Wall clock time and date at job start Mon Mar 30 2020 03:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00253 * 2 1 4 4 H 1.48494 * 109.47137 * 270.00359 * 3 2 1 5 5 H 1.48504 * 109.46862 * 30.00341 * 3 2 1 6 6 H 1.48494 * 109.47345 * 150.00144 * 3 2 1 7 7 C 1.37875 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99770 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00642 * 179.97438 * 7 2 1 10 10 H 1.08997 * 109.46951 * 59.99530 * 9 7 2 11 11 O 1.42905 * 109.46811 * 300.00355 * 9 7 2 12 12 C 1.52994 * 109.47457 * 180.02562 * 9 7 2 13 13 C 1.50699 * 109.47365 * 185.00061 * 12 9 7 14 14 C 1.38250 * 119.98000 * 265.30398 * 13 12 9 15 15 C 1.38360 * 120.02290 * 180.29719 * 14 13 12 16 16 F 1.35104 * 120.00648 * 179.69241 * 15 14 13 17 17 C 1.38680 * 119.98115 * 359.42164 * 15 14 13 18 18 F 1.35101 * 120.02333 * 180.29973 * 17 15 14 19 19 C 1.38357 * 119.95961 * 0.27604 * 17 15 14 20 20 C 1.38424 * 119.97753 * 84.99754 * 13 12 9 21 21 F 1.35097 * 119.99232 * 0.02562 * 20 13 12 22 22 H 0.97008 * 119.99471 * 359.97438 * 1 2 3 23 23 H 0.96702 * 114.00198 * 299.99486 * 11 9 7 24 24 H 1.08995 * 109.47156 * 64.99981 * 12 9 7 25 25 H 1.08998 * 109.47150 * 304.99811 * 12 9 7 26 26 H 1.08004 * 119.98601 * 0.02562 * 14 13 12 27 27 H 1.07996 * 120.01306 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8752 -0.6805 0.8888 11 8 3.9874 -0.5202 -1.1679 12 6 4.0215 -2.6366 -0.0023 13 6 5.5234 -2.6385 0.1210 14 6 6.3096 -2.7020 -1.0144 15 6 7.6886 -2.7101 -0.9020 16 9 8.4566 -2.7783 -2.0114 17 6 8.2823 -2.6424 0.3495 18 9 9.6288 -2.6441 0.4600 19 6 7.4948 -2.5726 1.4850 20 6 6.1149 -2.5704 1.3706 21 9 5.3456 -2.5028 2.4791 22 1 -0.4850 0.8402 0.0004 23 1 3.7017 -0.9235 -1.9991 24 1 3.7327 -3.1232 -0.9338 25 1 3.5872 -3.1761 0.8393 26 1 5.8472 -2.7497 -1.9893 27 1 7.9562 -2.5195 2.4600 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116844748.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:27 Heat of formation + Delta-G solvation = -187.021499 kcal Electronic energy + Delta-G solvation = -17561.232950 eV Core-core repulsion = 14061.627540 eV Total energy + Delta-G solvation = -3499.605410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.58982 -50.05642 -49.66289 -40.12741 -37.99886 -34.44754 -33.62803 -31.55437 -30.06593 -27.20423 -24.49617 -23.65785 -22.17569 -19.56754 -19.30518 -18.94191 -18.20878 -17.56244 -16.95627 -16.69514 -16.65580 -16.16799 -16.04939 -15.98181 -15.51967 -15.34823 -15.04527 -14.87633 -14.10848 -13.75800 -13.42536 -13.00727 -12.95548 -12.62908 -12.44131 -12.23039 -11.80881 -11.26544 -10.87314 -10.57558 -10.11230 -9.54408 -8.36287 -6.50762 -0.34354 -0.20693 1.41674 1.43299 1.57669 2.07622 2.37273 2.55873 2.91758 2.98761 3.31327 3.37267 3.52813 3.87855 4.06763 4.34224 4.42863 4.49980 4.64116 4.69047 4.84698 4.98843 5.15249 5.45719 5.50093 5.61409 6.08243 6.62850 7.17772 7.32859 8.77630 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.006737 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.951533 B = 4155.419268 C = 4393.722506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.033 3.967 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.561 4.561 8 H 0.048 0.952 9 C 0.205 3.795 10 H 0.046 0.954 11 O -0.586 6.586 12 C -0.091 4.091 13 C -0.083 4.083 14 C -0.080 4.080 15 C 0.056 3.944 16 F -0.130 7.130 17 C 0.081 3.919 18 F -0.126 7.126 19 C -0.151 4.151 20 C 0.106 3.894 21 F -0.132 7.132 22 H 0.268 0.732 23 H 0.378 0.622 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.175 0.825 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.977 -6.031 -0.344 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.167 4.167 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.233 1.233 6 H -0.191 1.191 7 C -0.599 4.599 8 H 0.066 0.934 9 C 0.148 3.852 10 H 0.064 0.936 11 O -0.394 6.394 12 C -0.129 4.129 13 C -0.084 4.084 14 C -0.099 4.099 15 C 0.036 3.964 16 F -0.108 7.108 17 C 0.061 3.939 18 F -0.105 7.105 19 C -0.171 4.171 20 C 0.086 3.914 21 F -0.110 7.110 22 H 0.077 0.923 23 H 0.226 0.774 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.192 0.808 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 16.162 -5.563 0.106 17.092 hybrid contribution -0.214 0.407 -0.192 0.498 sum 15.947 -5.156 -0.086 16.760 Atomic orbital electron populations 1.70061 1.08163 1.28386 1.50864 1.25757 0.95200 1.03121 0.92669 0.85372 0.77943 0.78317 0.78708 1.19688 1.23331 1.19107 1.21864 0.92015 0.93639 1.52384 0.93368 1.19621 0.91012 0.88963 0.85639 0.93633 1.86338 1.77067 1.58845 1.17172 1.21115 0.88167 0.98996 1.04601 1.20028 0.97693 0.99483 0.91226 1.20958 0.89752 0.98475 1.00692 1.17679 0.89536 1.07662 0.81541 1.91524 1.74955 1.93978 1.50361 1.17218 0.77703 1.06398 0.92569 1.91533 1.28136 1.94049 1.96750 1.21008 0.91275 1.04542 1.00244 1.17378 0.88338 1.02923 0.82732 1.91534 1.75114 1.93472 1.50886 0.92305 0.77364 0.88477 0.90383 0.80774 0.80228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.34 13.96 21.45 0.30 -56.04 15 2 C 0.03 1.85 5.47 84.65 0.46 2.31 15 3 Si 0.97 46.56 26.18 68.60 1.80 48.36 15 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 15 5 H -0.31 -14.59 7.11 99.48 0.71 -13.88 15 6 H -0.27 -12.61 6.54 99.48 0.65 -11.95 15 7 C -0.56 -29.81 9.34 25.60 0.24 -29.57 15 8 H 0.05 2.77 7.99 -2.91 -0.02 2.75 15 9 C 0.21 8.79 2.29 29.84 0.07 8.86 15 10 H 0.05 2.12 7.20 -2.39 -0.02 2.11 15 11 O -0.59 -23.33 10.72 -148.98 -1.60 -24.92 15 12 C -0.09 -3.06 4.73 29.85 0.14 -2.92 15 13 C -0.08 -2.39 4.92 -19.82 -0.10 -2.49 15 14 C -0.08 -1.98 9.58 22.30 0.21 -1.77 15 15 C 0.06 1.40 7.31 22.40 0.16 1.56 15 16 F -0.13 -3.30 17.18 44.97 0.77 -2.53 15 17 C 0.08 1.97 7.31 22.40 0.16 2.14 15 18 F -0.13 -3.07 17.18 44.97 0.77 -2.29 15 19 C -0.15 -3.51 10.00 22.35 0.22 -3.28 15 20 C 0.11 2.98 7.24 22.37 0.16 3.14 15 21 F -0.13 -4.11 16.56 44.97 0.74 -3.37 15 22 H 0.27 15.20 8.31 -92.70 -0.77 14.43 15 23 H 0.38 12.49 9.04 -74.06 -0.67 11.83 15 24 H 0.10 2.87 8.05 -2.39 -0.02 2.85 15 25 H 0.08 2.72 7.79 -2.39 -0.02 2.70 15 26 H 0.17 3.54 8.06 -2.91 -0.02 3.52 15 27 H 0.18 3.16 8.06 -2.91 -0.02 3.14 15 Total: -1.00 -62.34 255.22 5.03 -57.31 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 0.50 Total: 5.50 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 1.74 Total: -22.02 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.30 Total: -56.04 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.60 Total: -24.92 kcal Atomic # 9 Polarization: -10.47 SS G_CDS: 2.29 Total: -8.18 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.80 Total: 48.36 kcal Total: -62.34 5.03 -57.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116844748.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.711 kcal (2) G-P(sol) polarization free energy of solvation -62.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds