Wall clock time and date at job start Mon Mar 30 2020 03:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39995 * 120.00738 * 2.01515 * 3 2 1 5 5 C 1.37647 * 120.23960 * 179.72256 * 4 3 2 6 6 C 1.38921 * 120.24551 * 0.51830 * 5 4 3 7 7 O 1.35525 * 119.99958 * 179.76398 * 6 5 4 8 8 C 1.40319 * 120.00410 * 359.48433 * 6 5 4 9 9 C 1.47579 * 120.11620 * 180.27979 * 8 6 5 10 10 O 1.21585 * 119.99987 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99450 * 180.02562 * 9 8 6 12 12 C 1.46508 * 119.99533 * 179.97438 * 11 9 8 13 13 C 1.50704 * 109.46870 * 179.97438 * 12 11 9 14 14 H 1.07999 * 119.99690 * 0.02562 * 13 12 11 15 15 C 1.37869 * 119.99855 * 180.02562 * 13 12 11 16 16 N 1.31521 * 120.00262 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00230 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47148 * 89.99740 * 17 15 13 19 19 H 1.48500 * 109.47625 * 210.00082 * 17 15 13 20 20 H 1.48507 * 109.47146 * 330.00269 * 17 15 13 21 21 C 1.39317 * 120.00262 * 182.00119 * 3 2 1 22 22 H 1.07998 * 119.87793 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.88040 * 180.25685 * 5 4 3 24 24 H 0.96696 * 114.00027 * 269.72219 * 7 6 5 25 25 H 0.97002 * 120.00333 * 0.02562 * 11 9 8 26 26 H 1.08994 * 109.47256 * 300.00010 * 12 11 9 27 27 H 1.08998 * 109.46945 * 60.00493 * 12 11 9 28 28 H 0.96994 * 119.99722 * 180.02562 * 16 15 13 29 29 H 1.07991 * 120.12290 * 0.03480 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 -1.2106 -0.0426 5 6 4.6451 -1.2154 -0.0486 6 6 5.3492 -0.0187 -0.0015 7 8 6.7044 -0.0294 -0.0028 8 6 4.6573 1.2013 0.0415 9 6 5.4028 2.4742 0.0853 10 8 6.6187 2.4669 0.0847 11 7 4.7358 3.6446 0.1271 12 6 5.4759 4.9082 0.1712 13 6 4.5034 6.0587 0.2118 14 1 3.4404 5.8677 0.2058 15 6 4.9707 7.3550 0.2566 16 7 4.1220 8.3592 0.2925 17 14 6.8092 7.6854 0.2662 18 1 7.2949 7.8218 -1.1305 19 1 7.0827 8.9411 1.0102 20 1 7.5117 6.5558 0.9264 21 6 3.2641 1.2067 0.0421 22 1 2.7272 -2.1445 -0.0759 23 1 5.1797 -2.1530 -0.0857 24 1 7.0983 -0.0633 0.8797 25 1 3.7658 3.6503 0.1287 26 1 6.1035 4.9308 1.0620 27 1 6.1022 4.9936 -0.7168 28 1 4.4508 9.2711 0.3236 29 1 2.7257 2.1423 0.0754 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140731758.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:15 Heat of formation + Delta-G solvation = -47.738631 kcal Electronic energy + Delta-G solvation = -16426.588351 eV Core-core repulsion = 13507.172191 eV Total energy + Delta-G solvation = -2919.416160 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.51044 -39.66891 -38.37930 -36.99590 -36.12230 -34.47044 -32.63740 -31.40917 -29.75604 -25.45405 -24.57659 -23.82551 -21.78116 -20.37208 -19.51450 -18.80114 -17.61609 -17.32788 -16.65838 -16.44145 -16.03146 -15.92491 -15.32688 -15.05762 -14.70327 -14.61899 -14.21244 -14.14118 -14.09682 -13.41792 -13.06225 -12.99847 -12.85854 -12.68199 -11.92068 -11.82735 -11.64610 -10.92022 -10.79222 -10.26061 -9.94737 -9.72925 -8.39952 -6.47727 -0.47361 -0.12061 1.34432 1.36385 1.48648 1.55560 1.57277 2.15797 2.28338 2.35646 2.74757 2.78546 2.95905 3.19192 3.64360 3.74409 4.11753 4.22457 4.50834 4.69637 4.80082 4.86552 5.03161 5.11395 5.21796 5.26968 5.45949 5.53936 6.07184 6.40688 6.52769 6.77972 6.83001 7.14219 7.33349 8.74809 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.005755 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.957172 B = 4863.938801 C = 5953.192442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.281 3.719 3 C -0.051 4.051 4 C -0.007 4.007 5 C -0.141 4.141 6 C 0.196 3.804 7 O -0.492 6.492 8 C -0.181 4.181 9 C 0.543 3.457 10 O -0.571 6.571 11 N -0.704 5.704 12 C 0.233 3.767 13 C -0.549 4.549 14 H 0.057 0.943 15 C 0.025 3.975 16 N -0.932 5.932 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.256 1.256 21 C -0.018 4.018 22 H 0.179 0.821 23 H 0.181 0.819 24 H 0.415 0.585 25 H 0.405 0.595 26 H 0.019 0.981 27 H 0.014 0.986 28 H 0.272 0.728 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -21.733 1.039 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.033 4.033 3 C -0.055 4.055 4 C -0.027 4.027 5 C -0.159 4.159 6 C 0.148 3.852 7 O -0.307 6.307 8 C -0.185 4.185 9 C 0.331 3.669 10 O -0.452 6.452 11 N -0.354 5.354 12 C 0.110 3.890 13 C -0.587 4.587 14 H 0.075 0.925 15 C -0.175 4.175 16 N -0.571 5.571 17 Si 0.763 3.237 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.180 1.180 21 C -0.039 4.039 22 H 0.196 0.804 23 H 0.199 0.801 24 H 0.277 0.723 25 H 0.241 0.759 26 H 0.037 0.963 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.757 -21.470 0.464 21.489 hybrid contribution 0.574 1.138 0.455 1.353 sum 1.331 -20.333 0.920 20.397 Atomic orbital electron populations 1.81311 1.13261 1.08288 1.10590 1.25647 0.92462 0.92782 0.92427 1.15827 0.83614 0.94919 1.11120 1.21574 0.93509 0.97195 0.90430 1.21615 0.93772 0.98019 1.02484 1.19017 0.83986 0.90843 0.91339 1.84636 1.14851 1.95956 1.35236 1.20212 0.93761 0.93264 1.11267 1.18582 0.87303 0.84264 0.76770 1.90740 1.14556 1.87972 1.51917 1.46017 1.10922 1.05677 1.72803 1.19130 0.92468 0.81426 0.96025 1.21296 0.94025 0.90658 1.52734 0.92468 1.25628 1.02710 0.95648 0.93498 1.69991 1.36709 0.99814 1.50586 0.85827 0.79953 0.78537 0.79401 1.19081 1.19934 1.17977 1.21305 0.91941 0.98403 0.92301 0.80374 0.80128 0.72270 0.75875 0.96305 0.96806 0.91850 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.90 18.54 19.00 0.35 -11.55 15 2 C 0.28 5.74 15.32 88.33 1.35 7.09 15 3 C -0.05 -0.83 5.73 -21.35 -0.12 -0.96 15 4 C -0.01 -0.07 9.73 22.56 0.22 0.15 15 5 C -0.14 -1.56 9.96 22.29 0.22 -1.34 15 6 C 0.20 3.93 6.72 22.94 0.15 4.09 15 7 O -0.49 -10.93 11.55 -67.30 -0.78 -11.71 15 8 C -0.18 -4.62 5.88 -20.04 -0.12 -4.74 15 9 C 0.54 19.68 7.76 86.71 0.67 20.35 15 10 O -0.57 -24.33 15.15 17.00 0.26 -24.07 15 11 N -0.70 -27.73 5.50 -469.95 -2.58 -30.32 15 12 C 0.23 11.23 4.50 85.63 0.38 11.62 15 13 C -0.55 -30.13 9.83 25.60 0.25 -29.88 15 14 H 0.06 3.31 7.84 -2.91 -0.02 3.28 15 15 C 0.03 1.43 5.47 84.65 0.46 1.89 15 16 N -0.93 -55.67 13.96 21.45 0.30 -55.37 15 17 Si 0.94 43.55 27.47 68.60 1.88 45.44 15 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 20 H -0.26 -11.58 6.54 99.48 0.65 -10.93 15 21 C -0.02 -0.38 9.23 22.79 0.21 -0.17 15 22 H 0.18 0.53 8.06 -2.91 -0.02 0.51 15 23 H 0.18 0.82 8.06 -2.91 -0.02 0.80 15 24 H 0.42 6.04 9.06 -74.06 -0.67 5.37 15 25 H 0.40 14.08 6.35 -92.71 -0.59 13.49 15 26 H 0.02 0.95 7.20 -2.39 -0.02 0.93 15 27 H 0.01 0.70 7.57 -2.39 -0.02 0.68 15 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 29 H 0.14 2.93 6.39 -2.91 -0.02 2.92 15 Total: -1.00 -73.85 271.88 3.04 -70.82 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -0.09 Total: 8.64 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 3.69 Total: 8.12 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -1.93 Total: -97.23 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.52 Total: -35.78 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.44 kcal Total: -73.85 3.04 -70.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140731758.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.078 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds