Wall clock time and date at job start Mon Mar 30 2020 03:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39995 * 120.00738 * 2.01515 * 3 2 1 5 5 C 1.37647 * 120.23960 * 179.72256 * 4 3 2 6 6 C 1.38921 * 120.24551 * 0.51830 * 5 4 3 7 7 O 1.35525 * 119.99958 * 179.76398 * 6 5 4 8 8 C 1.40319 * 120.00410 * 359.48433 * 6 5 4 9 9 C 1.47579 * 120.11620 * 180.27979 * 8 6 5 10 10 O 1.21585 * 119.99987 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99450 * 180.02562 * 9 8 6 12 12 C 1.46508 * 119.99533 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.46870 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99690 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99855 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00262 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00230 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47148 * 89.99740 * 17 15 13 19 19 H 1.48500 * 109.47625 * 210.00082 * 17 15 13 20 20 H 1.48507 * 109.47146 * 330.00269 * 17 15 13 21 21 C 1.39317 * 120.00262 * 182.00119 * 3 2 1 22 22 H 1.07998 * 119.87793 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.88040 * 180.25685 * 5 4 3 24 24 H 0.96696 * 114.00027 * 269.72219 * 7 6 5 25 25 H 0.97002 * 120.00333 * 0.02562 * 11 9 8 26 26 H 1.08994 * 109.47256 * 300.00010 * 12 11 9 27 27 H 1.08998 * 109.46945 * 60.00493 * 12 11 9 28 28 H 0.96994 * 119.99722 * 180.02562 * 16 15 13 29 29 H 1.07991 * 120.12290 * 0.03480 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -1.2106 -0.0426 5 6 4.6451 -1.2154 -0.0486 6 6 5.3492 -0.0187 -0.0015 7 8 6.7044 -0.0294 -0.0028 8 6 4.6573 1.2013 0.0415 9 6 5.4028 2.4742 0.0853 10 8 6.6187 2.4669 0.0847 11 7 4.7358 3.6446 0.1271 12 6 5.4759 4.9082 0.1712 13 6 4.5034 6.0587 0.2118 14 1 3.4404 5.8677 0.2058 15 6 4.9707 7.3550 0.2566 16 7 4.1220 8.3592 0.2925 17 14 6.8092 7.6854 0.2662 18 1 7.2949 7.8218 -1.1305 19 1 7.0827 8.9411 1.0102 20 1 7.5117 6.5558 0.9264 21 6 3.2641 1.2067 0.0421 22 1 2.7272 -2.1445 -0.0759 23 1 5.1797 -2.1530 -0.0857 24 1 7.0983 -0.0633 0.8797 25 1 3.7658 3.6503 0.1287 26 1 6.1035 4.9308 1.0620 27 1 6.1022 4.9936 -0.7168 28 1 4.4508 9.2711 0.3236 29 1 2.7257 2.1423 0.0754 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140731758.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:15 Heat of formation + Delta-G solvation = -22.967334 kcal Electronic energy + Delta-G solvation = -16425.514187 eV Core-core repulsion = 13507.172191 eV Total energy + Delta-G solvation = -2918.341996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48833 -38.37984 -37.47585 -36.06331 -34.38329 -32.58036 -31.55700 -30.55622 -27.93583 -24.25464 -23.70107 -22.21849 -20.42842 -19.12303 -18.65386 -17.09764 -16.41949 -15.96124 -15.74126 -14.90719 -14.68316 -14.48720 -14.10060 -14.07200 -13.74075 -13.26533 -13.05905 -12.58610 -12.35657 -12.34716 -12.16244 -11.92060 -11.06868 -10.89402 -10.81069 -10.01408 -9.54893 -9.41171 -9.37541 -8.94626 -8.82022 -8.23893 -6.25022 -4.28232 0.34498 0.71998 2.44671 2.46662 3.24098 3.28928 3.31229 3.38497 3.57970 3.72258 3.77698 4.00163 4.29883 4.47164 4.55895 5.00221 5.09174 5.10227 5.32222 5.48698 5.61248 5.86773 5.99878 6.23919 6.73882 7.00424 7.08874 7.27908 7.31499 7.54116 8.04548 8.40808 8.67828 8.79366 9.34089 10.86808 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.005755 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.957172 B = 4863.938801 C = 5953.192442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.257 3.743 3 C -0.049 4.049 4 C -0.036 4.036 5 C -0.158 4.158 6 C 0.197 3.803 7 O -0.474 6.474 8 C -0.155 4.155 9 C 0.542 3.458 10 O -0.535 6.535 11 N -0.699 5.699 12 C 0.221 3.779 13 C -0.547 4.547 14 H 0.080 0.920 15 C 0.078 3.922 16 N -0.891 5.891 17 Si 0.877 3.123 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.260 1.260 21 C -0.022 4.022 22 H 0.140 0.860 23 H 0.145 0.855 24 H 0.401 0.599 25 H 0.395 0.605 26 H 0.028 0.972 27 H 0.024 0.976 28 H 0.268 0.732 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.045 -19.019 1.073 19.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.058 4.058 3 C -0.053 4.053 4 C -0.057 4.057 5 C -0.177 4.177 6 C 0.149 3.851 7 O -0.286 6.286 8 C -0.159 4.159 9 C 0.327 3.673 10 O -0.414 6.414 11 N -0.348 5.348 12 C 0.099 3.901 13 C -0.585 4.585 14 H 0.098 0.902 15 C -0.126 4.126 16 N -0.528 5.528 17 Si 0.704 3.296 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.185 1.185 21 C -0.043 4.043 22 H 0.157 0.843 23 H 0.163 0.837 24 H 0.261 0.739 25 H 0.230 0.770 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.093 -18.727 0.489 18.734 hybrid contribution 0.837 0.409 0.442 1.032 sum 0.930 -18.318 0.932 18.365 Atomic orbital electron populations 1.81275 1.11948 1.06913 1.08885 1.25548 0.92454 0.94075 0.93765 1.15852 0.84574 0.94554 1.10284 1.21135 0.93650 0.96775 0.94153 1.21343 0.93789 0.98192 1.04368 1.18745 0.84077 0.90483 0.91806 1.84686 1.14238 1.95904 1.33728 1.20621 0.93283 0.95012 1.06967 1.17938 0.87462 0.83372 0.78564 1.90775 1.12895 1.87294 1.50398 1.46178 1.10488 1.06313 1.71810 1.19547 0.93166 0.80348 0.97024 1.21070 0.94372 0.89422 1.53593 0.90236 1.24793 0.98233 0.95758 0.93784 1.69880 1.34580 0.99220 1.49100 0.86811 0.85382 0.78413 0.79042 1.19794 1.20884 1.18454 1.21398 0.92735 0.97605 0.92581 0.84255 0.83724 0.73944 0.77034 0.95395 0.95825 0.92191 0.83838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.64 18.54 41.84 0.78 -4.87 15 2 C 0.26 2.89 15.32 -22.47 -0.34 2.54 15 3 C -0.05 -0.47 5.73 -106.91 -0.61 -1.08 15 4 C -0.04 -0.27 9.73 -39.14 -0.38 -0.65 15 5 C -0.16 -1.25 9.96 -39.54 -0.39 -1.65 15 6 C 0.20 2.22 6.72 -38.55 -0.26 1.97 15 7 O -0.47 -5.69 11.55 -40.21 -0.46 -6.16 15 8 C -0.15 -2.06 5.88 -104.90 -0.62 -2.68 15 9 C 0.54 9.79 7.76 -12.45 -0.10 9.69 15 10 O -0.53 -11.33 15.15 -16.65 -0.25 -11.58 15 11 N -0.70 -13.52 5.50 -62.51 -0.34 -13.86 15 12 C 0.22 5.24 4.50 -5.19 -0.02 5.22 15 13 C -0.55 -14.64 9.83 -34.44 -0.34 -14.98 15 14 H 0.08 2.22 7.84 -52.49 -0.41 1.80 15 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 15 16 N -0.89 -26.12 13.96 55.43 0.77 -25.34 15 17 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 15 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 20 H -0.26 -6.13 6.54 56.52 0.37 -5.76 15 21 C -0.02 -0.24 9.23 -38.77 -0.36 -0.60 15 22 H 0.14 0.67 8.06 -52.49 -0.42 0.24 15 23 H 0.15 0.78 8.06 -52.49 -0.42 0.36 15 24 H 0.40 3.22 9.06 45.56 0.41 3.63 15 25 H 0.39 6.68 6.35 -40.82 -0.26 6.42 15 26 H 0.03 0.69 7.20 -51.93 -0.37 0.32 15 27 H 0.02 0.59 7.57 -51.93 -0.39 0.20 15 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 29 H 0.14 1.52 6.39 -52.49 -0.34 1.18 15 LS Contribution 271.88 15.07 4.10 4.10 Total: -1.00 -33.46 271.88 -4.98 -38.44 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -1.37 Total: 3.10 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -3.52 Total: -0.14 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 1.21 Total: -44.08 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.72 Total: -17.74 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.46 -4.98 -38.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140731758.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.469 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds