Wall clock time and date at job start Mon Mar 30 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46968 * 122.09085 * 3 2 1 5 5 C 1.36847 * 119.99734 * 272.55937 * 4 3 2 6 6 H 1.07998 * 119.99974 * 193.05667 * 5 4 3 7 7 C 1.39071 * 119.99847 * 13.05151 * 5 4 3 8 8 N 1.31348 * 120.00125 * 17.95879 * 7 5 4 9 9 Si 1.86794 * 119.99690 * 197.95631 * 7 5 4 10 10 H 1.48502 * 109.47360 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47359 * 120.00428 * 9 7 5 12 12 H 1.48503 * 109.47048 * 239.99901 * 9 7 5 13 13 C 1.34775 * 120.00548 * 92.55866 * 4 3 2 14 14 O 1.21607 * 120.00487 * 185.03912 * 13 4 3 15 15 C 1.47597 * 119.99528 * 5.04261 * 13 4 3 16 16 C 1.40061 * 120.98471 * 305.02883 * 15 13 4 17 17 C 1.37894 * 119.08424 * 179.97438 * 16 15 13 18 18 N 1.31962 * 121.13733 * 359.97438 * 17 16 15 19 19 C 1.31597 * 122.19698 * 0.02685 * 18 17 16 20 20 C 1.39153 * 120.76852 * 0.25000 * 19 18 17 21 21 N 1.38915 * 120.61142 * 179.74690 * 20 19 18 22 22 H 1.08997 * 109.47433 * 2.08366 * 3 2 1 23 23 H 1.09001 * 109.46632 * 242.08280 * 3 2 1 24 24 H 0.97000 * 120.00349 * 179.97438 * 8 7 5 25 25 H 1.08000 * 120.45306 * 359.96276 * 16 15 13 26 26 H 1.07998 * 119.43100 * 180.02562 * 17 16 15 27 27 H 1.07998 * 119.61443 * 179.97438 * 19 18 17 28 28 H 0.97007 * 119.99680 * 4.99055 * 21 20 19 29 29 H 0.96997 * 119.99930 * 184.98602 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7347 -1.1702 5 6 3.2745 0.0838 -2.3606 6 1 3.8257 0.5589 -3.1586 7 6 2.7460 -1.1897 -2.5429 8 7 1.7988 -1.6279 -1.7454 9 14 3.3832 -2.2767 -3.9218 10 1 4.4418 -1.5547 -4.6725 11 1 3.9466 -3.5251 -3.3479 12 1 2.2675 -2.6144 -4.8417 13 6 3.3692 2.0510 -1.0744 14 8 3.6860 2.6800 -2.0657 15 6 3.2839 2.7290 0.2338 16 6 2.1122 2.6744 0.9992 17 6 2.0757 3.3217 2.2162 18 7 3.1225 3.9870 2.6669 19 6 4.2466 4.0693 1.9876 20 6 4.3752 3.4529 0.7467 21 7 5.5616 3.5463 0.0300 22 1 2.9719 -1.0261 -0.0374 23 1 2.9711 0.4820 0.9081 24 1 1.4299 -2.5160 -1.8727 25 1 1.2491 2.1329 0.6410 26 1 1.1752 3.2829 2.8112 27 1 5.0774 4.6254 2.3960 28 1 6.3333 3.9823 0.4243 29 1 5.6183 3.1755 -0.8645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157942865.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:58 Heat of formation + Delta-G solvation = 26.420517 kcal Electronic energy + Delta-G solvation = -17531.758200 eV Core-core repulsion = 14647.850573 eV Total energy + Delta-G solvation = -2883.907627 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.64021 -39.91476 -37.76245 -36.24366 -35.85752 -34.10040 -32.79091 -29.98625 -29.27566 -27.24345 -25.02924 -23.82001 -21.46676 -19.91744 -18.75483 -18.29170 -18.13290 -17.79753 -17.01660 -16.17986 -15.78147 -15.74511 -15.33288 -15.12181 -14.81639 -14.45295 -14.37330 -13.85501 -13.42054 -13.10903 -12.94297 -12.82461 -12.38989 -12.27538 -12.25020 -12.07776 -11.22955 -11.01158 -10.52361 -10.23704 -10.09119 -8.62297 -8.47201 -6.04105 0.04448 0.41867 1.36025 1.45929 1.58814 1.78170 1.97830 2.25536 2.34062 2.86452 2.91837 2.93268 3.05423 3.55950 3.72791 3.78891 3.94213 4.11232 4.41876 4.49430 4.71229 4.82844 4.90003 5.18181 5.40598 5.64240 5.89529 6.27563 6.36299 6.89440 6.99020 7.03236 7.09851 7.23119 7.77787 8.54123 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.028928 B = 0.008430 C = 0.006921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.686367 B = 3320.537025 C = 4044.937117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.268 3.732 3 C 0.227 3.773 4 N -0.438 5.438 5 C -0.339 4.339 6 H 0.092 0.908 7 C 0.004 3.996 8 N -0.892 5.892 9 Si 0.996 3.004 10 H -0.267 1.267 11 H -0.262 1.262 12 H -0.288 1.288 13 C 0.491 3.509 14 O -0.611 6.611 15 C -0.173 4.173 16 C -0.106 4.106 17 C 0.028 3.972 18 N -0.445 5.445 19 C 0.034 3.966 20 C 0.209 3.791 21 N -0.844 5.844 22 H 0.124 0.876 23 H 0.116 0.884 24 H 0.278 0.722 25 H 0.116 0.884 26 H 0.175 0.825 27 H 0.193 0.807 28 H 0.417 0.583 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.007 3.943 7.936 11.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.049 4.049 3 C 0.100 3.900 4 N -0.155 5.155 5 C -0.466 4.466 6 H 0.110 0.890 7 C -0.198 4.198 8 N -0.531 5.531 9 Si 0.820 3.180 10 H -0.191 1.191 11 H -0.187 1.187 12 H -0.214 1.214 13 C 0.282 3.718 14 O -0.497 6.497 15 C -0.189 4.189 16 C -0.127 4.127 17 C -0.128 4.128 18 N -0.153 5.153 19 C -0.131 4.131 20 C 0.096 3.904 21 N -0.382 5.382 22 H 0.142 0.858 23 H 0.134 0.866 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.192 0.808 27 H 0.209 0.791 28 H 0.249 0.751 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.309 4.434 8.257 11.298 hybrid contribution 0.470 -1.206 -2.132 2.494 sum 6.779 3.228 6.125 9.690 Atomic orbital electron populations 1.80889 1.14261 1.12096 1.11450 1.29239 0.95444 0.89961 0.90267 1.18964 0.80977 1.00949 0.89119 1.43703 1.55337 1.06576 1.09912 1.19810 1.34353 0.98884 0.93602 0.88994 1.26025 0.94266 0.98573 1.00948 1.69721 1.23101 1.19957 1.40310 0.84822 0.77937 0.77963 0.77304 1.19149 1.18711 1.21449 1.18263 0.83721 0.81504 0.88334 1.90601 1.55028 1.64792 1.39284 1.19835 0.96725 1.05699 0.96663 1.22152 0.96452 0.98800 0.95309 1.22485 0.98236 0.97762 0.94321 1.67373 0.99682 1.14274 1.34014 1.22789 0.97659 1.02060 0.90637 1.18925 0.86818 0.91933 0.92771 1.42365 1.11051 1.65132 1.19670 0.85825 0.86607 0.91115 0.86651 0.80821 0.79064 0.75080 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.06 18.51 20.01 0.37 -23.69 15 2 C 0.27 11.91 10.52 89.44 0.94 12.85 15 3 C 0.23 9.13 4.77 84.57 0.40 9.53 15 4 N -0.44 -20.38 2.58 -648.98 -1.68 -22.05 15 5 C -0.34 -17.26 9.40 84.11 0.79 -16.46 15 6 H 0.09 4.97 7.33 -2.91 -0.02 4.94 15 7 C 0.00 0.19 5.03 84.97 0.43 0.62 15 8 N -0.89 -43.64 8.69 21.68 0.19 -43.45 15 9 Si 1.00 39.08 29.59 68.60 2.03 41.11 15 10 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 11 H -0.26 -9.63 7.11 99.48 0.71 -8.93 15 12 H -0.29 -11.61 7.11 99.48 0.71 -10.90 15 13 C 0.49 22.37 6.55 86.71 0.57 22.94 15 14 O -0.61 -31.61 15.59 -4.05 -0.06 -31.67 15 15 C -0.17 -6.37 4.72 -19.78 -0.09 -6.47 15 16 C -0.11 -3.62 7.85 22.63 0.18 -3.44 15 17 C 0.03 0.81 11.15 84.59 0.94 1.75 15 18 N -0.45 -12.41 10.32 -195.46 -2.02 -14.43 15 19 C 0.03 0.86 11.06 84.95 0.94 1.80 15 20 C 0.21 6.18 6.80 38.83 0.26 6.45 15 21 N -0.84 -21.20 8.98 -50.61 -0.45 -21.65 15 22 H 0.12 5.01 6.59 -2.39 -0.02 5.00 15 23 H 0.12 3.87 5.90 -2.39 -0.01 3.86 15 24 H 0.28 13.09 8.31 -92.71 -0.77 12.32 15 25 H 0.12 4.36 5.37 -2.91 -0.02 4.34 15 26 H 0.17 4.12 8.06 -2.91 -0.02 4.10 15 27 H 0.19 3.15 8.06 -2.91 -0.02 3.13 15 28 H 0.42 6.77 8.85 -92.70 -0.82 5.95 15 29 H 0.40 12.27 7.00 -92.71 -0.65 11.62 15 Total: -1.00 -64.09 258.89 3.51 -60.58 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.23 Total: 25.69 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: 5.36 Total: 29.56 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -3.59 Total: -125.28 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.06 Total: -31.67 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -64.09 3.51 -60.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157942865.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.003 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds