Wall clock time and date at job start Mon Mar 30 2020 04:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47148 * 313.12841 * 3 2 1 5 5 C 1.36916 * 120.00609 * 273.72522 * 4 3 2 6 6 H 1.08000 * 120.00447 * 190.27934 * 5 4 3 7 7 C 1.39015 * 119.99476 * 10.27608 * 5 4 3 8 8 N 1.31390 * 120.00094 * 16.00516 * 7 5 4 9 9 Si 1.86801 * 119.99951 * 196.00093 * 7 5 4 10 10 H 1.48505 * 109.47023 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47027 * 120.00265 * 9 7 5 12 12 H 1.48495 * 109.47407 * 240.00202 * 9 7 5 13 13 C 1.34783 * 119.99625 * 93.73001 * 4 3 2 14 14 O 1.21636 * 119.99808 * 184.96279 * 13 4 3 15 15 C 1.47351 * 120.00060 * 4.95183 * 13 4 3 16 16 C 1.39592 * 120.63897 * 306.03174 * 15 13 4 17 17 N 1.31635 * 120.61131 * 180.02562 * 16 15 13 18 18 C 1.32178 * 122.12620 * 0.02562 * 17 16 15 19 19 C 1.37801 * 121.23573 * 359.97438 * 18 17 16 20 20 C 1.39479 * 119.21576 * 0.02562 * 19 18 17 21 21 N 1.38464 * 120.95641 * 179.72725 * 20 19 18 22 22 H 1.09006 * 109.47177 * 193.13493 * 3 2 1 23 23 H 1.08996 * 109.47384 * 73.13306 * 3 2 1 24 24 H 0.97005 * 119.99465 * 179.97438 * 8 7 5 25 25 H 1.07997 * 119.69590 * 359.97438 * 16 15 13 26 26 H 1.07995 * 119.38784 * 180.02562 * 18 17 16 27 27 H 1.07988 * 120.39241 * 180.02562 * 19 18 17 28 28 H 0.97004 * 119.99692 * 354.70846 * 21 20 19 29 29 H 0.96993 * 119.99809 * 174.70516 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9434 1.0080 5 6 3.2522 -0.5387 2.3067 6 1 3.7647 -1.1750 3.0130 7 6 2.7503 0.6914 2.7162 8 7 1.8693 1.3219 1.9728 9 14 3.3283 1.4478 4.3234 10 1 4.3158 0.5454 4.9683 11 1 3.9634 2.7623 4.0516 12 1 2.1658 1.6373 5.2277 13 6 3.3935 -2.2103 0.6569 14 8 3.7126 -3.0185 1.5082 15 6 3.3312 -2.6166 -0.7582 16 6 2.1724 -2.4078 -1.5079 17 7 2.1172 -2.7713 -2.7718 18 6 3.1395 -3.3433 -3.3840 19 6 4.3229 -3.5881 -2.7219 20 6 4.4403 -3.2244 -1.3804 21 7 5.6109 -3.4586 -0.6788 22 1 2.9709 1.0016 0.2335 23 1 2.9715 -0.2973 -0.9834 24 1 1.5189 2.1800 2.2587 25 1 1.3129 -1.9444 -1.0464 26 1 3.0459 -3.6235 -4.4228 27 1 5.1497 -4.0559 -3.2355 28 1 6.3363 -3.9494 -1.0958 29 1 5.7054 -3.1318 0.2295 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088111522.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:01 Heat of formation + Delta-G solvation = 25.467999 kcal Electronic energy + Delta-G solvation = -17538.720135 eV Core-core repulsion = 14654.771203 eV Total energy + Delta-G solvation = -2883.948931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.62364 -39.82786 -37.77785 -36.33350 -36.02820 -33.93232 -32.12938 -30.77032 -29.25582 -27.07423 -24.85998 -23.83767 -21.33839 -19.90896 -18.67369 -18.48975 -18.23019 -17.98412 -16.75729 -16.07785 -15.78943 -15.55607 -15.44873 -14.92305 -14.72399 -14.61129 -14.36864 -13.82197 -13.39476 -13.14738 -12.95950 -12.78023 -12.55237 -12.33094 -12.23619 -12.07398 -11.20433 -10.89613 -10.22873 -10.08636 -9.97570 -8.94219 -8.43602 -6.01107 0.03708 0.58601 1.37331 1.46432 1.59498 1.79607 1.98336 2.25995 2.33551 2.84252 2.92334 2.96653 3.08974 3.58541 3.60897 3.83986 3.97489 4.28993 4.44224 4.56112 4.81722 4.89357 4.93311 5.02297 5.42523 5.71562 5.91762 6.29555 6.35692 6.85547 6.99792 7.03194 7.16120 7.26354 7.81475 8.57060 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.028834 B = 0.008474 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.857741 B = 3303.465416 C = 4031.392462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.266 3.734 3 C 0.228 3.772 4 N -0.442 5.442 5 C -0.336 4.336 6 H 0.093 0.907 7 C 0.001 3.999 8 N -0.896 5.896 9 Si 0.997 3.003 10 H -0.268 1.268 11 H -0.263 1.263 12 H -0.288 1.288 13 C 0.497 3.503 14 O -0.611 6.611 15 C -0.262 4.262 16 C 0.153 3.847 17 N -0.548 5.548 18 C 0.142 3.858 19 C -0.242 4.242 20 C 0.285 3.715 21 N -0.837 5.837 22 H 0.130 0.870 23 H 0.110 0.890 24 H 0.277 0.723 25 H 0.126 0.874 26 H 0.195 0.805 27 H 0.177 0.823 28 H 0.418 0.582 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.900 -3.694 -9.753 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.050 4.050 3 C 0.101 3.899 4 N -0.159 5.159 5 C -0.463 4.463 6 H 0.111 0.889 7 C -0.200 4.200 8 N -0.536 5.536 9 Si 0.821 3.179 10 H -0.192 1.192 11 H -0.187 1.187 12 H -0.215 1.215 13 C 0.287 3.713 14 O -0.498 6.498 15 C -0.273 4.273 16 C -0.005 4.005 17 N -0.261 5.261 18 C -0.012 4.012 19 C -0.267 4.267 20 C 0.166 3.834 21 N -0.375 5.375 22 H 0.148 0.852 23 H 0.128 0.872 24 H 0.088 0.912 25 H 0.144 0.856 26 H 0.212 0.788 27 H 0.194 0.806 28 H 0.250 0.750 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 7.549 -3.736 -9.775 12.903 hybrid contribution 1.123 0.382 1.928 2.263 sum 8.672 -3.354 -7.847 12.167 Atomic orbital electron populations 1.80889 1.14397 1.11148 1.12459 1.29359 0.95566 0.90539 0.89583 1.19017 0.80699 0.97798 0.92389 1.43756 1.55415 1.08259 1.08509 1.19844 1.36299 1.02998 0.87132 0.88885 1.26020 0.94424 0.96815 1.02737 1.69776 1.26457 1.17042 1.40298 0.84800 0.77840 0.78406 0.76840 1.19184 1.18747 1.21467 1.18150 0.83474 0.81575 0.88119 1.90599 1.55135 1.51202 1.52852 1.20388 0.97881 1.13910 0.95139 1.22545 0.94832 0.93233 0.89902 1.67706 1.32406 1.16370 1.09622 1.23221 0.87036 0.89971 1.00995 1.21885 1.02505 1.10339 0.92002 1.18088 0.85506 0.88171 0.91660 1.42365 1.15042 1.61805 1.18269 0.85218 0.87217 0.91179 0.85625 0.78795 0.80556 0.75020 0.76698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.37 18.53 20.01 0.37 -25.00 15 2 C 0.27 12.44 10.65 89.44 0.95 13.40 15 3 C 0.23 9.56 4.77 84.57 0.40 9.97 15 4 N -0.44 -21.01 2.59 -649.22 -1.68 -22.69 15 5 C -0.34 -17.30 9.44 84.09 0.79 -16.50 15 6 H 0.09 5.07 7.29 -2.91 -0.02 5.05 15 7 C 0.00 0.06 5.12 84.95 0.43 0.50 15 8 N -0.90 -44.43 8.50 21.68 0.18 -44.24 15 9 Si 1.00 39.68 29.58 68.60 2.03 41.71 15 10 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 11 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 12 H -0.29 -11.77 7.11 99.48 0.71 -11.06 15 13 C 0.50 23.02 6.47 86.64 0.56 23.58 15 14 O -0.61 -31.95 15.69 -4.14 -0.07 -32.01 15 15 C -0.26 -9.92 4.75 -19.89 -0.09 -10.02 15 16 C 0.15 5.78 8.88 85.05 0.76 6.54 15 17 N -0.55 -17.93 10.34 -195.01 -2.02 -19.94 15 18 C 0.14 3.33 11.15 84.54 0.94 4.27 15 19 C -0.24 -5.24 9.98 22.47 0.22 -5.02 15 20 C 0.28 8.36 6.81 39.06 0.27 8.63 15 21 N -0.84 -20.89 8.92 -50.48 -0.45 -21.34 15 22 H 0.13 5.48 6.40 -2.38 -0.02 5.46 15 23 H 0.11 3.92 5.79 -2.39 -0.01 3.91 15 24 H 0.28 13.22 8.31 -92.70 -0.77 12.45 15 25 H 0.13 5.34 5.27 -2.91 -0.02 5.32 15 26 H 0.20 2.81 8.06 -2.91 -0.02 2.79 15 27 H 0.18 2.21 8.06 -2.92 -0.02 2.19 15 28 H 0.42 6.73 8.86 -92.71 -0.82 5.90 15 29 H 0.40 12.14 7.14 -92.71 -0.66 11.48 15 Total: -1.00 -67.01 258.66 3.37 -63.64 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: -0.25 Total: 24.52 kcal Atomic # 6 Polarization: 30.11 SS G_CDS: 5.24 Total: 35.35 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -3.59 Total: -133.21 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.07 Total: -32.01 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -67.01 3.37 -63.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088111522.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.111 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds