Wall clock time and date at job start Mon Mar 30 2020 03:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47370 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46893 * 300.00189 * 3 2 1 6 6 H 1.48495 * 109.47239 * 60.00157 * 3 2 1 7 7 C 1.37872 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00327 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00049 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40168 * 66.46228 * 9 7 2 11 11 O 1.42098 * 106.40146 * 293.54208 * 9 7 2 12 12 N 1.65601 * 107.21777 * 180.02562 * 9 7 2 13 13 C 1.46495 * 119.99953 * 65.00238 * 12 9 7 14 14 C 1.50709 * 109.47024 * 165.00025 * 13 12 9 15 15 C 1.29821 * 118.55623 * 95.01844 * 14 13 12 16 16 C 1.50142 * 123.28645 * 180.37145 * 15 14 13 17 17 N 1.46761 * 110.41820 * 343.08797 * 16 15 14 18 18 C 1.47239 * 110.25859 * 50.58732 * 17 16 15 19 19 C 1.50304 * 118.55054 * 274.99768 * 14 13 12 20 20 H 0.97001 * 120.00532 * 359.97438 * 1 2 3 21 21 H 0.97006 * 119.99930 * 244.99834 * 12 9 7 22 22 H 1.09000 * 109.47743 * 45.00097 * 13 12 9 23 23 H 1.09002 * 109.47034 * 284.99561 * 13 12 9 24 24 H 1.08006 * 118.35282 * 0.39861 * 15 14 13 25 25 H 1.08992 * 109.33312 * 103.19808 * 16 15 14 26 26 H 1.09005 * 109.33463 * 222.86605 * 16 15 14 27 27 H 1.00895 * 110.79905 * 287.30051 * 17 16 15 28 28 H 1.09002 * 109.63847 * 171.71936 * 18 17 16 29 29 H 1.08999 * 109.63658 * 51.31405 * 18 17 16 30 30 H 1.08999 * 109.43124 * 43.42688 * 19 14 13 31 31 H 1.09006 * 109.42944 * 283.57817 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9353 -0.0005 13 6 3.1394 -4.1087 1.1493 14 6 3.7948 -5.4639 1.0771 15 6 4.9709 -5.5563 0.5351 16 6 5.7166 -6.8525 0.4005 17 7 5.1433 -7.8679 1.2917 18 6 3.6843 -7.9422 1.1081 19 6 3.0582 -6.6488 1.6360 20 1 -0.4851 0.8400 0.0004 21 1 2.3173 -4.5325 -0.7619 22 1 2.5624 -4.0330 2.0709 23 1 3.9055 -3.3334 1.1355 24 1 5.4364 -4.6556 0.1629 25 1 5.6497 -7.2020 -0.6297 26 1 6.7633 -6.6954 0.6611 27 1 5.3773 -7.6736 2.2537 28 1 3.2883 -8.7936 1.6617 29 1 3.4537 -8.0550 0.0487 30 1 2.0125 -6.6019 1.3324 31 1 3.1201 -6.6339 2.7242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160519990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:44 Heat of formation + Delta-G solvation = -83.550102 kcal Electronic energy + Delta-G solvation = -16078.932784 eV Core-core repulsion = 13293.407673 eV Total energy + Delta-G solvation = -2785.525111 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.07459 -35.32387 -34.89467 -33.95219 -33.09419 -31.27514 -30.87785 -26.14829 -25.70117 -23.44336 -22.45991 -19.09525 -18.25512 -17.42191 -16.47407 -15.84404 -15.02241 -14.87065 -14.82960 -14.52837 -14.11914 -13.83636 -13.38480 -12.97922 -12.61492 -12.22354 -12.00838 -11.85015 -11.39455 -11.24597 -11.20309 -10.82396 -10.59861 -10.43596 -10.29483 -10.19699 -9.26849 -9.02843 -8.89058 -8.60098 -8.48099 -6.71130 -5.32935 1.99233 2.50492 3.04442 3.13063 3.20006 4.06105 4.16695 4.63215 4.75897 4.80835 4.91096 5.00562 5.10742 5.35450 5.56914 5.62871 5.67733 5.80412 5.84401 5.90774 5.99189 6.06142 6.47134 6.50862 6.78466 6.83537 6.97154 7.20426 7.31157 7.89208 7.97425 8.88175 10.23094 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.006148 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.835700 B = 4553.071707 C = 4962.808664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.715 3.285 10 O -1.007 7.007 11 O -1.007 7.007 12 N -1.132 6.132 13 C 0.160 3.840 14 C -0.119 4.119 15 C -0.189 4.189 16 C 0.085 3.915 17 N -0.683 5.683 18 C 0.054 3.946 19 C -0.125 4.125 20 H 0.290 0.710 21 H 0.402 0.598 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.341 0.659 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 -10.392 2.575 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.815 3.185 10 O -0.997 6.997 11 O -0.997 6.997 12 N -0.887 5.887 13 C 0.033 3.967 14 C -0.121 4.121 15 C -0.210 4.210 16 C -0.045 4.045 17 N -0.310 5.310 18 C -0.076 4.076 19 C -0.164 4.164 20 H 0.101 0.899 21 H 0.232 0.768 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.157 0.843 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.005 -10.873 2.328 14.309 hybrid contribution 0.693 2.015 0.070 2.132 sum 9.698 -8.858 2.398 13.352 Atomic orbital electron populations 1.69903 1.06782 1.30631 1.40180 1.24753 0.94465 1.00857 0.88503 0.86128 0.80394 0.80425 0.78565 1.18681 1.19599 1.19601 1.30572 1.06078 1.11914 1.66779 0.88019 1.00396 0.72075 0.73241 0.72801 1.93374 1.73072 1.87645 1.45625 1.93353 1.72900 1.87520 1.45963 1.56004 1.55576 1.51002 1.26075 1.20104 0.93377 0.93264 0.89964 1.21143 0.95246 0.96086 0.99595 1.22931 0.96863 1.00206 1.01030 1.20911 0.97840 0.87450 0.98287 1.61153 1.11044 1.48077 1.10736 1.22135 0.87294 0.96208 1.01954 1.21172 1.00932 0.93519 1.00752 0.89935 0.76795 0.90327 0.91841 0.86940 0.89898 0.90029 0.84270 0.90298 0.90656 0.89784 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.95 13.19 55.43 0.73 -24.22 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -1.02 -28.04 9.72 30.60 0.30 -27.74 16 8 H 0.10 2.56 7.81 -52.48 -0.41 2.15 16 9 S 2.72 71.85 5.02 -107.50 -0.54 71.31 16 10 O -1.01 -29.62 18.02 -57.17 -1.03 -30.65 16 11 O -1.01 -29.34 17.49 -57.17 -1.00 -30.34 16 12 N -1.13 -22.43 5.99 -11.65 -0.07 -22.50 16 13 C 0.16 2.73 6.27 -5.19 -0.03 2.69 16 14 C -0.12 -1.62 5.29 -100.92 -0.53 -2.15 16 15 C -0.19 -2.27 9.50 -35.96 -0.34 -2.62 16 16 C 0.08 0.84 6.74 -5.32 -0.04 0.81 16 17 N -0.68 -6.81 6.99 -115.16 -0.80 -7.62 16 18 C 0.05 0.55 6.64 -3.59 -0.02 0.53 16 19 C -0.13 -1.49 5.95 -28.03 -0.17 -1.66 16 20 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 21 H 0.40 7.07 8.65 -34.47 -0.30 6.77 16 22 H 0.08 1.41 7.73 -51.93 -0.40 1.01 16 23 H 0.06 1.04 7.85 -51.93 -0.41 0.64 16 24 H 0.11 1.35 7.81 -52.48 -0.41 0.94 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.34 3.06 8.78 -39.29 -0.34 2.72 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 278.85 15.07 4.20 4.20 Total: -1.00 -34.55 278.85 -8.41 -42.96 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -3.94 Total: 7.83 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -0.93 Total: -26.55 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.14 Total: -54.34 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -2.03 Total: -60.99 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 71.85 SS G_CDS: -0.54 Total: 71.31 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.55 -8.41 -42.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160519990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.593 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds