Wall clock time and date at job start Mon Mar 30 2020 03:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 13 13 C 1.38766 * 119.75154 * 279.72132 * 12 9 7 14 14 C 1.37915 * 120.67367 * 179.78662 * 13 12 9 15 15 C 1.38908 * 119.81778 * 0.46365 * 14 13 12 16 16 O 1.35006 * 120.78853 * 179.79093 * 15 14 13 17 17 C 1.34200 * 121.47352 * 179.97438 * 16 15 14 18 18 O 1.21775 * 119.16440 * 180.02562 * 17 16 15 19 19 C 1.41182 * 121.67941 * 0.02562 * 17 16 15 20 20 C 1.35708 * 119.80096 * 359.97438 * 19 17 16 21 21 C 1.40575 * 119.34733 * 359.78919 * 15 14 13 22 22 C 1.36661 * 119.76136 * 99.99677 * 12 9 7 23 23 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 24 24 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 25 25 H 1.07999 * 119.66167 * 0.02562 * 13 12 9 26 26 H 1.07998 * 120.08687 * 180.26087 * 14 13 12 27 27 H 1.08001 * 120.10275 * 179.97438 * 19 17 16 28 28 H 1.07999 * 120.91903 * 180.02562 * 20 19 17 29 29 H 1.08005 * 120.13263 * 359.94912 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2303 -3.6446 -0.0015 13 6 2.8333 -4.0352 -1.1886 14 6 3.7356 -5.0781 -1.2095 15 6 4.0389 -5.7527 -0.0337 16 8 4.9161 -6.7790 -0.0324 17 6 5.2195 -7.4399 1.0955 18 8 6.0169 -8.3590 1.0484 19 6 4.6379 -7.0967 2.3353 20 6 3.7481 -6.0742 2.4028 21 6 3.4221 -5.3575 1.1661 22 6 2.5137 -4.2945 1.1668 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9223 -2.5282 -1.9998 25 1 2.5966 -3.5148 -2.1049 26 1 4.2025 -5.3715 -2.1381 27 1 4.9002 -7.6461 3.2273 28 1 3.2926 -5.7961 3.3417 29 1 2.0383 -3.9880 2.0869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000141970670.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:36 Heat of formation + Delta-G solvation = -107.634325 kcal Electronic energy + Delta-G solvation = -16891.260648 eV Core-core repulsion = 13936.954465 eV Total energy + Delta-G solvation = -2954.306183 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.93561 -40.33503 -38.80716 -37.38140 -35.49993 -34.31916 -32.32246 -31.10030 -28.23021 -25.74410 -25.47608 -24.03797 -23.46622 -20.37314 -19.40889 -18.98799 -18.49263 -17.87989 -17.33852 -16.50362 -16.10712 -15.75140 -15.37995 -15.04190 -14.95236 -14.66174 -14.43731 -14.17085 -13.82199 -13.55213 -13.08098 -12.62271 -12.49809 -12.22108 -11.94753 -11.69487 -11.43054 -11.35315 -10.65398 -10.32675 -9.74882 -9.37484 -8.58453 -6.47140 -0.80218 0.01292 0.53361 1.31689 1.56988 1.62008 1.78066 1.82019 2.55116 2.70323 3.06932 3.16390 3.39005 3.43138 3.78467 4.04193 4.08240 4.20513 4.23240 4.53315 4.61990 4.71201 4.90217 5.01904 5.08646 5.16401 5.54794 5.65903 5.82434 6.04910 6.13462 6.34388 6.56984 7.10827 7.46939 8.77506 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039109 B = 0.005421 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.779954 B = 5163.723318 C = 5272.735178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 1.110 2.890 4 H -0.288 1.288 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.646 4.646 8 H 0.050 0.950 9 C 0.245 3.755 10 H 0.041 0.959 11 O -0.588 6.588 12 C -0.108 4.108 13 C -0.057 4.057 14 C -0.130 4.130 15 C 0.111 3.889 16 O -0.284 6.284 17 C 0.500 3.500 18 O -0.515 6.515 19 C -0.260 4.260 20 C 0.031 3.969 21 C -0.163 4.163 22 C -0.057 4.057 23 H 0.271 0.729 24 H 0.367 0.633 25 H 0.147 0.853 26 H 0.162 0.838 27 H 0.190 0.810 28 H 0.194 0.806 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.279 -8.736 3.048 11.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.214 4.214 3 Si 0.933 3.067 4 H -0.213 1.213 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.069 0.931 9 C 0.188 3.812 10 H 0.058 0.942 11 O -0.395 6.395 12 C -0.109 4.109 13 C -0.074 4.074 14 C -0.148 4.148 15 C 0.067 3.933 16 O -0.196 6.196 17 C 0.353 3.647 18 O -0.408 6.408 19 C -0.279 4.279 20 C 0.013 3.987 21 C -0.164 4.164 22 C -0.075 4.075 23 H 0.081 0.919 24 H 0.214 0.786 25 H 0.164 0.836 26 H 0.179 0.821 27 H 0.207 0.793 28 H 0.211 0.789 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.064 -7.664 3.305 10.317 hybrid contribution 0.436 -1.565 -0.398 1.672 sum 6.500 -9.229 2.907 11.657 Atomic orbital electron populations 1.70789 1.07990 1.31461 1.45151 1.27141 0.96409 1.06074 0.91738 0.83014 0.74160 0.71643 0.77915 1.21329 1.19710 1.19566 1.22646 0.94492 0.92734 1.58499 0.93147 1.18454 0.87199 0.90138 0.85376 0.94175 1.86492 1.39667 1.96502 1.16799 1.20701 0.98935 0.96935 0.94302 1.21104 0.93242 0.94309 0.98790 1.20686 1.00510 0.96609 0.96993 1.19264 0.90741 0.87773 0.95479 1.83448 1.54288 1.41497 1.40322 1.19850 0.80999 0.80609 0.83279 1.90924 1.35440 1.28642 1.85796 1.22656 1.03680 1.03829 0.97744 1.23257 0.89597 0.88381 0.97479 1.19305 1.02552 1.00949 0.93552 1.20885 0.95283 0.92384 0.98954 0.91881 0.78551 0.83583 0.82084 0.79323 0.78903 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.97 13.53 21.45 0.29 -52.68 15 2 C -0.01 -0.56 5.40 84.66 0.46 -0.10 15 3 Si 1.11 46.54 29.90 68.60 2.05 48.59 15 4 H -0.29 -12.30 7.11 99.48 0.71 -11.59 15 5 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 15 7 C -0.65 -32.57 8.74 25.60 0.22 -32.35 15 8 H 0.05 2.52 7.74 -2.91 -0.02 2.50 15 9 C 0.25 11.11 2.66 29.10 0.08 11.18 15 10 H 0.04 1.98 7.84 -2.39 -0.02 1.96 15 11 O -0.59 -26.84 11.86 -148.98 -1.77 -28.61 15 12 C -0.11 -3.91 4.88 -20.11 -0.10 -4.01 15 13 C -0.06 -1.77 9.29 22.32 0.21 -1.56 15 14 C -0.13 -3.64 10.01 22.35 0.22 -3.41 15 15 C 0.11 3.28 6.76 23.00 0.16 3.43 15 16 O -0.28 -8.82 9.82 15.09 0.15 -8.67 15 17 C 0.50 14.90 7.89 68.54 0.54 15.44 15 18 O -0.52 -18.32 17.91 19.03 0.34 -17.98 15 19 C -0.26 -5.50 9.94 22.41 0.22 -5.28 15 20 C 0.03 0.60 10.13 23.87 0.24 0.84 15 21 C -0.16 -4.41 5.87 -20.14 -0.12 -4.53 15 22 C -0.06 -1.75 9.39 22.28 0.21 -1.54 15 23 H 0.27 15.96 6.47 -92.71 -0.60 15.36 15 24 H 0.37 14.42 7.46 -74.06 -0.55 13.87 15 25 H 0.15 4.17 6.74 -2.91 -0.02 4.15 15 26 H 0.16 3.66 8.06 -2.91 -0.02 3.63 15 27 H 0.19 2.84 8.06 -2.91 -0.02 2.82 15 28 H 0.19 2.11 8.06 -2.91 -0.02 2.09 15 29 H 0.15 4.04 8.01 -2.91 -0.02 4.02 15 Total: -1.00 -66.44 263.73 4.22 -62.22 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.81 Total: 19.02 kcal Atomic # 6 Polarization: -24.24 SS G_CDS: 2.34 Total: -21.89 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.29 Total: -52.68 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.28 Total: -55.25 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.05 Total: 48.59 kcal Total: -66.44 4.22 -62.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141970670.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.410 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds