Wall clock time and date at job start Mon Mar 30 2020 04:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39965 * 119.94186 * 2 1 4 4 C 1.35766 * 119.34988 * 180.02562 * 3 2 1 5 5 N 1.36318 * 119.15728 * 0.02562 * 4 3 2 6 6 N 1.39899 * 132.16030 * 179.97438 * 5 4 3 7 7 C 1.30688 * 109.54337 * 180.02562 * 6 5 4 8 8 C 1.40693 * 108.73068 * 0.02562 * 7 6 5 9 9 C 1.46489 * 126.55160 * 179.97438 * 8 7 6 10 10 O 1.21748 * 119.99695 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00370 * 0.02562 * 9 8 7 12 12 C 1.36976 * 120.00056 * 179.97438 * 11 9 8 13 13 H 1.07993 * 120.00568 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99717 * 179.97438 * 12 11 9 15 15 N 1.31437 * 119.99936 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99968 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46758 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47050 * 120.00103 * 16 14 12 19 19 H 1.48504 * 109.47063 * 239.99731 * 16 14 12 20 20 C 1.36622 * 119.72099 * 359.97438 * 5 4 3 21 21 N 1.31512 * 119.95168 * 180.02562 * 2 1 3 22 22 H 1.09004 * 109.46552 * 90.00345 * 1 2 3 23 23 H 1.09003 * 109.46838 * 209.99367 * 1 2 3 24 24 H 1.08990 * 109.47449 * 330.00185 * 1 2 3 25 25 H 1.08003 * 120.32058 * 359.74664 * 3 2 1 26 26 H 1.08003 * 120.41968 * 179.97438 * 4 3 2 27 27 H 1.08003 * 125.63665 * 179.97438 * 7 6 5 28 28 H 0.97001 * 119.99611 * 359.97438 * 11 9 8 29 29 H 0.97007 * 119.99872 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.2128 0.0000 4 6 3.5632 1.1988 -0.0005 5 7 4.2150 0.0016 -0.0016 6 7 5.5748 -0.3273 -0.0028 7 6 5.7103 -1.6271 -0.0040 8 6 4.4318 -2.2146 -0.0043 9 6 4.1305 -3.6481 -0.0061 10 8 2.9734 -4.0268 -0.0066 11 7 5.1340 -4.5477 -0.0072 12 6 4.8521 -5.8882 -0.0084 13 1 3.8258 -6.2242 -0.0080 14 6 5.8867 -6.8157 -0.0100 15 7 7.1359 -6.4067 -0.0110 16 14 5.5024 -8.6437 -0.0109 17 1 4.0304 -8.8400 -0.0089 18 1 6.0844 -9.2713 -1.2243 19 1 6.0869 -9.2730 1.2006 20 6 3.4968 -1.1607 -0.0016 21 7 2.1636 -1.1395 -0.0005 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5137 25 1 1.6699 2.1506 -0.0041 26 1 4.1197 2.1245 -0.0010 27 1 6.6485 -2.1620 -0.0055 28 1 6.0558 -4.2459 -0.0072 29 1 7.8582 -7.0542 -0.0126 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171187617.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:46 Heat of formation + Delta-G solvation = 80.941548 kcal Electronic energy + Delta-G solvation = -16833.092762 eV Core-core repulsion = 13951.549345 eV Total energy + Delta-G solvation = -2881.543418 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.11850 -38.38432 -37.45070 -34.01892 -33.73674 -32.03670 -31.13929 -29.35432 -28.09634 -25.21527 -23.74716 -22.40308 -21.94771 -19.40323 -18.21278 -17.67897 -16.88832 -15.94655 -15.83056 -15.17447 -14.51485 -14.17296 -13.81443 -13.78876 -13.34333 -13.09735 -12.65650 -12.61809 -12.34812 -11.70660 -11.49880 -11.14374 -11.14002 -10.92640 -10.30010 -10.18356 -9.54761 -9.47397 -9.31311 -8.31617 -7.91459 -7.58459 -6.40005 -3.73085 0.59974 0.95468 2.18928 2.60098 3.22263 3.30193 3.38278 3.45254 3.93631 4.13071 4.24954 4.34904 4.52548 4.81936 5.14390 5.17233 5.32766 5.37061 5.43531 5.47690 5.59576 5.63408 5.82498 6.14679 6.45213 6.54350 6.76494 7.57825 7.59002 7.92419 8.13659 8.69100 9.23365 9.60948 10.17771 10.78188 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.038730 B = 0.005657 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.782207 B = 4948.253812 C = 5655.892325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.184 3.816 3 C -0.224 4.224 4 C 0.159 3.841 5 N -0.316 5.316 6 N -0.319 5.319 7 C 0.113 3.887 8 C -0.237 4.237 9 C 0.515 3.485 10 O -0.581 6.581 11 N -0.556 5.556 12 C -0.287 4.287 13 H 0.106 0.894 14 C 0.019 3.981 15 N -0.899 5.899 16 Si 0.931 3.069 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.293 3.707 21 N -0.427 5.427 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.163 0.837 26 H 0.177 0.823 27 H 0.204 0.796 28 H 0.391 0.609 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 16.078 0.001 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.020 3.980 3 C -0.249 4.249 4 C 0.024 3.976 5 N -0.087 5.087 6 N -0.142 5.142 7 C -0.068 4.068 8 C -0.253 4.253 9 C 0.301 3.699 10 O -0.466 6.466 11 N -0.191 5.191 12 C -0.416 4.416 13 H 0.124 0.876 14 C -0.183 4.183 15 N -0.540 5.540 16 Si 0.758 3.242 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.063 3.937 21 N -0.138 5.138 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.181 0.819 26 H 0.194 0.806 27 H 0.221 0.779 28 H 0.224 0.776 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.338 15.798 0.003 17.022 hybrid contribution 0.664 -0.583 -0.013 0.883 sum -5.674 15.215 -0.010 16.239 Atomic orbital electron populations 1.20762 0.87304 1.04200 1.03803 1.21962 0.97971 0.87544 0.90562 1.21619 0.92459 1.01016 1.09756 1.21944 0.92605 0.88453 0.94609 1.46958 1.07692 1.06241 1.47837 1.77445 0.88846 1.16186 1.31719 1.24237 0.98906 0.90402 0.93222 1.20073 0.89779 0.94714 1.20779 1.16447 0.85984 0.82842 0.84580 1.90673 1.19693 1.79938 1.56304 1.41688 1.07536 1.05837 1.64086 1.19817 0.95125 0.80559 1.46145 0.87595 1.25288 0.94665 1.00777 0.97534 1.69629 0.98576 1.35511 1.50275 0.85767 0.78901 0.81842 0.77677 1.19128 1.20751 1.20754 1.20292 0.87723 0.86142 0.99549 1.68101 1.04130 1.27977 1.13628 0.89522 0.89512 0.90070 0.81912 0.80582 0.77903 0.77573 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.19 36.01 0.37 -0.58 15 2 C 0.18 2.46 6.83 -82.08 -0.56 1.90 15 3 C -0.22 -2.21 9.72 -39.82 -0.39 -2.60 15 4 C 0.16 1.84 11.29 -16.44 -0.19 1.66 15 5 N -0.32 -5.35 3.86 -11.95 -0.05 -5.40 15 6 N -0.32 -5.63 12.57 30.77 0.39 -5.24 15 7 C 0.11 2.09 11.44 -17.11 -0.20 1.90 15 8 C -0.24 -5.31 6.17 -104.65 -0.65 -5.95 15 9 C 0.51 13.69 7.73 -12.94 -0.10 13.59 15 10 O -0.58 -17.46 16.31 5.15 0.08 -17.38 15 11 N -0.56 -14.87 5.27 -12.22 -0.06 -14.94 15 12 C -0.29 -8.22 9.68 -14.99 -0.15 -8.36 15 13 H 0.11 3.18 7.15 -52.49 -0.38 2.80 15 14 C 0.02 0.52 5.50 -17.46 -0.10 0.42 15 15 N -0.90 -24.57 13.05 55.50 0.72 -23.85 15 16 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 15 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 19 H -0.28 -6.33 7.11 56.52 0.40 -5.92 15 20 C 0.29 6.01 7.74 -155.81 -1.21 4.81 15 21 N -0.43 -8.28 10.18 -8.22 -0.08 -8.36 15 22 H 0.09 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.08 0.46 8.09 -51.93 -0.42 0.04 15 25 H 0.16 0.82 8.06 -52.48 -0.42 0.39 15 26 H 0.18 1.29 8.06 -52.48 -0.42 0.87 15 27 H 0.20 3.21 7.46 -52.48 -0.39 2.81 15 28 H 0.39 9.76 6.81 -40.82 -0.28 9.48 15 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 LS Contribution 268.66 15.07 4.05 4.05 Total: -1.00 -36.40 268.66 -5.42 -41.82 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.29 Total: 6.24 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -3.16 Total: 6.77 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.92 Total: -57.78 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.08 Total: -17.38 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -36.40 -5.42 -41.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171187617.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.757 kcal (2) G-P(sol) polarization free energy of solvation -36.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds