Wall clock time and date at job start Mon Mar 30 2020 03:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38663 * 119.78875 * 2 1 4 4 C 1.38084 * 120.65511 * 180.02562 * 3 2 1 5 5 C 1.38634 * 119.76365 * 359.97438 * 4 3 2 6 6 N 1.38737 * 121.60186 * 179.97438 * 5 4 3 7 7 H 0.96996 * 119.68460 * 0.02562 * 6 5 4 8 8 C 1.34422 * 120.61864 * 179.77155 * 6 5 4 9 9 O 1.21563 * 118.59142 * 180.25218 * 8 6 5 10 10 N 1.34219 * 122.80813 * 0.52473 * 8 6 5 11 11 C 1.37316 * 119.35734 * 179.74737 * 10 8 6 12 12 H 1.08001 * 120.00050 * 318.20062 * 11 10 8 13 13 C 1.38984 * 119.99667 * 138.20929 * 11 10 8 14 14 N 1.31332 * 120.00190 * 340.17916 * 13 11 10 15 15 Si 1.86801 * 120.00088 * 160.46130 * 13 11 10 16 16 H 1.48501 * 109.47476 * 179.71837 * 15 13 11 17 17 H 1.48496 * 109.47106 * 299.72047 * 15 13 11 18 18 H 1.48501 * 109.46910 * 59.71852 * 15 13 11 19 19 C 1.35063 * 121.27501 * 359.47083 * 10 8 6 20 20 O 1.21618 * 120.85375 * 180.23701 * 19 10 8 21 21 C 1.40621 * 119.63801 * 0.02562 * 5 4 3 22 22 C 1.37892 * 119.78861 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.46869 * 89.99881 * 1 2 3 24 24 H 1.09002 * 109.46906 * 210.00492 * 1 2 3 25 25 H 1.09001 * 109.46956 * 329.99932 * 1 2 3 26 26 H 1.08000 * 119.67534 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.11622 * 180.02562 * 4 3 2 28 28 H 0.97002 * 120.00333 * 180.02562 * 14 13 11 29 29 H 1.08000 * 120.25013 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2034 0.0000 4 6 3.5766 1.2243 -0.0005 5 6 4.2830 0.0314 -0.0005 6 7 5.6701 0.0078 -0.0016 7 1 6.1647 0.8422 -0.0020 8 6 6.3350 -1.1604 0.0030 9 8 7.5505 -1.1380 0.0066 10 7 5.7144 -2.3505 -0.0015 11 6 6.4643 -3.5008 -0.0015 12 1 7.3453 -3.5711 -0.6223 13 6 6.0893 -4.5747 0.7971 14 7 5.2852 -4.3846 1.8180 15 14 6.7353 -6.2871 0.4233 16 1 6.1963 -7.2479 1.4191 17 1 6.3046 -6.6921 -0.9389 18 1 8.2187 -6.2825 0.4925 19 6 4.3666 -2.4384 -0.0004 20 8 3.8122 -3.5208 -0.0002 21 6 3.5856 -1.1897 -0.0005 22 6 2.1921 -1.1967 -0.0005 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6472 2.1336 -0.0004 27 1 4.1043 2.1666 -0.0001 28 1 5.0238 -5.1340 2.3756 29 1 1.6527 -2.1324 -0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144411421.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:22 Heat of formation + Delta-G solvation = -51.470214 kcal Electronic energy + Delta-G solvation = -17632.857292 eV Core-core repulsion = 14713.279318 eV Total energy + Delta-G solvation = -2919.577974 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.79850 -39.99520 -39.42566 -36.66337 -35.99245 -34.02986 -32.32938 -32.07829 -27.82222 -27.34873 -25.09954 -23.94079 -22.94281 -21.01539 -19.93866 -18.70122 -18.45546 -17.63157 -16.90232 -16.36552 -16.11764 -15.72236 -15.56012 -14.89088 -14.86195 -14.60716 -14.54120 -13.69961 -13.57481 -13.05420 -12.98329 -12.87704 -12.68631 -12.24161 -12.15453 -11.57442 -11.55602 -11.25994 -10.83469 -10.05178 -9.99552 -8.93533 -8.57073 -6.45939 -0.08899 0.27163 1.32016 1.36623 1.42421 1.45955 1.69813 2.20288 2.32342 2.65108 2.86931 3.24320 3.60324 3.74633 3.99609 4.26084 4.34317 4.58675 4.70175 4.97693 5.00523 5.03075 5.07114 5.26499 5.34178 5.47525 5.63486 5.78461 5.90454 5.96150 6.32838 6.66727 6.99182 7.25290 7.69115 8.55021 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029917 B = 0.008515 C = 0.006863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.689081 B = 3287.698662 C = 4078.750909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.123 4.123 3 C -0.046 4.046 4 C -0.149 4.149 5 C 0.170 3.830 6 N -0.634 5.634 7 H 0.438 0.562 8 C 0.661 3.339 9 O -0.601 6.601 10 N -0.407 5.407 11 C -0.391 4.391 12 H 0.090 0.910 13 C 0.028 3.972 14 N -0.865 5.865 15 Si 1.000 3.000 16 H -0.270 1.270 17 H -0.267 1.267 18 H -0.257 1.257 19 C 0.517 3.483 20 O -0.526 6.526 21 C -0.208 4.208 22 C -0.043 4.043 23 H 0.082 0.918 24 H 0.060 0.940 25 H 0.094 0.906 26 H 0.181 0.819 27 H 0.176 0.824 28 H 0.275 0.725 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.130 13.102 -2.844 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.065 4.065 4 C -0.169 4.169 5 C 0.069 3.931 6 N -0.281 5.281 7 H 0.280 0.720 8 C 0.365 3.635 9 O -0.480 6.480 10 N -0.137 5.137 11 C -0.516 4.516 12 H 0.108 0.892 13 C -0.181 4.181 14 N -0.497 5.497 15 Si 0.821 3.179 16 H -0.195 1.195 17 H -0.191 1.191 18 H -0.181 1.181 19 C 0.311 3.689 20 O -0.402 6.402 21 C -0.215 4.215 22 C -0.062 4.062 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.113 0.887 26 H 0.199 0.801 27 H 0.193 0.807 28 H 0.085 0.915 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.842 12.258 -2.670 15.946 hybrid contribution 0.906 -0.950 0.125 1.318 sum -8.937 11.309 -2.546 14.637 Atomic orbital electron populations 1.20792 0.88081 1.03883 1.03403 1.20207 0.98197 0.91635 1.02377 1.21533 0.92664 0.98789 0.93517 1.21013 0.94992 0.95243 1.05685 1.18355 0.82257 0.95034 0.97448 1.42606 1.05297 1.08071 1.72150 0.71980 1.16553 0.85762 0.81560 0.79660 1.90801 1.12854 1.86512 1.57877 1.41955 1.06985 1.05480 1.59329 1.19457 1.12956 0.90424 1.28795 0.89178 1.26372 0.95178 1.04562 0.91946 1.69938 1.32408 1.34058 1.13286 0.84947 0.78874 0.75463 0.78661 1.19461 1.19144 1.18110 1.18968 0.81882 0.89901 0.78198 1.90565 1.70362 1.31232 1.48047 1.19860 0.96001 0.90920 1.14682 1.20893 0.90405 0.99697 0.95243 0.89971 0.92130 0.88748 0.80144 0.80684 0.91527 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.00 71.24 0.71 -0.96 15 2 C -0.12 -2.92 5.88 -19.84 -0.12 -3.04 15 3 C -0.05 -0.85 9.67 22.33 0.22 -0.64 15 4 C -0.15 -3.27 9.94 22.33 0.22 -3.05 15 5 C 0.17 5.87 6.67 38.73 0.26 6.13 15 6 N -0.63 -24.00 5.35 -317.84 -1.70 -25.70 15 7 H 0.44 12.60 8.79 -92.71 -0.82 11.79 15 8 C 0.66 34.28 8.29 179.34 1.49 35.77 15 9 O -0.60 -34.04 16.85 -3.91 -0.07 -34.11 15 10 N -0.41 -23.73 2.63 -602.20 -1.58 -25.31 15 11 C -0.39 -24.26 8.52 84.01 0.72 -23.54 15 12 H 0.09 5.59 7.77 -2.91 -0.02 5.57 15 13 C 0.03 1.66 4.32 84.95 0.37 2.03 15 14 N -0.86 -53.70 11.58 21.66 0.25 -53.44 15 15 Si 1.00 46.65 29.59 68.60 2.03 48.68 15 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 18 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 19 C 0.52 28.80 6.92 86.58 0.60 29.40 15 20 O -0.53 -32.35 14.16 -4.09 -0.06 -32.40 15 21 C -0.21 -8.90 5.88 -20.05 -0.12 -9.02 15 22 C -0.04 -1.50 9.31 22.45 0.21 -1.29 15 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 15 24 H 0.06 1.06 8.08 -2.39 -0.02 1.04 15 25 H 0.09 0.98 8.08 -2.39 -0.02 0.96 15 26 H 0.18 1.53 8.06 -2.91 -0.02 1.51 15 27 H 0.18 2.31 8.06 -2.91 -0.02 2.29 15 28 H 0.28 16.00 8.31 -92.71 -0.77 15.23 15 29 H 0.12 4.47 7.80 -2.91 -0.02 4.44 15 Total: -1.00 -83.67 259.97 3.81 -79.86 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.39 Total: 10.64 kcal Atomic # 6 Polarization: 27.24 SS G_CDS: 4.55 Total: 31.79 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -3.03 Total: -104.46 kcal Atomic # 8 Polarization: -66.39 SS G_CDS: -0.12 Total: -66.51 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -83.67 3.81 -79.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144411421.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.390 kcal (2) G-P(sol) polarization free energy of solvation -83.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds