Wall clock time and date at job start Mon Mar 30 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46968 * 122.09085 * 3 2 1 5 5 C 1.36847 * 119.99734 * 272.55937 * 4 3 2 6 6 H 1.07998 * 119.99974 * 193.05667 * 5 4 3 7 7 C 1.39071 * 119.99847 * 13.05151 * 5 4 3 8 8 N 1.31348 * 120.00125 * 17.95879 * 7 5 4 9 9 Si 1.86794 * 119.99690 * 197.95631 * 7 5 4 10 10 H 1.48502 * 109.47360 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47359 * 120.00428 * 9 7 5 12 12 H 1.48503 * 109.47048 * 239.99901 * 9 7 5 13 13 C 1.34775 * 120.00548 * 92.55866 * 4 3 2 14 14 O 1.21607 * 120.00487 * 185.03912 * 13 4 3 15 15 C 1.47597 * 119.99528 * 5.04261 * 13 4 3 16 16 C 1.40061 * 120.98471 * 305.02883 * 15 13 4 17 17 C 1.37894 * 119.08424 * 179.97438 * 16 15 13 18 18 N 1.31962 * 121.13733 * 359.97438 * 17 16 15 19 19 C 1.31597 * 122.19698 * 0.02685 * 18 17 16 20 20 C 1.39153 * 120.76852 * 0.25000 * 19 18 17 21 21 N 1.38915 * 120.61142 * 179.74690 * 20 19 18 22 22 H 1.08997 * 109.47433 * 2.08366 * 3 2 1 23 23 H 1.09001 * 109.46632 * 242.08280 * 3 2 1 24 24 H 0.97000 * 120.00349 * 179.97438 * 8 7 5 25 25 H 1.08000 * 120.45306 * 359.96276 * 16 15 13 26 26 H 1.07998 * 119.43100 * 180.02562 * 17 16 15 27 27 H 1.07998 * 119.61443 * 179.97438 * 19 18 17 28 28 H 0.97007 * 119.99680 * 4.99055 * 21 20 19 29 29 H 0.96997 * 119.99930 * 184.98602 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7347 -1.1702 5 6 3.2745 0.0838 -2.3606 6 1 3.8257 0.5589 -3.1586 7 6 2.7460 -1.1897 -2.5429 8 7 1.7988 -1.6279 -1.7454 9 14 3.3832 -2.2767 -3.9218 10 1 4.4418 -1.5547 -4.6725 11 1 3.9466 -3.5251 -3.3479 12 1 2.2675 -2.6144 -4.8417 13 6 3.3692 2.0510 -1.0744 14 8 3.6860 2.6800 -2.0657 15 6 3.2839 2.7290 0.2338 16 6 2.1122 2.6744 0.9992 17 6 2.0757 3.3217 2.2162 18 7 3.1225 3.9870 2.6669 19 6 4.2466 4.0693 1.9876 20 6 4.3752 3.4529 0.7467 21 7 5.5616 3.5463 0.0300 22 1 2.9719 -1.0261 -0.0374 23 1 2.9711 0.4820 0.9081 24 1 1.4299 -2.5160 -1.8727 25 1 1.2491 2.1329 0.6410 26 1 1.1752 3.2829 2.8112 27 1 5.0774 4.6254 2.3960 28 1 6.3333 3.9823 0.4243 29 1 5.6183 3.1755 -0.8645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157942865.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:58 Heat of formation + Delta-G solvation = 47.501846 kcal Electronic energy + Delta-G solvation = -17530.844045 eV Core-core repulsion = 14647.850573 eV Total energy + Delta-G solvation = -2882.993472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22120 -38.34394 -36.01352 -34.75281 -34.27863 -32.41998 -31.28283 -28.76444 -27.55355 -25.55140 -23.56032 -22.53873 -19.90118 -18.11368 -17.34846 -16.90272 -16.67221 -16.24908 -15.43878 -14.59134 -14.45283 -14.18507 -13.87562 -13.70241 -13.29716 -12.91716 -12.71372 -12.09901 -11.70591 -11.48650 -11.31657 -11.24061 -11.07728 -10.62502 -10.50382 -10.43459 -9.50983 -9.42928 -9.17115 -8.67137 -8.25924 -7.43679 -6.64262 -4.13553 1.38360 1.66312 2.99884 3.13711 3.19476 3.46355 3.68403 3.97074 4.04070 4.07059 4.19719 4.62599 4.79642 4.85367 5.14125 5.25691 5.29557 5.46027 5.73840 5.94643 6.01178 6.18949 6.44763 6.48467 6.85344 7.31484 7.55077 7.69852 7.93481 8.12612 8.32174 8.77715 8.83401 9.02909 9.56030 10.39149 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.008430 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.686367 B = 3320.537025 C = 4044.937117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.256 3.744 3 C 0.220 3.780 4 N -0.426 5.426 5 C -0.312 4.312 6 H 0.113 0.887 7 C 0.032 3.968 8 N -0.876 5.876 9 Si 0.935 3.065 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.490 3.510 14 O -0.574 6.574 15 C -0.143 4.143 16 C -0.100 4.100 17 C 0.026 3.974 18 N -0.443 5.443 19 C 0.017 3.983 20 C 0.206 3.794 21 N -0.855 5.855 22 H 0.125 0.875 23 H 0.084 0.916 24 H 0.277 0.723 25 H 0.133 0.867 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.397 0.603 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.809 3.510 6.529 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.061 4.061 3 C 0.093 3.907 4 N -0.144 5.144 5 C -0.439 4.439 6 H 0.131 0.869 7 C -0.172 4.172 8 N -0.514 5.514 9 Si 0.761 3.239 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.207 1.207 13 C 0.279 3.721 14 O -0.458 6.458 15 C -0.159 4.159 16 C -0.122 4.122 17 C -0.131 4.131 18 N -0.151 5.151 19 C -0.148 4.148 20 C 0.095 3.905 21 N -0.394 5.394 22 H 0.143 0.857 23 H 0.102 0.898 24 H 0.088 0.912 25 H 0.151 0.849 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.225 0.775 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.102 3.998 6.811 9.402 hybrid contribution 0.792 -1.184 -1.725 2.237 sum 5.894 2.814 5.086 8.278 Atomic orbital electron populations 1.80905 1.13325 1.10946 1.10421 1.28877 0.95064 0.90969 0.91210 1.18827 0.82211 1.00902 0.88769 1.43574 1.55067 1.06086 1.09703 1.19860 1.33233 0.97952 0.92811 0.86919 1.25362 0.94599 0.98179 0.99049 1.69642 1.22750 1.19781 1.39264 0.85712 0.78930 0.79276 0.79957 1.18994 1.20278 1.20695 1.17672 0.85402 0.81751 0.87251 1.90644 1.53714 1.63981 1.37451 1.20065 0.94694 1.03516 0.97636 1.22299 0.97386 0.97990 0.94496 1.22207 0.97299 0.98566 0.95058 1.67246 0.99381 1.14498 1.34019 1.22161 0.97110 1.03549 0.91963 1.18789 0.86982 0.92607 0.92120 1.42379 1.10898 1.65793 1.20318 0.85707 0.89824 0.91179 0.84906 0.83109 0.83155 0.77486 0.75642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.22 18.51 42.16 0.78 -10.44 15 2 C 0.26 5.68 10.52 -20.76 -0.22 5.46 15 3 C 0.22 4.45 4.77 -6.83 -0.03 4.42 15 4 N -0.43 -9.79 2.58 -119.10 -0.31 -10.10 15 5 C -0.31 -7.76 9.40 -15.00 -0.14 -7.90 15 6 H 0.11 2.93 7.33 -52.49 -0.38 2.54 15 7 C 0.03 0.76 5.03 -17.45 -0.09 0.68 15 8 N -0.88 -21.38 8.69 55.50 0.48 -20.90 15 9 Si 0.94 19.04 29.59 -169.99 -5.03 14.01 15 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 11 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 13 C 0.49 11.03 6.55 -12.44 -0.08 10.95 15 14 O -0.57 -14.50 15.59 5.27 0.08 -14.42 15 15 C -0.14 -2.69 4.72 -104.49 -0.49 -3.19 15 16 C -0.10 -1.77 7.85 -39.02 -0.31 -2.08 15 17 C 0.03 0.41 11.15 -17.62 -0.20 0.21 15 18 N -0.44 -6.94 10.32 -13.13 -0.14 -7.07 15 19 C 0.02 0.24 11.06 -17.31 -0.19 0.05 15 20 C 0.21 3.30 6.80 -83.41 -0.57 2.73 15 21 N -0.86 -11.64 8.98 32.65 0.29 -11.35 15 22 H 0.13 2.54 6.59 -51.93 -0.34 2.20 15 23 H 0.08 1.44 5.90 -51.93 -0.31 1.13 15 24 H 0.28 6.55 8.31 -40.82 -0.34 6.21 15 25 H 0.13 2.51 5.37 -52.49 -0.28 2.22 15 26 H 0.15 1.98 8.06 -52.49 -0.42 1.56 15 27 H 0.15 1.65 8.06 -52.49 -0.42 1.23 15 28 H 0.40 3.84 8.85 -40.82 -0.36 3.48 15 29 H 0.41 6.45 7.00 -40.82 -0.29 6.16 15 LS Contribution 258.89 15.07 3.90 3.90 Total: -1.00 -29.68 258.89 -4.19 -33.87 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -1.94 Total: 11.15 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: -2.32 Total: 11.34 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 1.11 Total: -59.85 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.42 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.68 -4.19 -33.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157942865.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.371 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds