Wall clock time and date at job start Mon Mar 30 2020 04:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.34984 * 117.00133 * 2 1 4 4 O 1.21650 * 119.99742 * 0.02562 * 3 2 1 5 5 C 1.46425 * 120.00232 * 179.97438 * 3 2 1 6 6 N 1.37067 * 125.65433 * 355.41985 * 5 3 2 7 7 H 0.97000 * 124.65301 * 359.42077 * 6 5 3 8 8 C 1.37571 * 110.69767 * 180.10017 * 6 5 3 9 9 N 1.32861 * 132.16644 * 179.32579 * 8 6 5 10 10 C 1.31595 * 121.78026 * 179.97438 * 9 8 6 11 11 C 1.38565 * 121.54956 * 0.02562 * 10 9 8 12 12 C 1.38401 * 119.28286 * 359.97438 * 11 10 9 13 13 C 1.39398 * 118.10075 * 0.25334 * 12 11 10 14 14 C 1.40789 * 125.65527 * 174.84752 * 5 3 2 15 15 C 1.39909 * 127.06988 * 359.97438 * 14 5 3 16 16 H 1.07993 * 120.00810 * 31.04051 * 15 14 5 17 17 C 1.40594 * 119.99588 * 211.03583 * 15 14 5 18 18 N 1.30488 * 119.99924 * 18.31654 * 17 15 14 19 19 Si 1.86800 * 119.99940 * 198.31674 * 17 15 14 20 20 H 1.48498 * 109.47199 * 59.99790 * 19 17 15 21 21 H 1.48498 * 109.47017 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46926 * 300.00028 * 19 17 15 23 23 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47478 * 299.99658 * 1 2 3 25 25 H 1.08998 * 109.47205 * 60.00631 * 1 2 3 26 26 H 1.07999 * 119.22242 * 180.02562 * 10 9 8 27 27 H 1.07995 * 120.35708 * 179.97438 * 11 10 9 28 28 H 1.08008 * 120.94633 * 179.97438 * 12 11 10 29 29 H 0.97002 * 119.99737 * 184.80222 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2027 0.0000 4 8 1.3792 2.2229 0.0005 5 6 3.5041 1.2794 0.0006 6 7 4.3600 0.2126 0.0901 7 1 4.0812 -0.7130 0.1711 8 6 5.6688 0.6357 0.0644 9 7 6.8206 -0.0227 0.1350 10 6 7.9789 0.6001 0.0893 11 6 8.0567 1.9781 -0.0345 12 6 6.8896 2.7177 -0.1126 13 6 5.6751 2.0358 -0.0572 14 6 4.2640 2.4601 -0.1021 15 6 3.7795 3.7670 -0.2230 16 1 2.8381 4.0383 0.2314 17 6 4.5183 4.7273 -0.9362 18 7 5.4454 4.3482 -1.7725 19 14 4.1726 6.5460 -0.6866 20 1 4.4007 6.9024 0.7368 21 1 5.0797 7.3452 -1.5490 22 1 2.7622 6.8362 -1.0496 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 8.8902 0.0238 0.1497 27 1 9.0178 2.4694 -0.0697 28 1 6.9190 3.7931 -0.2091 29 1 6.0020 5.0099 -2.2122 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095937123.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:46 Heat of formation + Delta-G solvation = -46.142787 kcal Electronic energy + Delta-G solvation = -17345.440352 eV Core-core repulsion = 14426.093393 eV Total energy + Delta-G solvation = -2919.346959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.91113 -40.76371 -38.14169 -37.09406 -36.06239 -33.17519 -31.22452 -30.56320 -28.69745 -27.12607 -25.12960 -23.26071 -22.52729 -21.12984 -19.33755 -18.49343 -18.37007 -17.41128 -17.16843 -16.80962 -16.35729 -15.89842 -15.50794 -14.86900 -14.53861 -14.09183 -14.07571 -13.89366 -13.41476 -13.22314 -12.84257 -12.76291 -12.64039 -12.36314 -12.00981 -11.57892 -11.31299 -11.08600 -10.84950 -10.08568 -9.12567 -9.09208 -8.68263 -6.41912 0.06928 0.74285 1.19785 1.38694 1.49528 1.56774 2.04030 2.17950 2.31388 2.39725 3.04089 3.35786 3.93635 4.22831 4.33810 4.37017 4.42974 4.47937 4.61516 4.65419 4.83408 5.02390 5.08207 5.16189 5.50345 5.61072 5.78084 5.92888 6.13991 6.43863 6.49135 6.74913 6.85298 7.24516 7.43945 8.09463 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014918 B = 0.012249 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.427124 B = 2285.285733 C = 4050.305287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.375 6.375 3 C 0.516 3.484 4 O -0.563 6.563 5 C -0.203 4.203 6 N -0.569 5.569 7 H 0.412 0.588 8 C 0.307 3.693 9 N -0.551 5.551 10 C 0.148 3.852 11 C -0.249 4.249 12 C 0.017 3.983 13 C -0.201 4.201 14 C 0.125 3.875 15 C -0.429 4.429 16 H 0.085 0.915 17 C 0.046 3.954 18 N -0.780 5.780 19 Si 0.983 3.017 20 H -0.254 1.254 21 H -0.251 1.251 22 H -0.268 1.268 23 H 0.133 0.867 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.195 0.805 27 H 0.162 0.838 28 H 0.125 0.875 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.893 -1.690 1.557 3.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.293 6.293 3 C 0.372 3.628 4 O -0.459 6.459 5 C -0.303 4.303 6 N -0.182 5.182 7 H 0.249 0.751 8 C 0.071 3.929 9 N -0.268 5.268 10 C -0.016 4.016 11 C -0.272 4.272 12 C -0.009 4.009 13 C -0.210 4.210 14 C 0.118 3.882 15 C -0.457 4.457 16 H 0.103 0.897 17 C -0.176 4.176 18 N -0.404 5.404 19 Si 0.802 3.198 20 H -0.178 1.178 21 H -0.175 1.175 22 H -0.192 1.192 23 H 0.151 0.849 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.211 0.789 27 H 0.180 0.820 28 H 0.143 0.857 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.516 -2.342 1.402 3.712 hybrid contribution -0.802 1.059 -0.111 1.332 sum 1.715 -1.283 1.291 2.501 Atomic orbital electron populations 1.22995 0.76338 1.04957 1.01601 1.86116 1.24207 1.32925 1.86094 1.19590 0.86879 0.81121 0.75210 1.90725 1.65955 1.36493 1.52724 1.18610 0.85695 0.87205 1.38801 1.40408 1.01277 1.07938 1.68563 0.75076 1.18675 0.86011 0.90162 0.98015 1.66645 0.96631 1.41261 1.22280 1.23014 0.94056 0.92639 0.91906 1.22040 0.98923 0.95415 1.10815 1.21188 0.90376 1.00143 0.89147 1.20033 0.94848 0.93738 1.12335 1.18369 0.89113 0.91412 0.89354 1.19450 1.06264 0.93432 1.26529 0.89741 1.26911 0.93063 1.06216 0.91421 1.69703 1.14842 1.40169 1.15641 0.85243 0.79633 0.74676 0.80277 1.17793 1.17481 1.19242 0.84870 0.92970 0.93284 0.78871 0.82014 0.85736 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.09 10.45 113.37 1.18 2.27 15 2 O -0.38 -15.54 10.48 -59.02 -0.62 -16.16 15 3 C 0.52 26.04 7.91 69.95 0.55 26.60 15 4 O -0.56 -30.79 14.88 19.34 0.29 -30.51 15 5 C -0.20 -10.68 7.12 41.08 0.29 -10.38 15 6 N -0.57 -26.86 6.01 -179.64 -1.08 -27.94 15 7 H 0.41 17.05 8.96 -92.71 -0.83 16.22 15 8 C 0.31 14.66 8.36 133.75 1.12 15.78 15 9 N -0.55 -22.99 10.39 -192.77 -2.00 -24.99 15 10 C 0.15 5.00 11.15 84.81 0.95 5.94 15 11 C -0.25 -8.52 10.11 22.39 0.23 -8.29 15 12 C 0.02 0.75 8.82 22.59 0.20 0.95 15 13 C -0.20 -10.11 5.77 -20.02 -0.12 -10.22 15 14 C 0.13 6.91 5.75 -19.83 -0.11 6.79 15 15 C -0.43 -23.34 8.54 23.25 0.20 -23.14 15 16 H 0.08 4.80 6.79 -2.91 -0.02 4.78 15 17 C 0.05 2.17 4.95 85.47 0.42 2.59 15 18 N -0.78 -36.88 10.19 21.94 0.22 -36.66 15 19 Si 0.98 36.09 29.60 68.60 2.03 38.13 15 20 H -0.25 -9.08 7.11 99.48 0.71 -8.37 15 21 H -0.25 -8.22 7.11 99.48 0.71 -7.51 15 22 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 23 H 0.13 2.88 8.14 -2.38 -0.02 2.86 15 24 H 0.05 1.61 8.13 -2.39 -0.02 1.59 15 25 H 0.05 1.55 8.13 -2.39 -0.02 1.53 15 26 H 0.19 4.48 8.06 -2.91 -0.02 4.45 15 27 H 0.16 4.09 8.06 -2.91 -0.02 4.07 15 28 H 0.12 5.32 6.35 -2.91 -0.02 5.30 15 29 H 0.30 12.52 8.30 -92.71 -0.77 11.75 15 Total: -1.00 -66.17 262.71 4.13 -62.04 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.38 Total: 27.20 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 4.91 Total: 8.89 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -2.86 Total: -89.59 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.33 Total: -46.67 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.13 kcal Total: -66.17 4.13 -62.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095937123.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.898 kcal (2) G-P(sol) polarization free energy of solvation -66.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds