Wall clock time and date at job start Mon Mar 30 2020 03:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29905 * 124.84392 * 2 1 4 4 C 1.36090 * 108.80145 * 179.97438 * 3 2 1 5 5 C 1.39460 * 133.73440 * 180.02562 * 4 3 2 6 6 C 1.38507 * 119.66314 * 179.97438 * 5 4 3 7 7 N 1.39602 * 119.88201 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00423 * 33.56741 * 7 6 5 9 9 O 1.21764 * 119.99575 * 5.28009 * 8 7 6 10 10 C 1.46109 * 120.00377 * 185.28301 * 8 7 6 11 11 H 1.07998 * 119.99848 * 0.02562 * 10 8 7 12 12 C 1.40129 * 120.00267 * 180.02562 * 10 8 7 13 13 N 1.30640 * 119.99701 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 120.00376 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46848 * 89.99599 * 14 12 10 16 16 H 1.48491 * 109.47461 * 209.99989 * 14 12 10 17 17 H 1.48503 * 109.46997 * 330.00274 * 14 12 10 18 18 C 1.39482 * 120.23470 * 359.97438 * 6 5 4 19 19 C 1.37727 * 120.39839 * 0.02562 * 18 6 5 20 20 C 1.38790 * 119.98655 * 0.02562 * 19 18 6 21 21 O 1.34220 * 124.84009 * 179.97438 * 2 1 3 22 22 H 1.08996 * 109.47142 * 89.99774 * 1 2 3 23 23 H 1.09004 * 109.47269 * 210.00147 * 1 2 3 24 24 H 1.09005 * 109.46888 * 329.99910 * 1 2 3 25 25 H 1.08002 * 120.17134 * 359.97223 * 5 4 3 26 26 H 0.96998 * 119.99700 * 213.57401 * 7 6 5 27 27 H 0.97003 * 119.99866 * 179.97438 * 13 12 10 28 28 H 1.08001 * 119.79811 * 180.27380 * 18 6 5 29 29 H 1.08007 * 120.00739 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2492 1.0661 0.0000 4 6 3.5571 0.6901 0.0006 5 6 4.7622 1.3921 0.0013 6 6 5.9603 0.6971 0.0023 7 7 7.1692 1.3952 0.0036 8 6 7.2660 2.5743 0.6492 9 8 6.3298 2.9845 1.3111 10 6 8.4940 3.3604 0.5549 11 1 9.3241 2.9967 -0.0325 12 6 8.5947 4.5860 1.2266 13 7 7.5904 5.0261 1.9368 14 14 10.1650 5.5907 1.1066 15 1 10.0734 6.5157 -0.0514 16 1 10.3471 6.3755 2.3540 17 1 11.3228 4.6793 0.9218 18 6 5.9632 -0.6977 0.0031 19 6 4.7768 -1.3971 0.0024 20 6 3.5687 -0.7138 0.0004 21 8 2.2738 -1.1016 0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 4.7612 2.4721 0.0010 26 1 7.9396 1.0317 -0.4603 27 1 7.6602 5.8744 2.4021 28 1 6.9016 -1.2324 0.0084 29 1 4.7864 -2.4771 0.0035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153503706.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:04 Heat of formation + Delta-G solvation = -1.292513 kcal Electronic energy + Delta-G solvation = -16763.274440 eV Core-core repulsion = 13845.872335 eV Total energy + Delta-G solvation = -2917.402105 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.78505 -38.79720 -36.48527 -34.47783 -33.31089 -32.45496 -31.14114 -29.37626 -27.58693 -26.14319 -22.73824 -22.07979 -21.14690 -20.10922 -17.93120 -17.41661 -16.60443 -16.47615 -15.60663 -15.25817 -14.28931 -13.99315 -13.68011 -13.57859 -13.22795 -12.79945 -12.68986 -12.62470 -12.22260 -11.79811 -11.34318 -11.21259 -11.12413 -10.90516 -10.65738 -10.36469 -10.08216 -9.29945 -8.90294 -8.08858 -7.77276 -7.13746 -6.36754 -4.84807 1.10865 1.77250 2.76887 2.82285 3.06465 3.13323 3.16723 3.93212 4.06144 4.09733 4.47454 4.57437 4.97866 5.10728 5.28199 5.39088 5.50295 5.56668 5.60537 5.72919 5.84709 6.12155 6.50056 6.59146 6.78283 6.82072 7.01335 7.26754 7.67990 7.92540 8.02987 8.11915 8.82538 9.16650 10.35202 10.54183 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.044945 B = 0.005176 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.837017 B = 5408.725296 C = 5935.764160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.229 3.771 3 N -0.476 5.476 4 C 0.044 3.956 5 C -0.078 4.078 6 C 0.187 3.813 7 N -0.696 5.696 8 C 0.540 3.460 9 O -0.557 6.557 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.085 3.915 13 N -0.757 5.757 14 Si 0.914 3.086 15 H -0.270 1.270 16 H -0.278 1.278 17 H -0.263 1.263 18 C -0.134 4.134 19 C -0.079 4.079 20 C -0.034 4.034 21 O -0.223 6.223 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.102 0.898 25 H 0.151 0.849 26 H 0.396 0.604 27 H 0.273 0.727 28 H 0.137 0.863 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -10.421 -4.699 13.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.017 3.983 3 N -0.207 5.207 4 C -0.068 4.068 5 C -0.100 4.100 6 C 0.087 3.913 7 N -0.341 5.341 8 C 0.347 3.653 9 O -0.439 6.439 10 C -0.573 4.573 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.385 5.385 14 Si 0.738 3.262 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.188 1.188 18 C -0.155 4.155 19 C -0.099 4.099 20 C -0.083 4.083 21 O -0.116 6.116 22 H 0.112 0.888 23 H 0.107 0.893 24 H 0.120 0.880 25 H 0.168 0.832 26 H 0.230 0.770 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.395 -9.267 -4.075 12.537 hybrid contribution 1.423 -0.394 -0.195 1.489 sum -5.972 -9.662 -4.270 12.135 Atomic orbital electron populations 1.20306 0.81456 1.05144 1.04662 1.26309 0.96418 0.78764 0.96842 1.70585 1.01453 1.28939 1.19753 1.19635 0.91642 0.90904 1.04576 1.20398 0.87182 1.01729 1.00719 1.17621 0.87580 0.90116 0.95986 1.44164 1.09537 1.24170 1.56196 1.18435 0.89727 0.78412 0.78726 1.90675 1.40861 1.69245 1.43073 1.20825 0.99636 1.04271 1.32536 0.90873 1.25764 0.97256 0.97344 0.93254 1.69990 1.29726 1.17679 1.21098 0.86262 0.81780 0.79793 0.78356 1.19549 1.20293 1.18754 1.20813 0.97338 0.92669 1.04643 1.19428 0.87006 0.99256 1.04189 1.20190 0.83404 0.94582 1.10161 1.84377 1.15594 1.35953 1.75631 0.88829 0.89331 0.87983 0.83151 0.77029 0.91647 0.84547 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 36.01 0.38 -0.16 15 2 C 0.23 3.61 8.23 -13.09 -0.11 3.51 15 3 N -0.48 -9.52 11.34 -8.71 -0.10 -9.61 15 4 C 0.04 0.93 7.23 -84.71 -0.61 0.32 15 5 C -0.08 -1.80 8.69 -39.03 -0.34 -2.13 15 6 C 0.19 3.93 6.27 -83.76 -0.53 3.40 15 7 N -0.70 -15.30 5.32 -11.21 -0.06 -15.36 15 8 C 0.54 14.86 7.46 -13.10 -0.10 14.76 15 9 O -0.56 -17.51 12.70 5.13 0.07 -17.44 15 10 C -0.54 -14.47 9.53 -35.72 -0.34 -14.81 15 11 H 0.07 1.77 7.85 -52.49 -0.41 1.36 15 12 C 0.09 2.29 5.50 -17.35 -0.10 2.19 15 13 N -0.76 -22.02 11.82 55.55 0.66 -21.36 15 14 Si 0.91 19.38 29.56 -169.99 -5.02 14.35 15 15 H -0.27 -5.62 7.11 56.52 0.40 -5.22 15 16 H -0.28 -5.80 7.11 56.52 0.40 -5.39 15 17 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 18 C -0.13 -2.22 9.94 -39.30 -0.39 -2.62 15 19 C -0.08 -1.27 10.05 -39.56 -0.40 -1.66 15 20 C -0.03 -0.62 7.43 -38.57 -0.29 -0.91 15 21 O -0.22 -3.76 10.77 3.47 0.04 -3.72 15 22 H 0.09 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.09 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.15 3.98 6.41 -52.49 -0.34 3.65 15 26 H 0.40 7.20 8.79 -40.82 -0.36 6.84 15 27 H 0.27 7.18 8.29 -40.82 -0.34 6.85 15 28 H 0.14 1.80 8.06 -52.49 -0.42 1.38 15 29 H 0.13 1.60 8.06 -52.48 -0.42 1.18 15 LS Contribution 265.58 15.07 4.00 4.00 Total: -1.00 -35.13 265.58 -5.59 -40.73 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -2.36 Total: 6.52 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.82 Total: 1.89 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.50 Total: -46.34 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.10 Total: -21.16 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -35.13 -5.59 -40.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153503706.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.434 kcal (2) G-P(sol) polarization free energy of solvation -35.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds