Wall clock time and date at job start Mon Mar 30 2020 04:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47089 * 222.99180 * 3 2 1 5 5 C 1.36825 * 120.00042 * 84.11317 * 4 3 2 6 6 H 1.08004 * 119.99599 * 164.57027 * 5 4 3 7 7 C 1.39064 * 120.00235 * 344.57198 * 5 4 3 8 8 N 1.31355 * 119.99556 * 358.27812 * 7 5 4 9 9 Si 1.86791 * 120.00164 * 178.28131 * 7 5 4 10 10 H 1.48506 * 109.47144 * 89.99772 * 9 7 5 11 11 H 1.48504 * 109.47120 * 209.99774 * 9 7 5 12 12 H 1.48502 * 109.47474 * 329.99953 * 9 7 5 13 13 C 1.34774 * 119.99812 * 264.10908 * 4 3 2 14 14 O 1.21617 * 120.00323 * 185.10226 * 13 4 3 15 15 C 1.47579 * 120.00059 * 5.10719 * 13 4 3 16 16 N 1.32936 * 119.81093 * 77.71277 * 15 13 4 17 17 C 1.31365 * 121.70674 * 180.02562 * 16 15 13 18 18 C 1.38814 * 121.12471 * 359.97438 * 17 16 15 19 19 C 1.38247 * 119.49310 * 359.97438 * 18 17 16 20 20 C 1.39543 * 118.42979 * 0.02562 * 19 18 17 21 21 N 1.38867 * 120.56482 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47022 * 102.98699 * 3 2 1 23 23 H 1.09001 * 109.46906 * 342.99760 * 3 2 1 24 24 H 0.97007 * 119.99401 * 180.02562 * 8 7 5 25 25 H 1.07995 * 119.43876 * 179.71731 * 17 16 15 26 26 H 1.07994 * 120.25490 * 179.97438 * 18 17 16 27 27 H 1.08000 * 120.78424 * 180.02562 * 19 18 17 28 28 H 0.97001 * 120.00125 * 185.22906 * 21 20 19 29 29 H 0.96994 * 120.00221 * 5.22424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0111 0.9418 5 6 3.2094 0.7089 2.2714 6 1 3.7912 1.3451 2.9220 7 6 2.5759 -0.4175 2.7850 8 7 1.8407 -1.1724 2.0008 9 14 2.7702 -0.8568 4.5901 10 1 1.6968 -0.1993 5.3780 11 1 2.6735 -2.3295 4.7544 12 1 4.0949 -0.3908 5.0732 13 6 3.4328 2.2385 0.4985 14 8 3.9247 3.0470 1.2623 15 6 3.2049 2.6013 -0.9137 16 7 1.9812 2.9180 -1.3254 17 6 1.7361 3.2462 -2.5736 18 6 2.7510 3.2765 -3.5201 19 6 4.0423 2.9567 -3.1439 20 6 4.2802 2.6110 -1.8131 21 7 5.5602 2.2814 -1.3871 22 1 2.9712 0.2318 -1.0014 23 1 2.9717 -0.9819 0.3005 24 1 1.3985 -1.9579 2.3592 25 1 0.7271 3.4925 -2.8693 26 1 2.5336 3.5479 -4.5425 27 1 4.8479 2.9739 -3.8631 28 1 5.7041 1.9693 -0.4800 29 1 6.3103 2.3630 -1.9966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157682418.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:46 Heat of formation + Delta-G solvation = 49.774514 kcal Electronic energy + Delta-G solvation = -17566.759878 eV Core-core repulsion = 14683.864956 eV Total energy + Delta-G solvation = -2882.894922 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15482 -38.17048 -35.71767 -34.88675 -34.07329 -32.10129 -31.42559 -28.88012 -27.41478 -25.41558 -23.51507 -22.53206 -19.88744 -17.95903 -17.28556 -17.13007 -16.65677 -16.09388 -15.39950 -14.67840 -14.40938 -14.24687 -13.51579 -13.21312 -13.03280 -12.90170 -12.71022 -12.00878 -11.76515 -11.40762 -11.18470 -11.12041 -11.08367 -10.45956 -10.37768 -10.32871 -9.40028 -9.33908 -9.23922 -8.62496 -8.14611 -7.42547 -6.48168 -4.07390 1.39696 1.75122 3.06960 3.19612 3.24030 3.45632 3.84759 3.97444 4.13566 4.18535 4.39852 4.60474 4.91291 5.03337 5.21548 5.26754 5.37806 5.54288 5.73211 5.87537 6.10192 6.23823 6.38172 6.74292 6.81957 7.40450 7.50523 7.78481 7.87052 8.23342 8.43744 8.91856 9.08774 9.15117 9.65126 10.51662 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.008386 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.505296 B = 3338.022459 C = 3856.908035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.267 3.733 3 C 0.233 3.767 4 N -0.428 5.428 5 C -0.305 4.305 6 H 0.112 0.888 7 C 0.030 3.970 8 N -0.888 5.888 9 Si 0.941 3.059 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.508 3.492 14 O -0.567 6.567 15 C 0.042 3.958 16 N -0.413 5.413 17 C 0.035 3.965 18 C -0.121 4.121 19 C -0.166 4.166 20 C 0.197 3.803 21 N -0.858 5.858 22 H 0.066 0.934 23 H 0.134 0.866 24 H 0.276 0.724 25 H 0.151 0.849 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.408 0.592 29 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.094 1.784 -10.364 12.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.050 4.050 3 C 0.105 3.895 4 N -0.147 5.147 5 C -0.433 4.433 6 H 0.130 0.870 7 C -0.172 4.172 8 N -0.528 5.528 9 Si 0.767 3.233 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.192 1.192 13 C 0.295 3.705 14 O -0.449 6.449 15 C -0.104 4.104 16 N -0.123 5.123 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.197 4.197 20 C 0.086 3.914 21 N -0.396 5.396 22 H 0.084 0.916 23 H 0.152 0.848 24 H 0.087 0.913 25 H 0.168 0.832 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.238 0.762 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.881 1.968 -9.284 10.672 hybrid contribution 1.285 -0.393 0.230 1.364 sum 6.167 1.574 -9.054 11.067 Atomic orbital electron populations 1.80811 1.13577 1.10260 1.12142 1.28672 0.94888 0.91332 0.90149 1.18799 0.82583 0.96584 0.91486 1.43520 1.54762 1.08615 1.07765 1.19838 1.30280 1.09793 0.83346 0.87034 1.25378 0.94894 0.96139 1.00759 1.69571 1.30924 1.16786 1.35537 0.85684 0.79031 0.77482 0.81104 1.20265 1.20718 1.19208 1.17404 0.85094 0.82405 0.85579 1.90667 1.48468 1.49479 1.56256 1.20909 0.88610 1.05872 0.95027 1.67614 1.20476 1.06641 1.17568 1.22485 0.99487 1.02283 0.88432 1.21949 0.93015 0.98603 1.00603 1.20935 0.98029 1.06918 0.93799 1.18673 0.86659 0.93186 0.92850 1.42257 1.05112 1.74593 1.17615 0.91645 0.84845 0.91285 0.83196 0.85132 0.85086 0.76151 0.77391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.67 18.54 42.15 0.78 -11.89 15 2 C 0.27 6.54 12.98 -20.76 -0.27 6.27 15 3 C 0.23 5.08 5.09 -6.83 -0.03 5.05 15 4 N -0.43 -10.36 2.59 -119.12 -0.31 -10.67 15 5 C -0.31 -7.91 9.44 -15.02 -0.14 -8.05 15 6 H 0.11 2.98 7.24 -52.48 -0.38 2.60 15 7 C 0.03 0.75 5.34 -17.45 -0.09 0.66 15 8 N -0.89 -22.43 8.03 55.50 0.45 -21.98 15 9 Si 0.94 20.06 29.55 -169.99 -5.02 15.03 15 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 11 H -0.28 -5.88 7.11 56.52 0.40 -5.47 15 12 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 13 C 0.51 12.16 5.99 -12.45 -0.07 12.09 15 14 O -0.57 -15.20 16.73 5.26 0.09 -15.11 15 15 C 0.04 0.85 4.58 -82.85 -0.38 0.47 15 16 N -0.41 -8.45 10.29 -9.68 -0.10 -8.55 15 17 C 0.03 0.55 11.17 -17.54 -0.20 0.35 15 18 C -0.12 -1.53 10.10 -39.37 -0.40 -1.93 15 19 C -0.17 -2.14 10.04 -39.09 -0.39 -2.53 15 20 C 0.20 3.14 6.78 -83.45 -0.57 2.57 15 21 N -0.86 -11.40 8.98 32.63 0.29 -11.11 15 22 H 0.07 1.24 6.76 -51.93 -0.35 0.89 15 23 H 0.13 2.90 6.47 -51.93 -0.34 2.57 15 24 H 0.28 6.80 8.31 -40.82 -0.34 6.46 15 25 H 0.15 2.01 8.06 -52.49 -0.42 1.59 15 26 H 0.13 1.17 8.06 -52.49 -0.42 0.75 15 27 H 0.13 1.22 8.06 -52.49 -0.42 0.80 15 28 H 0.41 6.10 7.70 -40.82 -0.31 5.78 15 29 H 0.40 3.74 8.85 -40.82 -0.36 3.38 15 LS Contribution 267.07 15.07 4.02 4.02 Total: -1.00 -32.34 267.07 -4.49 -36.83 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.15 Total: 8.47 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: -2.55 Total: 14.96 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: 1.11 Total: -64.19 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.34 -4.49 -36.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157682418.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.603 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds