Wall clock time and date at job start Mon Mar 30 2020 03:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.29022 * 126.43773 * 269.68709 * 10 9 7 12 12 N 1.28739 * 108.80922 * 179.83763 * 11 10 9 13 13 N 1.28835 * 109.40014 * 0.43529 * 12 11 10 14 14 C 1.31080 * 107.98505 * 359.73601 * 13 12 11 15 15 C 1.50700 * 126.65558 * 179.97438 * 14 13 12 16 16 Br 1.96597 * 109.47187 * 270.04276 * 15 14 13 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 19 19 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 20 20 H 1.09006 * 109.47526 * 30.04283 * 15 14 13 21 21 H 1.09004 * 109.46817 * 150.04230 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.6966 -4.1942 -1.0507 12 7 3.4981 -5.1249 -0.6650 13 7 3.5239 -5.1609 0.6226 14 6 2.7223 -4.2252 1.0698 15 6 2.4371 -3.8989 2.5132 16 35 0.9049 -4.9623 3.1351 17 1 -0.4850 0.8401 -0.0004 18 1 0.6242 -2.5609 0.8844 19 1 0.6244 -2.5529 -0.8956 20 1 3.3124 -4.1343 3.1188 21 1 2.2051 -2.8380 2.6069 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140464493.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:17 Heat of formation + Delta-G solvation = 102.870059 kcal Electronic energy + Delta-G solvation = -10805.533942 eV Core-core repulsion = 8572.247786 eV Total energy + Delta-G solvation = -2233.286156 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.981 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.47199 -35.30533 -33.43323 -32.93712 -30.49791 -28.44628 -26.80118 -24.24038 -22.51370 -21.11978 -17.38475 -16.54111 -15.91061 -14.95423 -14.46183 -14.04494 -12.96757 -12.80813 -12.57157 -11.98364 -11.64069 -11.37378 -11.06633 -10.68464 -10.62267 -10.47219 -9.99959 -9.80603 -9.65714 -9.27533 -8.92967 -6.56701 -4.68115 1.26911 2.23222 2.85530 2.96918 3.04948 3.14408 3.19935 4.05253 4.20373 4.71031 4.82654 5.35321 5.47535 5.90746 6.12854 6.53064 6.82174 6.95837 7.34926 7.46369 8.35862 9.01470 9.25688 10.51834 Molecular weight = 245.98amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.009392 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.090645 B = 2980.435121 C = 3633.620265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.236 3.764 10 N -0.252 5.252 11 N -0.089 5.089 12 N -0.105 5.105 13 N -0.304 5.304 14 C 0.155 3.845 15 C 0.010 3.990 16 Br -0.132 7.132 17 H 0.273 0.727 18 H 0.070 0.930 19 H 0.071 0.929 20 H 0.133 0.867 21 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -4.724 7.991 9.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.132 4.132 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.118 3.882 10 N -0.055 5.055 11 N -0.075 5.075 12 N -0.098 5.098 13 N -0.158 5.158 14 C -0.123 4.123 15 C -0.108 4.108 16 Br -0.053 7.053 17 H 0.083 0.917 18 H 0.088 0.912 19 H 0.089 0.911 20 H 0.151 0.849 21 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.206 -5.688 7.164 9.150 hybrid contribution 0.108 1.804 0.381 1.847 sum 0.314 -3.883 7.545 8.491 Atomic orbital electron populations 1.69912 1.06102 1.28355 1.47227 1.24910 0.95043 0.99663 0.93563 0.86194 0.79963 0.81802 0.78206 1.19390 1.20282 1.20286 1.21142 0.93807 0.88777 1.55609 0.91251 1.20369 0.86070 0.79787 1.01936 1.49194 1.29570 1.24203 1.02511 1.78804 1.09278 1.05809 1.13611 1.78465 1.14403 1.13473 1.03484 1.74802 1.18575 1.18309 1.04121 1.25008 0.98531 0.95209 0.93522 1.22875 0.96791 1.02546 0.88637 1.97420 1.44958 1.73898 1.89036 0.91701 0.91196 0.91108 0.84868 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.48 13.29 55.43 0.74 -21.74 14 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 14 3 Si 0.91 19.28 29.54 -169.99 -5.02 14.26 14 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 14 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 14 6 H -0.28 -5.73 7.11 56.52 0.40 -5.33 14 7 C -0.55 -13.63 9.39 -34.44 -0.32 -13.95 14 8 H 0.07 1.75 7.81 -52.49 -0.41 1.34 14 9 C 0.24 5.34 5.82 -5.20 -0.03 5.31 14 10 N -0.25 -5.44 3.33 -59.45 -0.20 -5.64 14 11 N -0.09 -2.02 13.29 60.35 0.80 -1.22 14 12 N -0.11 -2.34 13.43 60.35 0.81 -1.53 14 13 N -0.30 -6.28 12.36 32.70 0.40 -5.88 14 14 C 0.16 2.98 7.44 -155.43 -1.16 1.82 14 15 C 0.01 0.14 6.74 36.01 0.24 0.39 14 16 Br -0.13 -1.92 33.92 -68.01 -2.31 -4.23 14 17 H 0.27 6.57 8.31 -40.82 -0.34 6.23 14 18 H 0.07 1.54 7.74 -51.93 -0.40 1.13 14 19 H 0.07 1.70 8.14 -51.93 -0.42 1.28 14 20 H 0.13 1.59 8.14 -51.93 -0.42 1.17 14 21 H 0.14 2.00 7.81 -51.93 -0.41 1.59 14 LS Contribution 223.28 15.07 3.36 3.36 Total: -1.00 -26.74 223.28 -3.97 -30.71 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: -1.20 Total: -3.39 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.36 Total: -4.70 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 2.56 Total: -36.01 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 35 Polarization: -1.92 SS G_CDS: -2.31 Total: -4.23 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -26.74 -3.97 -30.71 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140464493.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.575 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds