Wall clock time and date at job start Mon Mar 30 2020 03:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48500 * 109.47370 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46893 * 300.00189 * 3 2 1 6 6 H 1.48495 * 109.47239 * 60.00157 * 3 2 1 7 7 C 1.37872 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00327 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00049 * 359.97438 * 7 2 1 10 10 O 1.42101 * 106.40168 * 66.46228 * 9 7 2 11 11 O 1.42098 * 106.40146 * 293.54208 * 9 7 2 12 12 N 1.65601 * 107.21777 * 180.02562 * 9 7 2 13 13 C 1.46495 * 119.99953 * 65.00238 * 12 9 7 14 14 C 1.50709 * 109.47024 * 165.00025 * 13 12 9 15 15 C 1.29821 * 118.55623 * 95.01844 * 14 13 12 16 16 C 1.50142 * 123.28645 * 180.37145 * 15 14 13 17 17 N 1.46761 * 110.41820 * 343.08797 * 16 15 14 18 18 C 1.47239 * 110.25859 * 50.58732 * 17 16 15 19 19 C 1.50304 * 118.55054 * 274.99768 * 14 13 12 20 20 H 0.97001 * 120.00532 * 359.97438 * 1 2 3 21 21 H 0.97006 * 119.99930 * 244.99834 * 12 9 7 22 22 H 1.09000 * 109.47743 * 45.00097 * 13 12 9 23 23 H 1.09002 * 109.47034 * 284.99561 * 13 12 9 24 24 H 1.08006 * 118.35282 * 0.39861 * 15 14 13 25 25 H 1.08992 * 109.33312 * 103.19808 * 16 15 14 26 26 H 1.09005 * 109.33463 * 222.86605 * 16 15 14 27 27 H 1.00895 * 110.79905 * 287.30051 * 17 16 15 28 28 H 1.09002 * 109.63847 * 171.71936 * 18 17 16 29 29 H 1.08999 * 109.63658 * 51.31405 * 18 17 16 30 30 H 1.08999 * 109.43124 * 43.42688 * 19 14 13 31 31 H 1.09006 * 109.42944 * 283.57817 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9353 -0.0005 13 6 3.1394 -4.1087 1.1493 14 6 3.7948 -5.4639 1.0771 15 6 4.9709 -5.5563 0.5351 16 6 5.7166 -6.8525 0.4005 17 7 5.1433 -7.8679 1.2917 18 6 3.6843 -7.9422 1.1081 19 6 3.0582 -6.6488 1.6360 20 1 -0.4851 0.8400 0.0004 21 1 2.3173 -4.5325 -0.7619 22 1 2.5624 -4.0330 2.0709 23 1 3.9055 -3.3334 1.1355 24 1 5.4364 -4.6556 0.1629 25 1 5.6497 -7.2020 -0.6297 26 1 6.7633 -6.6954 0.6611 27 1 5.3773 -7.6736 2.2537 28 1 3.2883 -8.7936 1.6617 29 1 3.4537 -8.0550 0.0487 30 1 2.0125 -6.6019 1.3324 31 1 3.1201 -6.6339 2.7242 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160519990.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:43 Heat of formation + Delta-G solvation = -113.330466 kcal Electronic energy + Delta-G solvation = -16080.224157 eV Core-core repulsion = 13293.407673 eV Total energy + Delta-G solvation = -2786.816484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.02400 -37.44890 -36.33574 -36.16762 -35.19383 -32.48880 -31.75285 -28.28859 -26.93563 -24.36184 -23.44967 -21.10294 -19.47270 -19.18102 -18.27986 -17.53225 -16.79321 -16.10801 -16.04112 -15.72334 -15.65985 -15.29356 -14.94788 -14.13169 -14.01499 -13.54475 -13.35929 -13.29619 -13.07034 -13.03510 -12.54838 -12.46216 -12.31758 -12.29555 -12.15832 -11.69440 -11.28427 -11.03465 -10.24887 -9.90408 -9.41997 -8.77768 -7.51050 0.27355 1.16443 1.32280 1.34255 1.50933 2.19801 2.55900 3.04206 3.34602 3.66602 3.80345 3.83194 4.12524 4.25195 4.42084 4.48533 4.57365 4.66595 4.70698 4.76976 4.94446 4.98184 5.07426 5.10342 5.28171 5.51447 5.87078 5.92015 6.00805 6.33409 6.47450 6.75967 8.19133 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.038834 B = 0.006148 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.835700 B = 4553.071707 C = 4962.808664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.068 3.932 3 Si 0.993 3.007 4 H -0.247 1.247 5 H -0.260 1.260 6 H -0.259 1.259 7 C -1.039 5.039 8 H 0.120 0.880 9 S 2.720 3.280 10 O -1.045 7.045 11 O -1.044 7.044 12 N -1.116 6.116 13 C 0.153 3.847 14 C -0.139 4.139 15 C -0.167 4.167 16 C 0.085 3.915 17 N -0.682 5.682 18 C 0.059 3.941 19 C -0.124 4.124 20 H 0.299 0.701 21 H 0.413 0.587 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.115 0.885 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.348 0.652 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.528 -10.508 2.650 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.145 4.145 3 Si 0.811 3.189 4 H -0.170 1.170 5 H -0.184 1.184 6 H -0.183 1.183 7 C -1.173 5.173 8 H 0.138 0.862 9 S 2.821 3.179 10 O -1.036 7.036 11 O -1.033 7.033 12 N -0.875 5.875 13 C 0.027 3.973 14 C -0.141 4.141 15 C -0.188 4.188 16 C -0.045 4.045 17 N -0.310 5.310 18 C -0.070 4.070 19 C -0.163 4.163 20 H 0.109 0.891 21 H 0.246 0.754 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.133 0.867 25 H 0.107 0.893 26 H 0.122 0.878 27 H 0.166 0.834 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 11.520 -11.021 2.403 16.123 hybrid contribution -0.029 1.961 0.050 1.962 sum 11.490 -9.060 2.453 14.837 Atomic orbital electron populations 1.69995 1.08814 1.32331 1.41441 1.26054 0.95405 1.05510 0.87529 0.85061 0.79463 0.74979 0.79385 1.16977 1.18402 1.18293 1.30903 1.07153 1.12524 1.66671 0.86170 0.99866 0.72578 0.73983 0.71438 1.93310 1.74908 1.88430 1.46911 1.93299 1.74589 1.88260 1.47183 1.55399 1.54949 1.49572 1.27560 1.20305 0.92852 0.96056 0.88056 1.20953 0.96142 0.94675 1.02310 1.23189 0.95941 1.01459 0.98219 1.21029 0.98605 0.86100 0.98724 1.61164 1.10606 1.47868 1.11332 1.22111 0.87479 0.95633 1.01812 1.21182 0.99945 0.93899 1.01244 0.89073 0.75362 0.91793 0.91128 0.86726 0.89324 0.87842 0.83445 0.88761 0.91112 0.91442 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.65 13.19 21.45 0.28 -53.37 16 2 C 0.07 3.78 5.46 84.65 0.46 4.24 16 3 Si 0.99 41.18 29.54 68.60 2.03 43.21 16 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -1.04 -57.15 9.72 67.73 0.66 -56.49 16 8 H 0.12 5.93 7.81 -2.91 -0.02 5.90 16 9 S 2.72 147.26 5.02 -56.49 -0.28 146.97 16 10 O -1.05 -63.27 18.02 -128.00 -2.31 -65.58 16 11 O -1.04 -62.77 17.49 -128.00 -2.24 -65.01 16 12 N -1.12 -44.45 5.99 -190.78 -1.14 -45.59 16 13 C 0.15 5.18 6.27 85.64 0.54 5.72 16 14 C -0.14 -3.59 5.29 -15.39 -0.08 -3.67 16 15 C -0.17 -3.60 9.50 26.69 0.25 -3.35 16 16 C 0.08 1.42 6.74 85.41 0.58 2.00 16 17 N -0.68 -11.63 6.99 -518.25 -3.62 -15.25 16 18 C 0.06 1.09 6.64 86.27 0.57 1.67 16 19 C -0.12 -2.83 5.95 29.75 0.18 -2.65 16 20 H 0.30 16.03 8.31 -92.71 -0.77 15.26 16 21 H 0.41 14.51 8.65 -96.74 -0.84 13.67 16 22 H 0.06 2.34 7.73 -2.39 -0.02 2.32 16 23 H 0.07 2.26 7.85 -2.39 -0.02 2.24 16 24 H 0.11 2.44 7.81 -2.91 -0.02 2.42 16 25 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.35 5.22 8.78 -89.70 -0.79 4.43 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.38 8.09 -2.39 -0.02 1.36 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -74.98 278.85 -4.60 -79.58 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.47 Total: 27.58 kcal Atomic # 6 Polarization: -55.70 SS G_CDS: 3.16 Total: -52.55 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -4.48 Total: -114.21 kcal Atomic # 8 Polarization: -126.05 SS G_CDS: -4.54 Total: -130.59 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 147.26 SS G_CDS: -0.28 Total: 146.97 kcal Total: -74.98 -4.60 -79.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160519990.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.749 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds