Wall clock time and date at job start Mon Mar 30 2020 03:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86798 * 119.99905 * 2 1 4 4 H 1.48498 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.46977 * 299.99676 * 3 2 1 6 6 H 1.48501 * 109.47487 * 59.99605 * 3 2 1 7 7 C 1.39942 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 197.86327 * 7 2 1 9 9 C 1.41397 * 120.00058 * 17.87057 * 7 2 1 10 10 C 1.40730 * 120.24580 * 24.37725 * 9 7 2 11 11 C 1.37591 * 119.74738 * 179.97438 * 10 9 7 12 12 C 1.38667 * 120.24689 * 0.27182 * 11 10 9 13 13 C 1.38610 * 120.49841 * 359.45068 * 12 11 10 14 14 S 1.76205 * 119.87472 * 180.30143 * 13 12 11 15 15 O 1.42098 * 106.40000 * 23.78848 * 14 13 12 16 16 O 1.42105 * 106.39936 * 156.70779 * 14 13 12 17 17 Cl 2.01994 * 107.21631 * 270.24780 * 14 13 12 18 18 C 1.37644 * 120.24825 * 0.54947 * 13 12 11 19 19 H 0.96999 * 120.00195 * 0.02562 * 1 2 3 20 20 H 1.07999 * 120.12359 * 359.97438 * 10 9 7 21 21 H 1.08001 * 119.88212 * 179.97438 * 11 10 9 22 22 H 1.07999 * 119.74866 * 179.72447 * 12 11 10 23 23 H 1.08005 * 120.12522 * 179.74899 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3464 -0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2875 9 6 1.3522 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2106 11 6 -0.4090 -3.5319 -1.5697 12 6 0.0635 -4.7506 -1.1067 13 6 1.1802 -4.8068 -0.2876 14 16 1.7713 -6.3649 0.2848 15 8 1.3102 -7.3352 -0.6453 16 8 3.1447 -6.1817 0.6004 17 17 0.8322 -6.7561 2.0299 18 6 1.8262 -3.6497 0.0844 19 1 -0.4850 0.8400 -0.0004 20 1 -0.1514 -1.4141 -1.5687 21 1 -1.2776 -3.5002 -2.2108 22 1 -0.4398 -5.6631 -1.3901 23 1 2.6938 -3.6955 0.7261 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100560326.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:15 Heat of formation + Delta-G solvation = -83.881562 kcal Electronic energy + Delta-G solvation = -13320.059879 eV Core-core repulsion = 10671.270620 eV Total energy + Delta-G solvation = -2648.789259 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.990 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60378 -38.94816 -37.68429 -37.33140 -35.74690 -32.00904 -31.81478 -27.42722 -23.95101 -22.93200 -21.31871 -20.02705 -19.02090 -17.89950 -17.45432 -16.96644 -16.59292 -15.48876 -15.17726 -14.39558 -13.90126 -13.82723 -13.74771 -13.46204 -13.22346 -13.17140 -13.13022 -13.08944 -12.90585 -12.68175 -12.23020 -11.62874 -11.49359 -11.18372 -10.02011 -9.65291 -8.77270 -6.49641 -2.24416 0.10734 0.77033 1.07502 1.40106 1.45607 1.54842 1.77168 2.17822 2.53815 2.67546 3.43348 4.20202 4.32978 4.78003 4.80128 4.90090 5.15477 5.27051 5.40430 5.78869 5.86708 6.01383 6.45501 6.73295 6.76545 8.20710 Molecular weight = 245.99amu Principal moments of inertia in cm(-1) A = 0.039416 B = 0.006847 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.201839 B = 4088.164036 C = 4321.913686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.266 1.266 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.064 3.936 10 C -0.128 4.128 11 C -0.116 4.116 12 C -0.143 4.143 13 C -0.602 4.602 14 S 2.496 3.504 15 O -0.883 6.883 16 O -0.891 6.891 17 Cl -0.483 7.483 18 C -0.142 4.142 19 H 0.294 0.706 20 H 0.120 0.880 21 H 0.137 0.863 22 H 0.143 0.857 23 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.012 -3.907 -0.465 3.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.191 1.191 7 C -0.519 4.519 8 H 0.102 0.898 9 C 0.061 3.939 10 C -0.148 4.148 11 C -0.136 4.136 12 C -0.164 4.164 13 C -0.697 4.697 14 S 2.595 3.405 15 O -0.882 6.882 16 O -0.889 6.889 17 Cl -0.482 7.482 18 C -0.163 4.163 19 H 0.105 0.895 20 H 0.138 0.862 21 H 0.155 0.845 22 H 0.161 0.839 23 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.057 -4.499 -0.170 4.503 hybrid contribution 0.024 1.338 -0.106 1.343 sum 0.081 -3.161 -0.276 3.174 Atomic orbital electron populations 1.69791 1.08883 1.31227 1.34263 1.26737 0.95540 1.04519 0.90993 0.85126 0.79451 0.75986 0.79064 1.18220 1.18670 1.19105 1.19934 0.98789 0.91995 1.41226 0.89795 1.18013 0.92666 0.92630 0.90636 1.21804 0.97713 0.98093 0.97160 1.21183 0.99982 0.92021 1.00384 1.20601 0.95824 0.99031 1.00953 1.28921 1.10920 1.14576 1.15274 1.08184 0.76856 0.77431 0.77995 1.93659 1.80936 1.59143 1.54451 1.93667 1.27129 1.86712 1.81417 1.99025 1.89103 1.95407 1.64693 1.20968 1.01348 0.91629 1.02396 0.89490 0.86244 0.84520 0.83908 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -38.55 10.95 21.83 0.24 -38.31 14 2 C 0.04 1.77 5.14 85.25 0.44 2.21 14 3 Si 0.98 35.00 29.59 68.60 2.03 37.03 14 4 H -0.26 -9.15 7.11 99.48 0.71 -8.44 14 5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 14 6 H -0.27 -9.16 7.11 99.48 0.71 -8.46 14 7 C -0.49 -24.26 9.05 23.46 0.21 -24.04 14 8 H 0.08 4.01 7.91 -2.91 -0.02 3.99 14 9 C 0.06 3.17 5.57 -21.29 -0.12 3.05 14 10 C -0.13 -5.96 8.70 22.73 0.20 -5.76 14 11 C -0.12 -4.66 10.02 22.22 0.22 -4.43 14 12 C -0.14 -5.45 9.53 22.46 0.21 -5.24 14 13 C -0.60 -23.81 5.91 22.22 0.13 -23.68 14 14 S 2.50 84.34 6.06 -56.49 -0.34 84.00 14 15 O -0.88 -30.44 17.24 -128.00 -2.21 -32.65 14 16 O -0.89 -32.94 17.24 -128.00 -2.21 -35.14 14 17 Cl -0.48 -15.52 29.68 -2.72 -0.08 -15.60 14 18 C -0.14 -6.37 9.26 22.73 0.21 -6.16 14 19 H 0.29 12.42 8.30 -92.71 -0.77 11.65 14 20 H 0.12 5.72 6.15 -2.91 -0.02 5.70 14 21 H 0.14 4.51 8.06 -2.91 -0.02 4.49 14 22 H 0.14 4.56 7.60 -2.91 -0.02 4.54 14 23 H 0.12 5.22 7.60 -2.91 -0.02 5.20 14 Total: -1.00 -54.47 240.89 0.18 -54.29 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.24 Total: 10.45 kcal Atomic # 6 Polarization: -65.56 SS G_CDS: 1.51 Total: -64.05 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.24 Total: -38.31 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -4.41 Total: -67.79 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Atomic # 16 Polarization: 84.34 SS G_CDS: -0.34 Total: 84.00 kcal Atomic # 17 Polarization: -15.52 SS G_CDS: -0.08 Total: -15.60 kcal Total: -54.47 0.18 -54.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100560326.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.594 kcal (2) G-P(sol) polarization free energy of solvation -54.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds