Wall clock time and date at job start Mon Mar 30 2020 04:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47089 * 222.99180 * 3 2 1 5 5 C 1.36825 * 120.00042 * 84.11317 * 4 3 2 6 6 H 1.08004 * 119.99599 * 164.57027 * 5 4 3 7 7 C 1.39064 * 120.00235 * 344.57198 * 5 4 3 8 8 N 1.31355 * 119.99556 * 358.27812 * 7 5 4 9 9 Si 1.86791 * 120.00164 * 178.28131 * 7 5 4 10 10 H 1.48506 * 109.47144 * 89.99772 * 9 7 5 11 11 H 1.48504 * 109.47120 * 209.99774 * 9 7 5 12 12 H 1.48502 * 109.47474 * 329.99953 * 9 7 5 13 13 C 1.34774 * 119.99812 * 264.10908 * 4 3 2 14 14 O 1.21617 * 120.00323 * 185.10226 * 13 4 3 15 15 C 1.47579 * 120.00059 * 5.10719 * 13 4 3 16 16 N 1.32936 * 119.81093 * 77.71277 * 15 13 4 17 17 C 1.31365 * 121.70674 * 180.02562 * 16 15 13 18 18 C 1.38814 * 121.12471 * 359.97438 * 17 16 15 19 19 C 1.38247 * 119.49310 * 359.97438 * 18 17 16 20 20 C 1.39543 * 118.42979 * 0.02562 * 19 18 17 21 21 N 1.38867 * 120.56482 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.47022 * 102.98699 * 3 2 1 23 23 H 1.09001 * 109.46906 * 342.99760 * 3 2 1 24 24 H 0.97007 * 119.99401 * 180.02562 * 8 7 5 25 25 H 1.07995 * 119.43876 * 179.71731 * 17 16 15 26 26 H 1.07994 * 120.25490 * 179.97438 * 18 17 16 27 27 H 1.08000 * 120.78424 * 180.02562 * 19 18 17 28 28 H 0.97001 * 120.00125 * 185.22906 * 21 20 19 29 29 H 0.96994 * 120.00221 * 5.22424 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.0111 0.9418 5 6 3.2094 0.7089 2.2714 6 1 3.7912 1.3451 2.9220 7 6 2.5759 -0.4175 2.7850 8 7 1.8407 -1.1724 2.0008 9 14 2.7702 -0.8568 4.5901 10 1 1.6968 -0.1993 5.3780 11 1 2.6735 -2.3295 4.7544 12 1 4.0949 -0.3908 5.0732 13 6 3.4328 2.2385 0.4985 14 8 3.9247 3.0470 1.2623 15 6 3.2049 2.6013 -0.9137 16 7 1.9812 2.9180 -1.3254 17 6 1.7361 3.2462 -2.5736 18 6 2.7510 3.2765 -3.5201 19 6 4.0423 2.9567 -3.1439 20 6 4.2802 2.6110 -1.8131 21 7 5.5602 2.2814 -1.3871 22 1 2.9712 0.2318 -1.0014 23 1 2.9717 -0.9819 0.3005 24 1 1.3985 -1.9579 2.3592 25 1 0.7271 3.4925 -2.8693 26 1 2.5336 3.5479 -4.5425 27 1 4.8479 2.9739 -3.8631 28 1 5.7041 1.9693 -0.4800 29 1 6.3103 2.3630 -1.9966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157682418.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:46 Heat of formation + Delta-G solvation = 25.524116 kcal Electronic energy + Delta-G solvation = -17567.811454 eV Core-core repulsion = 14683.864956 eV Total energy + Delta-G solvation = -2883.946498 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.54601 -39.80706 -37.61294 -36.11328 -35.99089 -33.84482 -32.78157 -30.13189 -29.23588 -27.12506 -24.97206 -23.71869 -21.48162 -19.87632 -18.69020 -18.51989 -17.91650 -17.80416 -17.01950 -16.17851 -15.89331 -15.67189 -14.91368 -14.84383 -14.76576 -14.60873 -13.93547 -13.66988 -13.34696 -13.19900 -12.97404 -12.96317 -12.35633 -12.29568 -12.20205 -12.08176 -11.19763 -10.96096 -10.43411 -10.15446 -10.05848 -8.60023 -8.39746 -6.05936 0.21051 0.62019 1.33336 1.43368 1.55888 1.71638 2.04692 2.29183 2.48820 2.86177 2.90537 3.01475 3.06756 3.66659 3.80843 4.01242 4.08093 4.28260 4.44571 4.60534 4.74693 4.96639 5.06710 5.30886 5.39999 5.74175 5.92624 6.31084 6.37219 6.87657 7.00510 7.15903 7.21877 7.26348 7.79680 8.57466 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.008386 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.505296 B = 3338.022459 C = 3856.908035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.277 3.723 3 C 0.241 3.759 4 N -0.438 5.438 5 C -0.333 4.333 6 H 0.092 0.908 7 C 0.000 4.000 8 N -0.900 5.900 9 Si 0.998 3.002 10 H -0.288 1.288 11 H -0.268 1.268 12 H -0.260 1.260 13 C 0.510 3.490 14 O -0.611 6.611 15 C -0.009 4.009 16 N -0.462 5.462 17 C 0.019 3.981 18 C -0.096 4.096 19 C -0.152 4.152 20 C 0.199 3.801 21 N -0.848 5.848 22 H 0.097 0.903 23 H 0.134 0.866 24 H 0.276 0.724 25 H 0.167 0.833 26 H 0.180 0.820 27 H 0.178 0.822 28 H 0.399 0.601 29 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 1.776 -12.824 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.203 5.203 2 C -0.040 4.040 3 C 0.115 3.885 4 N -0.156 5.156 5 C -0.461 4.461 6 H 0.110 0.890 7 C -0.200 4.200 8 N -0.540 5.540 9 Si 0.822 3.178 10 H -0.215 1.215 11 H -0.193 1.193 12 H -0.184 1.184 13 C 0.299 3.701 14 O -0.495 6.495 15 C -0.153 4.153 16 N -0.172 5.172 17 C -0.144 4.144 18 C -0.116 4.116 19 C -0.182 4.182 20 C 0.087 3.913 21 N -0.386 5.386 22 H 0.114 0.886 23 H 0.152 0.848 24 H 0.087 0.913 25 H 0.184 0.816 26 H 0.198 0.802 27 H 0.196 0.804 28 H 0.227 0.773 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 5.950 1.939 -11.771 13.331 hybrid contribution 0.969 -0.302 0.858 1.329 sum 6.919 1.637 -10.913 13.025 Atomic orbital electron populations 1.80788 1.14633 1.11477 1.13390 1.29202 0.95472 0.90229 0.89084 1.18891 0.81004 0.96037 0.92605 1.43653 1.54910 1.09497 1.07579 1.19827 1.31374 1.10375 0.84493 0.88972 1.26054 0.94225 0.95584 1.04158 1.69656 1.30952 1.16781 1.36638 0.84834 0.78718 0.77644 0.76597 1.21466 1.19304 1.18448 1.18089 0.83207 0.81542 0.87292 1.90604 1.50087 1.50550 1.58297 1.20293 0.90435 1.10900 0.93628 1.67403 1.21196 1.08355 1.20236 1.22957 1.01461 1.02293 0.87725 1.22443 0.91848 0.95291 1.01992 1.21484 0.99520 1.04457 0.92763 1.18782 0.86200 0.92686 0.93613 1.42251 1.05156 1.73628 1.17544 0.88566 0.84846 0.91314 0.81578 0.80221 0.80432 0.77259 0.75024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.45 18.54 20.01 0.37 -27.08 15 2 C 0.28 13.70 12.98 89.44 1.16 14.86 15 3 C 0.24 10.60 5.09 84.58 0.43 11.03 15 4 N -0.44 -21.78 2.59 -649.02 -1.68 -23.46 15 5 C -0.33 -17.83 9.44 84.11 0.79 -17.04 15 6 H 0.09 5.18 7.24 -2.91 -0.02 5.16 15 7 C 0.00 0.00 5.34 84.96 0.45 0.45 15 8 N -0.90 -45.80 8.03 21.68 0.17 -45.63 15 9 Si 1.00 41.49 29.55 68.60 2.03 43.51 15 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 15 11 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 12 H -0.26 -10.43 7.11 99.48 0.71 -9.73 15 13 C 0.51 25.12 5.99 86.71 0.52 25.64 15 14 O -0.61 -34.22 16.73 -4.08 -0.07 -34.29 15 15 C -0.01 -0.37 4.58 41.92 0.19 -0.18 15 16 N -0.46 -18.73 10.29 -184.54 -1.90 -20.63 15 17 C 0.02 0.55 11.17 84.90 0.95 1.50 15 18 C -0.10 -1.95 10.10 22.41 0.23 -1.73 15 19 C -0.15 -3.16 10.04 22.59 0.23 -2.94 15 20 C 0.20 5.91 6.78 38.82 0.26 6.17 15 21 N -0.85 -20.93 8.98 -50.68 -0.46 -21.39 15 22 H 0.10 3.60 6.76 -2.39 -0.02 3.58 15 23 H 0.13 5.84 6.47 -2.39 -0.02 5.82 15 24 H 0.28 13.61 8.31 -92.70 -0.77 12.84 15 25 H 0.17 4.10 8.06 -2.91 -0.02 4.08 15 26 H 0.18 1.94 8.06 -2.91 -0.02 1.92 15 27 H 0.18 2.07 8.06 -2.91 -0.02 2.04 15 28 H 0.40 11.79 7.70 -92.71 -0.71 11.07 15 29 H 0.42 6.56 8.85 -92.71 -0.82 5.74 15 Total: -1.00 -73.60 267.07 3.38 -70.22 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -0.31 Total: 20.96 kcal Atomic # 6 Polarization: 32.56 SS G_CDS: 5.22 Total: 37.78 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -3.49 Total: -138.18 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.07 Total: -34.29 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -73.60 3.38 -70.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157682418.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.746 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds