Wall clock time and date at job start Mon Mar 30 2020 04:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12402 * 1 3 3 N 1.12391 * 179.97438 * 2 1 4 4 C 1.46498 * 119.99858 * 240.84670 * 3 2 1 5 5 C 1.50703 * 109.47208 * 120.00569 * 4 3 2 6 6 O 1.21276 * 119.99944 * 354.95726 * 5 4 3 7 7 N 1.34775 * 120.00078 * 174.95860 * 5 4 3 8 8 C 1.37139 * 120.00252 * 5.67785 * 7 5 4 9 9 H 1.08001 * 120.00273 * 55.66183 * 8 7 5 10 10 C 1.38891 * 119.99850 * 235.66995 * 8 7 5 11 11 N 1.31426 * 119.99769 * 9.24398 * 10 8 7 12 12 Si 1.86798 * 119.99931 * 189.23862 * 10 8 7 13 13 H 1.48499 * 109.46889 * 60.00367 * 12 10 8 14 14 H 1.48501 * 109.47104 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47476 * 300.00170 * 12 10 8 16 16 C 1.39791 * 119.99691 * 185.67510 * 7 5 4 17 17 C 1.38961 * 120.07354 * 175.18882 * 16 7 5 18 18 C 1.38086 * 119.91912 * 179.97438 * 17 16 7 19 19 C 1.38300 * 120.07791 * 0.02562 * 18 17 16 20 20 C 1.38311 * 120.15847 * 0.02562 * 19 18 17 21 21 C 1.38075 * 120.07589 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47459 * 0.02562 * 4 3 2 23 23 H 1.08997 * 109.47283 * 240.00161 * 4 3 2 24 24 H 0.96998 * 119.99353 * 184.98579 * 11 10 8 25 25 H 1.07996 * 120.04290 * 359.70736 * 17 16 7 26 26 H 1.08004 * 119.95758 * 179.97438 * 18 17 16 27 27 H 1.08001 * 119.92059 * 179.97438 * 19 18 17 28 28 H 1.07999 * 119.96045 * 180.02562 * 20 19 18 29 29 H 1.08002 * 120.03899 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2479 0.0005 0.0000 4 6 2.9801 0.6189 1.1080 5 6 3.8471 -0.4164 1.7771 6 8 3.7849 -1.5763 1.4287 7 7 4.6915 -0.0532 2.7627 8 6 4.6793 1.2336 3.2368 9 1 3.7611 1.6630 3.6097 10 6 5.8476 1.9847 3.2371 11 7 6.9181 1.5350 2.6214 12 14 5.8973 3.6341 4.1126 13 1 5.5958 3.4389 5.5535 14 1 7.2490 4.2314 3.9667 15 1 4.8868 4.5428 3.5142 16 6 5.5799 -0.9882 3.3018 17 6 6.5188 -0.5924 4.2467 18 6 7.3945 -1.5188 4.7776 19 6 7.3381 -2.8391 4.3695 20 6 6.4056 -3.2363 3.4284 21 6 5.5269 -2.3154 2.8934 22 1 2.2717 1.0218 1.8318 23 1 3.6064 1.4245 0.7249 24 1 7.7537 2.0237 2.6823 25 1 6.5665 0.4393 4.5623 26 1 8.1248 -1.2118 5.5117 27 1 8.0245 -3.5614 4.7860 28 1 6.3641 -4.2682 3.1124 29 1 4.7992 -2.6261 2.1583 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104703384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:38 Heat of formation + Delta-G solvation = 125.464632 kcal Electronic energy + Delta-G solvation = -17294.286525 eV Core-core repulsion = 14414.673773 eV Total energy + Delta-G solvation = -2879.612752 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.38346 -39.79564 -37.39490 -35.87771 -35.14586 -32.11972 -30.11853 -29.66759 -27.90399 -25.32973 -22.17392 -21.38068 -19.96625 -18.77406 -18.05203 -17.72134 -17.03501 -16.23495 -15.69744 -15.27945 -15.21827 -14.52943 -14.32086 -13.51453 -13.10251 -12.89826 -12.56213 -12.33200 -11.81176 -11.53259 -11.38440 -11.21813 -10.93619 -10.61245 -10.15302 -9.85987 -9.37128 -8.90910 -8.83779 -8.16521 -7.86748 -7.01430 -6.44993 -4.72817 1.56981 2.30952 2.49210 2.67291 2.94717 3.03865 3.04964 3.34135 3.61680 3.83929 4.39522 4.60316 5.01438 5.31977 5.50783 5.81614 5.85067 5.92117 6.01713 6.11122 6.62408 6.65491 6.80364 7.04803 7.09624 7.42714 7.53358 7.58779 7.66210 7.91840 8.31311 8.68429 9.05087 9.42995 9.85391 10.32535 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.010177 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.592515 B = 2750.568214 C = 4229.156767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.211 5.211 2 N 0.280 4.720 3 N -0.347 5.347 4 C 0.075 3.925 5 C 0.492 3.508 6 O -0.547 6.547 7 N -0.378 5.378 8 C -0.383 4.383 9 H 0.094 0.906 10 C 0.060 3.940 11 N -0.834 5.834 12 Si 0.915 3.085 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.267 1.267 16 C 0.183 3.817 17 C -0.104 4.104 18 C -0.124 4.124 19 C -0.170 4.170 20 C -0.120 4.120 21 C -0.190 4.190 22 H 0.088 0.912 23 H 0.137 0.863 24 H 0.278 0.722 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.093 0.860 1.600 2.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 N 0.282 4.718 3 N -0.262 5.262 4 C -0.056 4.056 5 C 0.281 3.719 6 O -0.430 6.430 7 N -0.087 5.087 8 C -0.510 4.510 9 H 0.112 0.888 10 C -0.151 4.151 11 N -0.465 5.465 12 Si 0.739 3.261 13 H -0.192 1.192 14 H -0.204 1.204 15 H -0.192 1.192 16 C 0.086 3.914 17 C -0.124 4.124 18 C -0.143 4.143 19 C -0.190 4.190 20 C -0.139 4.139 21 C -0.210 4.210 22 H 0.106 0.894 23 H 0.155 0.845 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.124 0.876 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.356 0.214 0.843 2.511 hybrid contribution 0.595 1.242 0.983 1.692 sum -1.761 1.456 1.826 2.924 Atomic orbital electron populations 1.87564 0.88921 1.35881 1.07967 1.41554 1.01780 1.12650 1.15823 1.70663 0.88025 1.38622 1.28933 1.22268 0.97240 0.96918 0.89136 1.20420 0.83218 0.88351 0.79886 1.90236 1.69144 1.19087 1.64528 1.40855 1.30138 1.09393 1.28267 1.19316 0.98296 0.87340 1.46074 0.88846 1.25631 0.95772 0.99065 0.94675 1.70020 1.01313 1.39820 1.35351 0.86188 0.78235 0.81402 0.80226 1.19218 1.20378 1.19159 1.18237 0.91839 0.88154 0.93128 1.21024 0.94599 0.99807 0.97007 1.20783 0.99494 0.93345 1.00666 1.20817 1.00967 0.95956 1.01229 1.20879 0.96473 0.98583 0.97952 1.22780 1.02715 0.92046 1.03417 0.89415 0.84494 0.91128 0.85042 0.87667 0.88073 0.87608 0.80879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.21 -3.24 20.57 60.35 1.24 -2.00 15 2 N 0.28 4.59 10.23 60.35 0.62 5.20 15 3 N -0.35 -6.17 10.81 -11.66 -0.13 -6.30 15 4 C 0.07 1.34 5.87 -5.19 -0.03 1.31 15 5 C 0.49 11.01 7.64 -10.98 -0.08 10.92 15 6 O -0.55 -13.19 12.83 5.56 0.07 -13.12 15 7 N -0.38 -8.94 2.62 -58.98 -0.15 -9.09 15 8 C -0.38 -8.68 7.61 -14.94 -0.11 -8.79 15 9 H 0.09 1.96 7.85 -52.49 -0.41 1.55 15 10 C 0.06 1.35 3.49 -17.48 -0.06 1.29 15 11 N -0.83 -20.32 11.39 55.49 0.63 -19.68 15 12 Si 0.91 17.28 29.57 -169.99 -5.03 12.26 15 13 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 14 H -0.28 -5.34 7.11 56.52 0.40 -4.94 15 15 H -0.27 -4.91 7.11 56.52 0.40 -4.51 15 16 C 0.18 4.42 6.05 -83.69 -0.51 3.91 15 17 C -0.10 -2.39 7.87 -39.37 -0.31 -2.70 15 18 C -0.12 -2.52 10.04 -39.61 -0.40 -2.92 15 19 C -0.17 -3.29 10.04 -39.53 -0.40 -3.69 15 20 C -0.12 -2.44 10.04 -39.61 -0.40 -2.84 15 21 C -0.19 -4.40 9.06 -39.37 -0.36 -4.76 15 22 H 0.09 1.38 8.04 -51.93 -0.42 0.96 15 23 H 0.14 2.34 8.05 -51.93 -0.42 1.93 15 24 H 0.28 6.43 8.32 -40.82 -0.34 6.10 15 25 H 0.13 3.10 5.15 -52.49 -0.27 2.83 15 26 H 0.11 1.85 8.06 -52.48 -0.42 1.42 15 27 H 0.10 1.64 8.06 -52.49 -0.42 1.22 15 28 H 0.11 1.85 8.06 -52.49 -0.42 1.43 15 29 H 0.18 4.18 4.50 -56.37 -0.25 3.93 15 LS Contribution 263.13 15.07 3.97 3.97 Total: -1.00 -26.15 263.13 -3.61 -29.76 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.17 Total: 7.27 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.65 Total: -8.27 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 2.21 Total: -31.87 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -26.15 -3.61 -29.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104703384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.223 kcal (2) G-P(sol) polarization free energy of solvation -26.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds