Wall clock time and date at job start Mon Mar 30 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 N 1.29022 * 126.43773 * 269.68709 * 10 9 7 12 12 N 1.28739 * 108.80922 * 179.83763 * 11 10 9 13 13 N 1.28835 * 109.40014 * 0.43529 * 12 11 10 14 14 C 1.31080 * 107.98505 * 359.73601 * 13 12 11 15 15 C 1.50700 * 126.65558 * 179.97438 * 14 13 12 16 16 Br 1.96597 * 109.47187 * 270.04276 * 15 14 13 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 19 19 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 20 20 H 1.09006 * 109.47526 * 30.04283 * 15 14 13 21 21 H 1.09004 * 109.46817 * 150.04230 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 7 2.6966 -4.1942 -1.0507 12 7 3.4981 -5.1249 -0.6650 13 7 3.5239 -5.1609 0.6226 14 6 2.7223 -4.2252 1.0698 15 6 2.4371 -3.8989 2.5132 16 35 0.9049 -4.9623 3.1351 17 1 -0.4850 0.8401 -0.0004 18 1 0.6242 -2.5609 0.8844 19 1 0.6244 -2.5529 -0.8956 20 1 3.3124 -4.1343 3.1188 21 1 2.2051 -2.8380 2.6069 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140464493.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:16 Heat of formation + Delta-G solvation = 86.332755 kcal Electronic energy + Delta-G solvation = -10806.251053 eV Core-core repulsion = 8572.247786 eV Total energy + Delta-G solvation = -2234.003267 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.981 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.14328 -37.04265 -34.91504 -34.77987 -31.89607 -30.21866 -28.19818 -26.05605 -24.19866 -22.75018 -19.21342 -18.24495 -17.66166 -16.53668 -16.08219 -15.48012 -14.63644 -14.20796 -14.10719 -13.72075 -13.35224 -13.10380 -12.74070 -12.50654 -12.28279 -12.19831 -11.44593 -11.20014 -10.98908 -10.90501 -10.79566 -8.44607 -6.62371 -0.09703 0.66708 1.21369 1.37152 1.39456 1.44478 1.55176 2.30766 2.75349 2.90676 3.32890 3.99243 4.16979 4.38755 4.46330 4.70434 5.05990 5.22366 5.46838 5.59210 6.44385 7.10791 7.57386 8.64513 Molecular weight = 245.98amu Principal moments of inertia in cm(-1) A = 0.027686 B = 0.009392 C = 0.007704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.090645 B = 2980.435121 C = 3633.620265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.037 3.963 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.566 4.566 8 H 0.059 0.941 9 C 0.249 3.751 10 N -0.263 5.263 11 N -0.112 5.112 12 N -0.113 5.113 13 N -0.311 5.311 14 C 0.170 3.830 15 C 0.008 3.992 16 Br -0.124 7.124 17 H 0.278 0.722 18 H 0.078 0.922 19 H 0.051 0.949 20 H 0.167 0.833 21 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 -4.201 9.067 10.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.167 4.167 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.605 4.605 8 H 0.077 0.923 9 C 0.131 3.869 10 N -0.066 5.066 11 N -0.099 5.099 12 N -0.106 5.106 13 N -0.165 5.165 14 C -0.108 4.108 15 C -0.110 4.110 16 Br -0.045 7.045 17 H 0.087 0.913 18 H 0.096 0.904 19 H 0.069 0.931 20 H 0.185 0.815 21 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.564 -5.179 8.246 9.754 hybrid contribution -0.017 1.581 0.075 1.583 sum 0.547 -3.598 8.321 9.083 Atomic orbital electron populations 1.69974 1.07199 1.29378 1.47685 1.25602 0.95706 1.02374 0.92984 0.85294 0.78493 0.78248 0.78436 1.19660 1.20312 1.19085 1.21253 0.93413 0.89846 1.55947 0.92289 1.20092 0.85912 0.79616 1.01261 1.49110 1.29980 1.24403 1.03086 1.78786 1.10087 1.06491 1.14540 1.78435 1.14391 1.13458 1.04351 1.74785 1.19197 1.18930 1.03542 1.25727 0.96751 0.93656 0.94693 1.23173 0.98439 1.03054 0.86320 1.97439 1.44715 1.73740 1.88585 0.91271 0.90385 0.93087 0.81498 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.55 13.29 21.45 0.28 -45.26 14 2 C 0.04 1.78 5.46 84.66 0.46 2.25 14 3 Si 0.97 38.54 29.54 68.60 2.03 40.57 14 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 14 5 H -0.28 -10.98 7.11 99.48 0.71 -10.28 14 6 H -0.27 -10.03 7.11 99.48 0.71 -9.32 14 7 C -0.57 -27.47 9.39 25.60 0.24 -27.23 14 8 H 0.06 2.95 7.81 -2.91 -0.02 2.92 14 9 C 0.25 11.22 5.82 85.64 0.50 11.71 14 10 N -0.26 -11.23 3.33 -342.00 -1.14 -12.37 14 11 N -0.11 -5.12 13.29 37.02 0.49 -4.63 14 12 N -0.11 -4.97 13.43 37.01 0.50 -4.47 14 13 N -0.31 -12.45 12.36 -50.45 -0.62 -13.07 14 14 C 0.17 6.26 7.44 138.13 1.03 7.29 14 15 C 0.01 0.22 6.74 71.24 0.48 0.70 14 16 Br -0.12 -3.35 33.92 -20.37 -0.69 -4.04 14 17 H 0.28 13.09 8.31 -92.70 -0.77 12.32 14 18 H 0.08 3.37 7.74 -2.38 -0.02 3.35 14 19 H 0.05 2.49 8.14 -2.39 -0.02 2.47 14 20 H 0.17 3.43 8.14 -2.38 -0.02 3.41 14 21 H 0.14 3.83 7.81 -2.39 -0.02 3.81 14 Total: -1.00 -54.80 223.28 4.81 -49.99 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: 1.25 Total: -1.43 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 2.71 Total: -5.28 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -0.49 Total: -79.80 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Atomic # 35 Polarization: -3.35 SS G_CDS: -0.69 Total: -4.04 kcal Total: -54.80 4.81 -49.99 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140464493.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.321 kcal (2) G-P(sol) polarization free energy of solvation -54.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds