 -0.20 1.71 15 19 C -0.26 -3.45 9.98 -39.28 -0.39 -3.84 15 20 C 0.29 4.58 6.81 -83.38 -0.57 4.01 15 21 N -0.85 -11.52 8.92 32.69 0.29 -11.23 15 22 H 0.13 2.74 6.40 -51.93 -0.33 2.41 15 23 H 0.08 1.44 5.79 -51.93 -0.30 1.14 15 24 H 0.28 6.57 8.31 -40.82 -0.34 6.23 15 25 H 0.15 3.13 5.27 -52.49 -0.28 2.85 15 26 H 0.15 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.13 1.26 8.06 -52.49 -0.42 0.83 15 28 H 0.40 3.87 8.86 -40.82 -0.36 3.51 15 29 H 0.41 6.38 7.14 -40.82 -0.29 6.09 15 LS Contribution 258.66 15.07 3.90 3.90 Total: -1.00 -30.17 258.66 -4.24 -34.41 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -1.93 Total: 10.97 kcal Atomic # 6 Polarization: 16.22 SS G_CDS: -2.37 Total: 13.85 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 1.10 Total: -62.81 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.17 -4.24 -34.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088111522.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.883 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds