Wall clock time and date at job start Mon Mar 30 2020 04:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35936 * 116.99542 * 2 1 4 4 C 1.38129 * 120.02623 * 359.97438 * 3 2 1 5 5 C 1.39762 * 119.87241 * 180.02562 * 4 3 2 6 6 C 1.43201 * 120.03721 * 180.02562 * 5 4 3 7 7 N 5.83995 * 81.24714 * 359.97438 * 2 1 3 8 8 C 1.39865 * 119.92159 * 0.02562 * 5 4 3 9 9 C 1.37670 * 120.04233 * 359.71887 * 8 5 4 10 10 C 1.39162 * 120.12400 * 0.55081 * 9 8 5 11 11 N 1.39175 * 119.96093 * 179.72038 * 10 9 8 12 12 C 1.34776 * 119.99759 * 34.80598 * 11 10 9 13 13 O 1.21770 * 120.00017 * 355.47435 * 12 11 10 14 14 C 1.41786 * 120.00345 * 175.47544 * 12 11 10 15 15 H 1.08006 * 119.99715 * 359.97438 * 14 12 11 16 16 C 1.40142 * 120.00230 * 179.72573 * 14 12 11 17 17 N 1.30629 * 119.99737 * 0.27104 * 16 14 12 18 18 Si 1.86796 * 119.99946 * 180.27374 * 16 14 12 19 19 H 1.48502 * 109.47301 * 59.99592 * 18 16 14 20 20 H 1.48499 * 109.47171 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47348 * 299.99735 * 18 16 14 22 22 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47171 * 300.00082 * 1 2 3 24 24 H 1.09006 * 109.46784 * 59.99657 * 1 2 3 25 25 H 1.08000 * 120.06246 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.98391 * 179.97438 * 8 5 4 27 27 H 1.07998 * 119.93747 * 180.27293 * 9 8 5 28 28 H 0.97000 * 120.00346 * 214.80401 * 11 10 9 29 29 H 0.96998 * 119.99207 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2942 2.3700 -0.0005 5 6 1.9320 3.6136 -0.0011 6 6 1.1560 4.8171 -0.0011 7 7 0.5404 5.7719 -0.0026 8 6 3.3290 3.6813 -0.0016 9 6 4.0751 2.5243 0.0042 10 6 3.4420 1.2850 -0.0009 11 7 4.1996 0.1175 -0.0008 12 6 5.3679 0.0724 0.6695 13 8 5.8012 1.0760 1.2061 14 6 6.0927 -1.1436 0.7501 15 1 5.7082 -2.0338 0.2745 16 6 7.3104 -1.1891 1.4422 17 7 7.7751 -0.1124 2.0177 18 14 8.2689 -2.7893 1.5418 19 1 8.6178 -3.2434 0.1716 20 1 9.5131 -2.5732 2.3230 21 1 7.4380 -3.8233 2.2094 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.2156 2.3150 -0.0005 26 1 3.8229 4.6418 -0.0025 27 1 5.1537 2.5785 0.0083 28 1 3.8867 -0.6638 -0.4832 29 1 8.6181 -0.1439 2.4965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135532469.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:20 Heat of formation + Delta-G solvation = -38.594176 kcal Electronic energy + Delta-G solvation = -16746.502874 eV Core-core repulsion = 13827.483248 eV Total energy + Delta-G solvation = -2919.019627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.47790 -39.58873 -38.59377 -37.16289 -35.34249 -34.44371 -31.45649 -30.93199 -28.58751 -28.09877 -24.68624 -23.31970 -21.90427 -20.35044 -19.49628 -18.03178 -17.67793 -17.48593 -16.77837 -16.54676 -15.82840 -15.23688 -15.12078 -14.90336 -14.76875 -14.50873 -14.36886 -13.67707 -13.36408 -13.26929 -13.11689 -12.71974 -12.68574 -12.49355 -12.22828 -12.04009 -11.87873 -11.07100 -10.77897 -9.88243 -9.51813 -8.60525 -8.35191 -6.97716 -0.18103 0.45537 1.43506 1.44380 1.57793 1.61311 1.91432 2.23631 2.38621 2.43096 2.81588 2.92473 3.01828 3.65185 3.89702 4.13150 4.22901 4.46261 4.50778 4.55642 4.82318 4.89984 4.97278 5.23631 5.27353 5.37992 5.68528 5.91631 6.15950 6.17169 6.44716 6.57415 6.77434 7.38613 8.39828 8.58498 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032865 B = 0.005781 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.762901 B = 4842.657614 C = 5594.939623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.329 6.329 3 C 0.076 3.924 4 C -0.124 4.124 5 C -0.043 4.043 6 C 0.292 3.708 7 N -0.465 5.465 8 C -0.069 4.069 9 C -0.124 4.124 10 C 0.171 3.829 11 N -0.685 5.685 12 C 0.531 3.469 13 O -0.607 6.607 14 C -0.563 4.563 15 H 0.089 0.911 16 C 0.034 3.966 17 N -0.797 5.797 18 Si 0.998 3.002 19 H -0.253 1.253 20 H -0.274 1.274 21 H -0.255 1.255 22 H 0.118 0.882 23 H 0.063 0.937 24 H 0.071 0.929 25 H 0.166 0.834 26 H 0.147 0.853 27 H 0.126 0.874 28 H 0.408 0.592 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -2.417 -4.836 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.028 3.972 4 C -0.146 4.146 5 C -0.048 4.048 6 C -0.022 4.022 7 N -0.141 5.141 8 C -0.090 4.090 9 C -0.145 4.145 10 C 0.070 3.930 11 N -0.328 5.328 12 C 0.341 3.659 13 O -0.494 6.494 14 C -0.598 4.598 15 H 0.107 0.893 16 C -0.184 4.184 17 N -0.425 5.425 18 Si 0.817 3.183 19 H -0.177 1.177 20 H -0.198 1.198 21 H -0.179 1.179 22 H 0.137 0.863 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.184 0.816 26 H 0.165 0.835 27 H 0.144 0.856 28 H 0.243 0.757 29 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.054 -0.427 -4.332 11.881 hybrid contribution 0.558 -1.065 0.001 1.203 sum -10.496 -1.492 -4.331 11.452 Atomic orbital electron populations 1.23392 0.76240 1.05707 1.02424 1.86073 1.23518 1.25430 1.89293 1.18546 0.89763 0.85704 1.03171 1.21064 1.00922 0.89050 1.03546 1.15554 0.91084 0.86773 1.11384 1.25545 0.92256 0.92327 0.92035 1.81228 1.10129 1.11338 1.11415 1.21036 0.91412 0.98750 0.97845 1.21076 1.00996 0.90420 1.02021 1.17864 0.88053 0.88633 0.98445 1.43586 1.22777 1.12888 1.53511 1.17367 0.79592 0.90402 0.78562 1.90597 1.69262 1.37848 1.51742 1.20545 1.06593 0.96620 1.35997 0.89267 1.26952 0.97919 1.01485 0.92074 1.70133 1.17862 1.31149 1.23394 0.85056 0.77047 0.76453 0.79750 1.17721 1.19817 1.17912 0.86347 0.91837 0.91004 0.81634 0.83482 0.85610 0.75694 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 15 2 O -0.33 -9.19 10.04 -92.83 -0.93 -10.12 15 3 C 0.08 2.38 6.70 22.62 0.15 2.53 15 4 C -0.12 -3.17 8.74 22.61 0.20 -2.97 15 5 C -0.04 -1.18 5.74 -21.27 -0.12 -1.30 15 6 C 0.29 8.04 15.32 88.33 1.35 9.39 15 7 N -0.46 -14.17 18.54 19.00 0.35 -13.82 15 8 C -0.07 -2.14 9.74 22.53 0.22 -1.92 15 9 C -0.12 -4.86 8.66 22.36 0.19 -4.67 15 10 C 0.17 6.72 6.32 38.57 0.24 6.96 15 11 N -0.68 -30.12 5.14 -311.01 -1.60 -31.71 15 12 C 0.53 28.99 7.41 85.12 0.63 29.62 15 13 O -0.61 -37.40 12.27 -4.57 -0.06 -37.46 15 14 C -0.56 -29.94 9.31 23.61 0.22 -29.72 15 15 H 0.09 4.23 7.85 -2.91 -0.02 4.21 15 16 C 0.03 1.80 5.50 85.33 0.47 2.27 15 17 N -0.80 -45.64 11.73 21.85 0.26 -45.38 15 18 Si 1.00 38.21 29.56 68.60 2.03 40.24 15 19 H -0.25 -9.13 7.11 99.48 0.71 -8.42 15 20 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 21 H -0.26 -9.27 7.11 99.48 0.71 -8.56 15 22 H 0.12 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.06 0.93 7.66 -2.39 -0.02 0.92 15 24 H 0.07 0.92 7.66 -2.38 -0.02 0.91 15 25 H 0.17 3.03 6.28 -2.91 -0.02 3.01 15 26 H 0.15 3.90 8.06 -2.91 -0.02 3.88 15 27 H 0.13 5.88 6.18 -2.91 -0.02 5.86 15 28 H 0.41 15.74 8.51 -92.71 -0.79 14.95 15 29 H 0.28 14.46 8.29 -92.71 -0.77 13.69 15 Total: -1.00 -69.37 270.48 5.14 -64.22 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.42 Total: 22.47 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.67 Total: 11.57 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -0.99 Total: -90.92 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.99 Total: -47.58 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -69.37 5.14 -64.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135532469.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.631 kcal (2) G-P(sol) polarization free energy of solvation -69.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds