Wall clock time and date at job start Mon Mar 30 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12402 * 1 3 3 N 1.12391 * 179.97438 * 2 1 4 4 C 1.46498 * 119.99858 * 240.84670 * 3 2 1 5 5 C 1.50703 * 109.47208 * 120.00569 * 4 3 2 6 6 O 1.21276 * 119.99944 * 354.95726 * 5 4 3 7 7 N 1.34775 * 120.00078 * 174.95860 * 5 4 3 8 8 C 1.37139 * 120.00252 * 5.67785 * 7 5 4 9 9 H 1.08001 * 120.00273 * 55.66183 * 8 7 5 10 10 C 1.38891 * 119.99850 * 235.66995 * 8 7 5 11 11 N 1.31426 * 119.99769 * 9.24398 * 10 8 7 12 12 Si 1.86798 * 119.99931 * 189.23862 * 10 8 7 13 13 H 1.48499 * 109.46889 * 60.00367 * 12 10 8 14 14 H 1.48501 * 109.47104 * 179.97438 * 12 10 8 15 15 H 1.48490 * 109.47476 * 300.00170 * 12 10 8 16 16 C 1.39791 * 119.99691 * 185.67510 * 7 5 4 17 17 C 1.38961 * 120.07354 * 175.18882 * 16 7 5 18 18 C 1.38086 * 119.91912 * 179.97438 * 17 16 7 19 19 C 1.38300 * 120.07791 * 0.02562 * 18 17 16 20 20 C 1.38311 * 120.15847 * 0.02562 * 19 18 17 21 21 C 1.38075 * 120.07589 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.47459 * 0.02562 * 4 3 2 23 23 H 1.08997 * 109.47283 * 240.00161 * 4 3 2 24 24 H 0.96998 * 119.99353 * 184.98579 * 11 10 8 25 25 H 1.07996 * 120.04290 * 359.70736 * 17 16 7 26 26 H 1.08004 * 119.95758 * 179.97438 * 18 17 16 27 27 H 1.08001 * 119.92059 * 179.97438 * 19 18 17 28 28 H 1.07999 * 119.96045 * 180.02562 * 20 19 18 29 29 H 1.08002 * 120.03899 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1240 0.0000 0.0000 3 7 2.2479 0.0005 0.0000 4 6 2.9801 0.6189 1.1080 5 6 3.8471 -0.4164 1.7771 6 8 3.7849 -1.5763 1.4287 7 7 4.6915 -0.0532 2.7627 8 6 4.6793 1.2336 3.2368 9 1 3.7611 1.6630 3.6097 10 6 5.8476 1.9847 3.2371 11 7 6.9181 1.5350 2.6214 12 14 5.8973 3.6341 4.1126 13 1 5.5958 3.4389 5.5535 14 1 7.2490 4.2314 3.9667 15 1 4.8868 4.5428 3.5142 16 6 5.5799 -0.9882 3.3018 17 6 6.5188 -0.5924 4.2467 18 6 7.3945 -1.5188 4.7776 19 6 7.3381 -2.8391 4.3695 20 6 6.4056 -3.2363 3.4284 21 6 5.5269 -2.3154 2.8934 22 1 2.2717 1.0218 1.8318 23 1 3.6064 1.4245 0.7249 24 1 7.7537 2.0237 2.6823 25 1 6.5665 0.4393 4.5623 26 1 8.1248 -1.2118 5.5117 27 1 8.0245 -3.5614 4.7860 28 1 6.3641 -4.2682 3.1124 29 1 4.7992 -2.6261 2.1583 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104703384.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:37 Heat of formation + Delta-G solvation = 108.158665 kcal Electronic energy + Delta-G solvation = -17295.036968 eV Core-core repulsion = 14414.673773 eV Total energy + Delta-G solvation = -2880.363195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.72615 -41.47767 -39.02399 -37.27484 -36.84526 -33.85336 -31.67813 -31.30917 -29.46092 -27.05933 -23.79953 -23.02880 -21.62083 -20.30231 -19.52753 -19.07930 -18.52498 -17.84286 -17.38157 -16.84003 -16.68845 -16.12936 -15.91373 -15.14938 -14.73829 -14.52686 -14.12119 -13.96013 -13.41681 -13.16980 -13.03395 -12.78318 -12.48974 -12.13781 -11.75503 -11.20905 -11.04513 -10.56172 -10.35253 -9.75456 -9.53062 -8.72785 -8.15431 -6.48874 0.22801 0.65503 0.81574 1.31828 1.45676 1.50657 1.58814 1.83999 2.11805 2.26907 2.81472 2.92112 3.34402 3.88054 3.95514 4.32622 4.37343 4.44317 4.58063 4.62153 4.94053 5.00481 5.14577 5.35707 5.42351 5.79509 5.87945 5.89078 6.01934 6.22311 6.60636 6.96772 7.34069 7.72547 8.52092 8.63287 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.010177 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.592515 B = 2750.568214 C = 4229.156767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 N 0.282 4.718 3 N -0.365 5.365 4 C 0.086 3.914 5 C 0.478 3.522 6 O -0.574 6.574 7 N -0.390 5.390 8 C -0.393 4.393 9 H 0.107 0.893 10 C 0.028 3.972 11 N -0.871 5.871 12 Si 0.979 3.021 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.255 1.255 16 C 0.152 3.848 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.163 4.163 20 C -0.121 4.121 21 C -0.216 4.216 22 H 0.111 0.889 23 H 0.144 0.856 24 H 0.277 0.723 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.134 0.866 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 1.191 2.482 3.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 N 0.284 4.716 3 N -0.281 5.281 4 C -0.044 4.044 5 C 0.268 3.732 6 O -0.458 6.458 7 N -0.099 5.099 8 C -0.519 4.519 9 H 0.125 0.875 10 C -0.180 4.180 11 N -0.503 5.503 12 Si 0.801 3.199 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.179 1.179 16 C 0.056 3.944 17 C -0.144 4.144 18 C -0.144 4.144 19 C -0.182 4.182 20 C -0.140 4.140 21 C -0.236 4.236 22 H 0.129 0.871 23 H 0.162 0.838 24 H 0.086 0.914 25 H 0.138 0.862 26 H 0.152 0.848 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.393 0.546 1.724 2.999 hybrid contribution 0.554 1.039 0.717 1.379 sum -1.839 1.584 2.441 3.442 Atomic orbital electron populations 1.87550 0.88517 1.34890 1.06977 1.41494 1.01661 1.12475 1.15994 1.70681 0.88468 1.39758 1.29179 1.22148 0.97286 0.95480 0.89535 1.21129 0.83397 0.88974 0.79671 1.90214 1.70020 1.20362 1.65232 1.41120 1.30307 1.09761 1.28710 1.19703 0.99063 0.87187 1.45972 0.87538 1.26342 0.95068 1.01809 0.94752 1.70138 1.01866 1.41329 1.36976 0.85213 0.78021 0.77581 0.79100 1.19012 1.20963 1.17854 1.18608 0.92833 0.88845 0.94140 1.21081 0.95651 0.99942 0.97768 1.21174 0.99075 0.93515 1.00610 1.21231 1.00662 0.96255 1.00061 1.21240 0.95693 0.99454 0.97570 1.22809 1.03892 0.92580 1.04270 0.87117 0.83810 0.91354 0.86213 0.84820 0.84080 0.84834 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.19 -5.44 20.57 37.02 0.76 -4.68 15 2 N 0.28 8.92 10.23 37.02 0.38 9.29 15 3 N -0.37 -12.84 10.81 -190.79 -2.06 -14.90 15 4 C 0.09 3.05 5.87 85.63 0.50 3.55 15 5 C 0.48 21.76 7.64 87.66 0.67 22.43 15 6 O -0.57 -28.47 12.83 -3.02 -0.04 -28.51 15 7 N -0.39 -18.78 2.62 -458.90 -1.20 -19.98 15 8 C -0.39 -17.78 7.61 84.02 0.64 -17.14 15 9 H 0.11 4.38 7.85 -2.91 -0.02 4.36 15 10 C 0.03 1.26 3.49 84.91 0.30 1.55 15 11 N -0.87 -42.92 11.39 21.65 0.25 -42.68 15 12 Si 0.98 34.86 29.57 68.60 2.03 36.89 15 13 H -0.27 -9.30 7.11 99.48 0.71 -8.59 15 14 H -0.28 -10.30 7.11 99.48 0.71 -9.59 15 15 H -0.25 -8.51 7.11 99.48 0.71 -7.80 15 16 C 0.15 7.48 6.05 38.22 0.23 7.71 15 17 C -0.12 -5.71 7.87 22.41 0.18 -5.53 15 18 C -0.13 -4.88 10.04 22.25 0.22 -4.66 15 19 C -0.16 -5.88 10.04 22.30 0.22 -5.66 15 20 C -0.12 -4.77 10.04 22.25 0.22 -4.54 15 21 C -0.22 -10.15 9.06 22.40 0.20 -9.95 15 22 H 0.11 3.36 8.04 -2.39 -0.02 3.34 15 23 H 0.14 4.88 8.05 -2.39 -0.02 4.86 15 24 H 0.28 12.97 8.32 -92.71 -0.77 12.20 15 25 H 0.12 5.71 5.15 -2.91 -0.02 5.70 15 26 H 0.13 4.35 8.06 -2.91 -0.02 4.32 15 27 H 0.14 3.95 8.06 -2.91 -0.02 3.92 15 28 H 0.13 4.39 8.06 -2.91 -0.02 4.37 15 29 H 0.16 7.93 4.50 -64.48 -0.29 7.64 15 Total: -1.00 -56.47 263.13 4.41 -52.06 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: 0.91 Total: 24.74 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 3.39 Total: -12.24 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.88 Total: -72.94 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.04 Total: -28.51 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -56.47 4.41 -52.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104703384.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.216 kcal (2) G-P(sol) polarization free energy of solvation -56.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds