Wall clock time and date at job start Mon Mar 30 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46977 * 299.99676 * 3 2 1 6 6 H 1.48501 * 109.47487 * 59.99605 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 197.86327 * 7 2 1 9 9 C 1.41397 * 120.00058 * 17.87057 * 7 2 1 10 10 C 1.40730 * 120.24580 * 24.37725 * 9 7 2 11 11 C 1.37591 * 119.74738 * 179.97438 * 10 9 7 12 12 C 1.38667 * 120.24689 * 0.27182 * 11 10 9 13 13 C 1.38610 * 120.49841 * 359.45068 * 12 11 10 14 14 S 1.76205 * 119.87472 * 180.30143 * 13 12 11 15 15 O 1.42098 * 106.40000 * 23.78848 * 14 13 12 16 16 O 1.42105 * 106.39936 * 156.70779 * 14 13 12 17 17 Cl 2.01994 * 107.21631 * 270.24780 * 14 13 12 18 18 C 1.37644 * 120.24825 * 0.54947 * 13 12 11 19 19 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.12359 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.88212 * 179.97438 * 11 10 9 22 22 H 1.07999 * 119.74866 * 179.72447 * 12 11 10 23 23 H 1.08005 * 120.12522 * 179.74899 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2106 11 6 -0.4090 -3.5319 -1.5697 12 6 0.0635 -4.7506 -1.1067 13 6 1.1802 -4.8068 -0.2876 14 16 1.7713 -6.3649 0.2848 15 8 1.3102 -7.3352 -0.6453 16 8 3.1447 -6.1817 0.6004 17 17 0.8322 -6.7561 2.0299 18 6 1.8262 -3.6497 0.0844 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1514 -1.4141 -1.5687 21 1 -1.2776 -3.5002 -2.2108 22 1 -0.4398 -5.6631 -1.3901 23 1 2.6938 -3.6955 0.7261 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100560326.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:15 Heat of formation + Delta-G solvation = -67.968956 kcal Electronic energy + Delta-G solvation = -13319.369857 eV Core-core repulsion = 10671.270620 eV Total energy + Delta-G solvation = -2648.099237 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.93908 -37.41997 -36.16461 -35.84014 -34.06179 -30.31768 -30.15104 -25.70889 -22.30493 -21.26055 -19.80253 -18.40767 -17.50873 -16.23055 -15.93034 -15.35780 -14.95417 -13.81651 -13.60299 -12.80806 -12.35081 -12.24169 -12.16564 -11.89957 -11.66648 -11.65992 -11.63014 -11.56800 -11.25178 -11.10994 -10.72437 -9.98774 -9.83823 -9.52307 -8.34354 -7.94373 -7.09739 -4.71955 -0.73646 1.73872 2.43032 2.60761 2.92359 2.94290 2.99414 3.28175 3.71878 4.15545 4.21527 5.17574 5.79819 5.91134 6.42448 6.49908 6.55695 6.85388 6.92526 7.08346 7.47130 7.59008 7.71270 8.19496 8.45679 8.50127 9.85498 Molecular weight = 245.99amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.006847 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.201839 B = 4088.164036 C = 4321.913686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.453 4.453 8 H 0.088 0.912 9 C 0.093 3.907 10 C -0.108 4.108 11 C -0.114 4.114 12 C -0.146 4.146 13 C -0.590 4.590 14 S 2.455 3.545 15 O -0.884 6.884 16 O -0.880 6.880 17 Cl -0.499 7.499 18 C -0.122 4.122 19 H 0.286 0.714 20 H 0.130 0.870 21 H 0.106 0.894 22 H 0.114 0.886 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.229 -3.256 -0.365 3.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.482 4.482 8 H 0.106 0.894 9 C 0.089 3.911 10 C -0.128 4.128 11 C -0.134 4.134 12 C -0.168 4.168 13 C -0.687 4.687 14 S 2.557 3.443 15 O -0.882 6.882 16 O -0.878 6.878 17 Cl -0.498 7.498 18 C -0.144 4.144 19 H 0.097 0.903 20 H 0.148 0.852 21 H 0.124 0.876 22 H 0.132 0.868 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.313 -3.861 -0.060 3.874 hybrid contribution 0.012 1.324 -0.161 1.334 sum 0.325 -2.537 -0.221 2.568 Atomic orbital electron populations 1.69765 1.07746 1.30005 1.33659 1.25991 0.94848 1.01840 0.91874 0.86132 0.81047 0.80116 0.78838 1.18068 1.19444 1.19683 1.19710 0.98553 0.90754 1.39166 0.89437 1.17668 0.91809 0.91693 0.89924 1.21764 0.97230 0.97460 0.96338 1.20825 0.99407 0.92580 1.00558 1.20144 0.96309 0.98086 1.02260 1.28560 1.11217 1.13493 1.15422 1.09304 0.77682 0.78929 0.78343 1.93663 1.80912 1.59800 1.53868 1.93680 1.26294 1.86813 1.81039 1.99022 1.89368 1.95668 1.65719 1.20880 1.00645 0.91238 1.01617 0.90263 0.85198 0.87564 0.86824 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.29 10.95 55.55 0.61 -17.69 14 2 C 0.07 1.67 5.14 -17.34 -0.09 1.58 14 3 Si 0.92 16.99 29.59 -169.99 -5.03 11.95 14 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 14 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 14 6 H -0.27 -5.00 7.11 56.52 0.40 -4.60 14 7 C -0.45 -10.87 9.05 -37.74 -0.34 -11.21 14 8 H 0.09 2.01 7.91 -52.49 -0.41 1.60 14 9 C 0.09 2.25 5.57 -106.83 -0.60 1.65 14 10 C -0.11 -2.49 8.70 -38.88 -0.34 -2.83 14 11 C -0.11 -2.35 10.02 -39.66 -0.40 -2.75 14 12 C -0.15 -2.94 9.53 -39.29 -0.37 -3.32 14 13 C -0.59 -12.03 5.91 -39.66 -0.23 -12.26 14 14 S 2.46 44.04 6.06 -107.50 -0.65 43.39 14 15 O -0.88 -16.52 17.24 -57.17 -0.99 -17.50 14 16 O -0.88 -16.98 17.24 -57.17 -0.99 -17.97 14 17 Cl -0.50 -8.59 29.68 -51.86 -1.54 -10.13 14 18 C -0.12 -2.72 9.26 -38.87 -0.36 -3.08 14 19 H 0.29 5.99 8.30 -40.82 -0.34 5.66 14 20 H 0.13 3.03 6.15 -52.49 -0.32 2.71 14 21 H 0.11 1.87 8.06 -52.49 -0.42 1.45 14 22 H 0.11 2.01 7.60 -52.49 -0.40 1.62 14 23 H 0.12 2.51 7.60 -52.48 -0.40 2.11 14 LS Contribution 240.89 15.07 3.63 3.63 Total: -1.00 -26.09 240.89 -8.78 -34.87 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -1.09 Total: 1.65 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -2.73 Total: -32.21 kcal Atomic # 7 Polarization: -18.29 SS G_CDS: 0.61 Total: -17.69 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.97 Total: -35.47 kcal Atomic # 14 Polarization: 16.99 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 16 Polarization: 44.04 SS G_CDS: -0.65 Total: 43.39 kcal Atomic # 17 Polarization: -8.59 SS G_CDS: -1.54 Total: -10.13 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.09 -8.78 -34.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100560326.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.100 kcal (2) G-P(sol) polarization free energy of solvation -26.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds