Wall clock time and date at job start Mon Mar 30 2020 04:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34984 * 117.00133 * 2 1 4 4 O 1.21650 * 119.99742 * 0.02562 * 3 2 1 5 5 C 1.46425 * 120.00232 * 179.97438 * 3 2 1 6 6 N 1.37067 * 125.65433 * 355.41985 * 5 3 2 7 7 H 0.97000 * 124.65301 * 359.42077 * 6 5 3 8 8 C 1.37571 * 110.69767 * 180.10017 * 6 5 3 9 9 N 1.32861 * 132.16644 * 179.32579 * 8 6 5 10 10 C 1.31595 * 121.78026 * 179.97438 * 9 8 6 11 11 C 1.38565 * 121.54956 * 0.02562 * 10 9 8 12 12 C 1.38401 * 119.28286 * 359.97438 * 11 10 9 13 13 C 1.39398 * 118.10075 * 0.25334 * 12 11 10 14 14 C 1.40789 * 125.65527 * 174.84752 * 5 3 2 15 15 C 1.39909 * 127.06988 * 359.97438 * 14 5 3 16 16 H 1.07993 * 120.00810 * 31.04051 * 15 14 5 17 17 C 1.40594 * 119.99588 * 211.03583 * 15 14 5 18 18 N 1.30488 * 119.99924 * 18.31654 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 198.31674 * 17 15 14 20 20 H 1.48498 * 109.47199 * 59.99790 * 19 17 15 21 21 H 1.48498 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46926 * 300.00028 * 19 17 15 23 23 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47478 * 299.99658 * 1 2 3 25 25 H 1.08998 * 109.47205 * 60.00631 * 1 2 3 26 26 H 1.07999 * 119.22242 * 180.02562 * 10 9 8 27 27 H 1.07995 * 120.35708 * 179.97438 * 11 10 9 28 28 H 1.08008 * 120.94633 * 179.97438 * 12 11 10 29 29 H 0.97002 * 119.99737 * 184.80222 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2027 0.0000 4 8 1.3792 2.2229 0.0005 5 6 3.5041 1.2794 0.0006 6 7 4.3600 0.2126 0.0901 7 1 4.0812 -0.7130 0.1711 8 6 5.6688 0.6357 0.0644 9 7 6.8206 -0.0227 0.1350 10 6 7.9789 0.6001 0.0893 11 6 8.0567 1.9781 -0.0345 12 6 6.8896 2.7177 -0.1126 13 6 5.6751 2.0358 -0.0572 14 6 4.2640 2.4601 -0.1021 15 6 3.7795 3.7670 -0.2230 16 1 2.8381 4.0383 0.2314 17 6 4.5183 4.7273 -0.9362 18 7 5.4454 4.3482 -1.7725 19 14 4.1726 6.5460 -0.6866 20 1 4.4007 6.9024 0.7368 21 1 5.0797 7.3452 -1.5490 22 1 2.7622 6.8362 -1.0496 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 8.8902 0.0238 0.1497 27 1 9.0178 2.4694 -0.0697 28 1 6.9190 3.7931 -0.2091 29 1 6.0020 5.0099 -2.2122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095937123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:47 Heat of formation + Delta-G solvation = -28.160203 kcal Electronic energy + Delta-G solvation = -17344.660569 eV Core-core repulsion = 14426.093393 eV Total energy + Delta-G solvation = -2918.567176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.18022 -39.02533 -36.47270 -35.28941 -34.27375 -31.47527 -29.45641 -28.87574 -27.20416 -25.34713 -23.46018 -21.58599 -20.79771 -19.34361 -17.57636 -16.76343 -16.54732 -15.75354 -15.50380 -15.15470 -14.74171 -14.29010 -13.80019 -13.26949 -12.90485 -12.44075 -12.41369 -12.20009 -11.69383 -11.55328 -11.39599 -11.17480 -10.97379 -10.64409 -10.43849 -9.95738 -9.52259 -9.27654 -9.12015 -8.42018 -7.40679 -7.33385 -6.89409 -4.53532 1.80675 2.38877 2.84607 2.96044 3.00164 3.21866 3.70000 3.76887 4.03974 4.15166 4.81142 5.12434 5.46846 5.59705 5.67649 5.78280 5.85220 6.05703 6.12727 6.21404 6.50010 6.71653 6.80382 6.82851 7.17658 7.35674 7.44032 7.64431 7.94608 8.26790 8.34508 8.55179 8.60436 9.02119 9.16376 9.81527 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.012249 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.427124 B = 2285.285733 C = 4050.305287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.377 6.377 3 C 0.518 3.482 4 O -0.533 6.533 5 C -0.179 4.179 6 N -0.572 5.572 7 H 0.404 0.596 8 C 0.324 3.676 9 N -0.541 5.541 10 C 0.141 3.859 11 C -0.265 4.265 12 C 0.031 3.969 13 C -0.165 4.165 14 C 0.156 3.844 15 C -0.395 4.395 16 H 0.106 0.894 17 C 0.075 3.925 18 N -0.762 5.762 19 Si 0.915 3.085 20 H -0.258 1.258 21 H -0.275 1.275 22 H -0.258 1.258 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.143 0.857 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.028 -1.663 1.654 2.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.296 6.296 3 C 0.373 3.627 4 O -0.427 6.427 5 C -0.279 4.279 6 N -0.183 5.183 7 H 0.239 0.761 8 C 0.087 3.913 9 N -0.258 5.258 10 C -0.023 4.023 11 C -0.289 4.289 12 C 0.006 3.994 13 C -0.174 4.174 14 C 0.148 3.852 15 C -0.423 4.423 16 H 0.124 0.876 17 C -0.148 4.148 18 N -0.386 5.386 19 Si 0.738 3.262 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.182 1.182 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.160 0.840 27 H 0.136 0.864 28 H 0.145 0.855 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.641 -2.265 1.503 2.793 hybrid contribution -0.308 1.160 -0.124 1.207 sum 0.333 -1.105 1.379 1.798 Atomic orbital electron populations 1.22574 0.78989 1.01888 1.01602 1.86146 1.21647 1.35118 1.86714 1.19574 0.86907 0.80534 0.75703 1.90763 1.65331 1.35311 1.51267 1.18336 0.84814 0.86494 1.38225 1.40546 1.01481 1.07981 1.68320 0.76119 1.18440 0.85306 0.90148 0.97416 1.66493 0.96510 1.41023 1.21788 1.22076 0.93487 0.91959 0.94795 1.21568 0.98349 0.95307 1.13628 1.20991 0.89985 0.99845 0.88611 1.19819 0.94697 0.92808 1.10067 1.17915 0.87506 0.90833 0.88971 1.19391 1.06068 0.92188 1.24657 0.87610 1.26218 0.93573 1.02623 0.92370 1.69717 1.14631 1.38324 1.15899 0.86219 0.80118 0.79970 0.79901 1.18248 1.19945 1.18222 0.89551 0.93128 0.93037 0.83998 0.86366 0.85520 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.45 101.05 1.06 1.76 15 2 O -0.38 -7.74 10.48 -41.28 -0.43 -8.17 15 3 C 0.52 12.58 7.91 34.03 0.27 12.85 15 4 O -0.53 -13.93 14.88 -19.38 -0.29 -14.22 15 5 C -0.18 -4.51 7.12 -81.27 -0.58 -5.09 15 6 N -0.57 -13.18 6.01 -8.13 -0.05 -13.22 15 7 H 0.40 8.18 8.96 -40.82 -0.37 7.81 15 8 C 0.32 7.70 8.36 -155.47 -1.30 6.40 15 9 N -0.54 -11.77 10.39 -12.28 -0.13 -11.90 15 10 C 0.14 2.65 11.15 -17.53 -0.20 2.45 15 11 C -0.26 -4.98 10.11 -39.40 -0.40 -5.38 15 12 C 0.03 0.69 8.82 -39.09 -0.34 0.35 15 13 C -0.17 -4.09 5.77 -104.86 -0.61 -4.70 15 14 C 0.16 4.11 5.75 -104.57 -0.60 3.50 15 15 C -0.40 -10.27 8.54 -38.07 -0.32 -10.59 15 16 H 0.11 2.82 6.79 -52.49 -0.36 2.46 15 17 C 0.08 1.77 4.95 -17.23 -0.09 1.68 15 18 N -0.76 -17.98 10.19 55.58 0.57 -17.41 15 19 Si 0.92 17.56 29.60 -169.99 -5.03 12.53 15 20 H -0.26 -4.88 7.11 56.52 0.40 -4.48 15 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 23 H 0.09 1.04 8.14 -51.93 -0.42 0.62 15 24 H 0.05 0.79 8.13 -51.93 -0.42 0.36 15 25 H 0.05 0.82 8.13 -51.93 -0.42 0.40 15 26 H 0.14 2.06 8.06 -52.49 -0.42 1.64 15 27 H 0.12 1.81 8.06 -52.49 -0.42 1.39 15 28 H 0.13 2.74 6.35 -52.48 -0.33 2.40 15 29 H 0.29 6.12 8.30 -40.82 -0.34 5.78 15 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -29.26 262.71 -6.82 -36.08 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -2.30 Total: 9.12 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -3.11 Total: 3.24 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 0.39 Total: -42.53 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.72 Total: -22.39 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.26 -6.82 -36.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095937123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.915 kcal (2) G-P(sol) polarization free energy of solvation -29.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds