Wall clock time and date at job start Mon Mar 30 2020 03:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38663 * 119.78875 * 2 1 4 4 C 1.38084 * 120.65511 * 180.02562 * 3 2 1 5 5 C 1.38634 * 119.76365 * 359.97438 * 4 3 2 6 6 N 1.38737 * 121.60186 * 179.97438 * 5 4 3 7 7 H 0.96996 * 119.68460 * 0.02562 * 6 5 4 8 8 C 1.34422 * 120.61864 * 179.77155 * 6 5 4 9 9 O 1.21563 * 118.59142 * 180.25218 * 8 6 5 10 10 N 1.34219 * 122.80813 * 0.52473 * 8 6 5 11 11 C 1.37316 * 119.35734 * 179.74737 * 10 8 6 12 12 H 1.08001 * 120.00050 * 318.20062 * 11 10 8 13 13 C 1.38984 * 119.99667 * 138.20929 * 11 10 8 14 14 N 1.31332 * 120.00190 * 340.17916 * 13 11 10 15 15 Si 1.86801 * 120.00088 * 160.46130 * 13 11 10 16 16 H 1.48501 * 109.47476 * 179.71837 * 15 13 11 17 17 H 1.48496 * 109.47106 * 299.72047 * 15 13 11 18 18 H 1.48501 * 109.46910 * 59.71852 * 15 13 11 19 19 C 1.35063 * 121.27501 * 359.47083 * 10 8 6 20 20 O 1.21618 * 120.85375 * 180.23701 * 19 10 8 21 21 C 1.40621 * 119.63801 * 0.02562 * 5 4 3 22 22 C 1.37892 * 119.78861 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.46869 * 89.99881 * 1 2 3 24 24 H 1.09002 * 109.46906 * 210.00492 * 1 2 3 25 25 H 1.09001 * 109.46956 * 329.99932 * 1 2 3 26 26 H 1.08000 * 119.67534 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.11622 * 180.02562 * 4 3 2 28 28 H 0.97002 * 120.00333 * 180.02562 * 14 13 11 29 29 H 1.08000 * 120.25013 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2034 0.0000 4 6 3.5766 1.2243 -0.0005 5 6 4.2830 0.0314 -0.0005 6 7 5.6701 0.0078 -0.0016 7 1 6.1647 0.8422 -0.0020 8 6 6.3350 -1.1604 0.0030 9 8 7.5505 -1.1380 0.0066 10 7 5.7144 -2.3505 -0.0015 11 6 6.4643 -3.5008 -0.0015 12 1 7.3453 -3.5711 -0.6223 13 6 6.0893 -4.5747 0.7971 14 7 5.2852 -4.3846 1.8180 15 14 6.7353 -6.2871 0.4233 16 1 6.1963 -7.2479 1.4191 17 1 6.3046 -6.6921 -0.9389 18 1 8.2187 -6.2825 0.4925 19 6 4.3666 -2.4384 -0.0004 20 8 3.8122 -3.5208 -0.0002 21 6 3.5856 -1.1897 -0.0005 22 6 2.1921 -1.1967 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6472 2.1336 -0.0004 27 1 4.1043 2.1666 -0.0001 28 1 5.0238 -5.1340 2.3756 29 1 1.6527 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144411421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:23 Heat of formation + Delta-G solvation = -26.590870 kcal Electronic energy + Delta-G solvation = -17631.778443 eV Core-core repulsion = 14713.279318 eV Total energy + Delta-G solvation = -2918.499124 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03946 -38.50991 -37.48873 -35.10334 -33.94189 -32.00115 -31.09895 -30.63162 -26.17188 -25.83863 -23.36966 -22.15119 -21.66327 -19.25255 -18.24045 -17.10443 -16.60744 -15.68276 -15.06387 -14.65955 -14.45120 -14.42597 -13.79923 -13.57432 -13.42863 -13.01853 -12.81988 -12.29703 -12.08085 -11.68019 -11.56009 -11.02544 -10.95970 -10.84318 -10.41642 -10.14504 -9.63426 -9.19952 -8.81653 -8.70731 -7.93584 -7.53166 -6.44563 -4.24024 1.28056 1.56753 3.20810 3.23808 3.26606 3.29874 3.41595 3.69592 4.12782 4.49384 4.75367 4.94007 4.99538 5.10106 5.28104 5.33589 5.52731 5.69195 5.71876 5.92005 6.14105 6.19289 6.28903 6.38301 6.75574 6.99239 7.19222 7.32972 7.48429 7.95581 8.27518 8.73250 8.97752 9.25540 9.69921 10.66213 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029917 B = 0.008515 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.689081 B = 3287.698662 C = 4078.750909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.139 4.139 3 C -0.069 4.069 4 C -0.172 4.172 5 C 0.189 3.811 6 N -0.654 5.654 7 H 0.418 0.582 8 C 0.664 3.336 9 O -0.565 6.565 10 N -0.383 5.383 11 C -0.353 4.353 12 H 0.103 0.897 13 C 0.073 3.927 14 N -0.827 5.827 15 Si 0.934 3.066 16 H -0.282 1.282 17 H -0.268 1.268 18 H -0.271 1.271 19 C 0.527 3.473 20 O -0.481 6.481 21 C -0.170 4.170 22 C -0.023 4.023 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.274 0.726 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 9.945 -2.615 13.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.088 4.088 4 C -0.194 4.194 5 C 0.086 3.914 6 N -0.299 5.299 7 H 0.257 0.743 8 C 0.369 3.631 9 O -0.442 6.442 10 N -0.114 5.114 11 C -0.479 4.479 12 H 0.121 0.879 13 C -0.140 4.140 14 N -0.458 5.458 15 Si 0.759 3.241 16 H -0.207 1.207 17 H -0.193 1.193 18 H -0.196 1.196 19 C 0.318 3.682 20 O -0.354 6.354 21 C -0.177 4.177 22 C -0.042 4.042 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.769 9.030 -2.438 12.159 hybrid contribution 0.471 -0.210 0.091 0.524 sum -7.298 8.820 -2.348 11.686 Atomic orbital electron populations 1.20673 0.91059 1.02474 1.01911 1.19722 0.96129 0.92678 1.05562 1.20853 0.93090 0.97420 0.97439 1.20456 0.94347 0.95582 1.08970 1.18072 0.83176 0.94282 0.95827 1.43031 1.04497 1.09328 1.73076 0.74350 1.16484 0.85978 0.80690 0.79995 1.90850 1.11473 1.85708 1.56159 1.41730 1.06237 1.04869 1.58525 1.19320 1.12335 0.88418 1.27778 0.87899 1.25368 0.95204 1.00765 0.92631 1.69856 1.30681 1.33050 1.12213 0.85914 0.78779 0.80628 0.78761 1.20732 1.19338 1.19620 1.18060 0.82034 0.88224 0.79843 1.90637 1.69739 1.29150 1.45903 1.19984 0.94894 0.92242 1.10576 1.20834 0.91617 0.98226 0.93568 0.91649 0.91646 0.91927 0.85740 0.85350 0.91570 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.08 10.00 36.01 0.36 -0.72 15 2 C -0.14 -1.94 5.88 -104.59 -0.61 -2.55 15 3 C -0.07 -0.86 9.67 -39.48 -0.38 -1.24 15 4 C -0.17 -2.36 9.94 -39.49 -0.39 -2.75 15 5 C 0.19 3.43 6.67 -83.69 -0.56 2.87 15 6 N -0.65 -12.56 5.35 -14.37 -0.08 -12.64 15 7 H 0.42 6.39 8.79 -40.82 -0.36 6.03 15 8 C 0.66 16.59 8.29 -87.73 -0.73 15.86 15 9 O -0.57 -15.37 16.85 5.31 0.09 -15.28 15 10 N -0.38 -10.56 2.63 -66.89 -0.18 -10.74 15 11 C -0.35 -10.32 8.52 -14.82 -0.13 -10.44 15 12 H 0.10 2.98 7.77 -52.49 -0.41 2.57 15 13 C 0.07 2.07 4.32 -17.49 -0.08 2.00 15 14 N -0.83 -24.39 11.58 55.50 0.64 -23.75 15 15 Si 0.93 21.86 29.59 -169.99 -5.03 16.83 15 16 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 19 C 0.53 13.89 6.92 -12.45 -0.09 13.80 15 20 O -0.48 -13.84 14.16 5.26 0.07 -13.77 15 21 C -0.17 -3.58 5.88 -104.91 -0.62 -4.19 15 22 C -0.02 -0.41 9.31 -39.30 -0.37 -0.77 15 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 15 25 H 0.06 0.53 8.08 -51.93 -0.42 0.12 15 26 H 0.12 1.13 8.06 -52.49 -0.42 0.71 15 27 H 0.13 1.33 8.06 -52.49 -0.42 0.91 15 28 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 29 H 0.14 2.41 7.80 -52.49 -0.41 2.00 15 LS Contribution 259.97 15.07 3.92 3.92 Total: -1.00 -34.55 259.97 -6.56 -41.11 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -2.42 Total: 2.47 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -3.59 Total: 11.85 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.39 Total: -47.13 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: 0.16 Total: -29.04 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.55 -6.56 -41.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144411421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.518 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds