Wall clock time and date at job start Mon Mar 30 2020 04:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35936 * 116.99542 * 2 1 4 4 C 1.38129 * 120.02623 * 359.97438 * 3 2 1 5 5 C 1.39762 * 119.87241 * 180.02562 * 4 3 2 6 6 C 1.43201 * 120.03721 * 180.02562 * 5 4 3 7 7 N 5.83995 * 81.24714 * 359.97438 * 2 1 3 8 8 C 1.39865 * 119.92159 * 0.02562 * 5 4 3 9 9 C 1.37670 * 120.04233 * 359.71887 * 8 5 4 10 10 C 1.39162 * 120.12400 * 0.55081 * 9 8 5 11 11 N 1.39175 * 119.96093 * 179.72038 * 10 9 8 12 12 C 1.34776 * 119.99759 * 34.80598 * 11 10 9 13 13 O 1.21770 * 120.00017 * 355.47435 * 12 11 10 14 14 C 1.41786 * 120.00345 * 175.47544 * 12 11 10 15 15 H 1.08006 * 119.99715 * 359.97438 * 14 12 11 16 16 C 1.40142 * 120.00230 * 179.72573 * 14 12 11 17 17 N 1.30629 * 119.99737 * 0.27104 * 16 14 12 18 18 Si 1.86796 * 119.99946 * 180.27374 * 16 14 12 19 19 H 1.48502 * 109.47301 * 59.99592 * 18 16 14 20 20 H 1.48499 * 109.47171 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47348 * 299.99735 * 18 16 14 22 22 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47171 * 300.00082 * 1 2 3 24 24 H 1.09006 * 109.46784 * 59.99657 * 1 2 3 25 25 H 1.08000 * 120.06246 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.98391 * 179.97438 * 8 5 4 27 27 H 1.07998 * 119.93747 * 180.27293 * 9 8 5 28 28 H 0.97000 * 120.00346 * 214.80401 * 11 10 9 29 29 H 0.96998 * 119.99207 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2942 2.3700 -0.0005 5 6 1.9320 3.6136 -0.0011 6 6 1.1560 4.8171 -0.0011 7 7 0.5404 5.7719 -0.0026 8 6 3.3290 3.6813 -0.0016 9 6 4.0751 2.5243 0.0042 10 6 3.4420 1.2850 -0.0009 11 7 4.1996 0.1175 -0.0008 12 6 5.3679 0.0724 0.6695 13 8 5.8012 1.0760 1.2061 14 6 6.0927 -1.1436 0.7501 15 1 5.7082 -2.0338 0.2745 16 6 7.3104 -1.1891 1.4422 17 7 7.7751 -0.1124 2.0177 18 14 8.2689 -2.7893 1.5418 19 1 8.6178 -3.2434 0.1716 20 1 9.5131 -2.5732 2.3230 21 1 7.4380 -3.8233 2.2094 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.2156 2.3150 -0.0005 26 1 3.8229 4.6418 -0.0025 27 1 5.1537 2.5785 0.0083 28 1 3.8867 -0.6638 -0.4832 29 1 8.6181 -0.1439 2.4965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135532469.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:20 Heat of formation + Delta-G solvation = -17.612593 kcal Electronic energy + Delta-G solvation = -16745.593045 eV Core-core repulsion = 13827.483248 eV Total energy + Delta-G solvation = -2918.109797 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13416 -37.98173 -37.27118 -35.78043 -33.64238 -32.50597 -30.07920 -29.52799 -27.25760 -26.63840 -23.19617 -22.02268 -20.15750 -19.10027 -17.73934 -16.54237 -16.34057 -15.76061 -15.60644 -15.25981 -14.22199 -13.87451 -13.74141 -13.60417 -13.39964 -12.95258 -12.68927 -12.36701 -12.01924 -11.92235 -11.50416 -11.27176 -11.13555 -11.10366 -10.78264 -10.67932 -10.41832 -9.43216 -8.94844 -8.32054 -7.78117 -7.08580 -6.44277 -4.97058 1.15388 1.75644 2.86786 3.03458 3.09898 3.11475 3.24192 3.47096 3.92531 4.14637 4.18122 4.37711 4.52574 5.06656 5.13587 5.22340 5.35662 5.51930 5.58294 5.66604 5.90750 6.19180 6.28845 6.57205 6.73912 7.10873 7.19059 7.47164 7.70015 7.76510 7.94774 8.07827 8.73677 9.17068 10.29788 10.48868 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.005781 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.762901 B = 4842.657614 C = 5594.939623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.312 6.312 3 C 0.064 3.936 4 C -0.138 4.138 5 C -0.060 4.060 6 C 0.274 3.726 7 N -0.450 5.450 8 C -0.073 4.073 9 C -0.109 4.109 10 C 0.209 3.791 11 N -0.687 5.687 12 C 0.542 3.458 13 O -0.566 6.566 14 C -0.534 4.534 15 H 0.071 0.929 16 C 0.088 3.912 17 N -0.745 5.745 18 Si 0.914 3.086 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 H 0.096 0.904 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.162 0.838 28 H 0.399 0.601 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.767 -1.493 -4.397 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.016 3.984 4 C -0.160 4.160 5 C -0.065 4.065 6 C -0.040 4.040 7 N -0.126 5.126 8 C -0.095 4.095 9 C -0.130 4.130 10 C 0.106 3.894 11 N -0.329 5.329 12 C 0.352 3.648 13 O -0.449 6.449 14 C -0.569 4.569 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.372 5.372 18 Si 0.738 3.262 19 H -0.190 1.190 20 H -0.203 1.203 21 H -0.190 1.190 22 H 0.115 0.885 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.179 0.821 28 H 0.233 0.767 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.073 0.486 -3.860 9.872 hybrid contribution 0.165 -1.446 -0.090 1.458 sum -8.908 -0.959 -3.949 9.791 Atomic orbital electron populations 1.22990 0.79075 1.03583 1.00974 1.86078 1.20643 1.26159 1.89640 1.18661 0.90911 0.84347 1.04487 1.20757 0.99279 0.90372 1.05635 1.15572 0.91666 0.86389 1.12900 1.25804 0.92815 0.92812 0.92602 1.81185 1.09444 1.10960 1.11054 1.20973 0.90907 0.99074 0.98501 1.21355 1.02343 0.88993 1.00320 1.17629 0.86529 0.89420 0.95816 1.44104 1.23632 1.11670 1.53527 1.17095 0.78445 0.90687 0.78601 1.90635 1.67685 1.36660 1.49956 1.20019 1.05669 0.95913 1.35266 0.91038 1.25762 0.97100 0.97457 0.93253 1.69986 1.16996 1.28180 1.22078 0.86317 0.78842 0.81837 0.79210 1.18996 1.20331 1.19012 0.88517 0.92932 0.93020 0.85281 0.85371 0.82068 0.76728 0.91468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 15 2 O -0.31 -4.67 10.04 -19.54 -0.20 -4.87 15 3 C 0.06 1.04 6.70 -39.04 -0.26 0.78 15 4 C -0.14 -1.98 8.74 -39.05 -0.34 -2.32 15 5 C -0.06 -0.89 5.74 -106.79 -0.61 -1.51 15 6 C 0.27 4.16 15.32 -22.47 -0.34 3.81 15 7 N -0.45 -7.46 18.54 41.84 0.78 -6.68 15 8 C -0.07 -1.15 9.74 -39.18 -0.38 -1.53 15 9 C -0.11 -2.06 8.66 -39.45 -0.34 -2.40 15 10 C 0.21 4.04 6.32 -83.61 -0.53 3.51 15 11 N -0.69 -14.64 5.14 -12.30 -0.06 -14.70 15 12 C 0.54 14.15 7.41 -14.90 -0.11 14.04 15 13 O -0.57 -16.46 12.27 5.13 0.06 -16.39 15 14 C -0.53 -13.85 9.31 -37.51 -0.35 -14.20 15 15 H 0.07 1.68 7.85 -52.48 -0.41 1.27 15 16 C 0.09 2.25 5.50 -17.35 -0.10 2.16 15 17 N -0.75 -20.55 11.73 55.56 0.65 -19.90 15 18 Si 0.91 18.60 29.56 -169.99 -5.02 13.58 15 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 22 H 0.10 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.05 0.49 7.66 -51.93 -0.40 0.09 15 24 H 0.05 0.45 7.66 -51.93 -0.40 0.05 15 25 H 0.13 1.50 6.28 -52.49 -0.33 1.17 15 26 H 0.13 1.75 8.06 -52.49 -0.42 1.33 15 27 H 0.16 3.48 6.18 -52.49 -0.32 3.15 15 28 H 0.40 7.52 8.51 -40.82 -0.35 7.18 15 29 H 0.27 6.86 8.29 -40.82 -0.34 6.52 15 LS Contribution 270.48 15.07 4.08 4.08 Total: -1.00 -30.78 270.48 -4.28 -35.06 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -2.19 Total: 6.20 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -2.38 Total: 3.62 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 1.36 Total: -41.28 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.13 Total: -21.26 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.78 -4.28 -35.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135532469.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.451 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds