Wall clock time and date at job start Mon Mar 30 2020 03:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.42055 * 2 1 4 4 O 1.44427 * 110.37125 * 122.31234 * 2 1 3 5 5 C 1.44428 * 105.27334 * 159.34256 * 4 2 1 6 6 C 1.54482 * 104.80366 * 319.48587 * 5 4 2 7 7 C 1.54488 * 110.37298 * 237.69158 * 2 1 3 8 8 H 1.09000 * 110.62471 * 98.48910 * 7 2 1 9 9 O 1.45203 * 110.50919 * 335.83554 * 7 2 1 10 10 C 1.34226 * 116.99798 * 153.90123 * 9 7 2 11 11 O 1.20824 * 119.99959 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99900 * 179.97438 * 10 9 7 13 13 S 1.81002 * 109.47178 * 180.02562 * 12 10 9 14 14 C 1.76198 * 100.00092 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00019 * 0.02562 * 14 13 12 16 16 C 1.38795 * 119.99810 * 179.97438 * 14 13 12 17 17 N 1.31635 * 119.99575 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 120.00242 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47244 * 90.00194 * 18 16 14 20 20 H 1.48498 * 109.47205 * 209.99923 * 18 16 14 21 21 H 1.48496 * 109.47344 * 330.00405 * 18 16 14 22 22 H 1.08996 * 109.47707 * 182.30755 * 1 2 3 23 23 H 1.09002 * 109.47518 * 302.31221 * 1 2 3 24 24 H 1.09004 * 109.47293 * 62.31019 * 1 2 3 25 25 H 1.08998 * 110.36845 * 200.65728 * 5 4 2 26 26 H 1.08992 * 110.37243 * 78.31960 * 5 4 2 27 27 H 1.09000 * 110.51093 * 265.33653 * 6 5 4 28 28 H 1.09004 * 110.62520 * 142.68484 * 6 5 4 29 29 H 1.09002 * 109.47152 * 60.00249 * 12 10 9 30 30 H 1.09001 * 109.46980 * 300.00350 * 12 10 9 31 31 H 0.97007 * 119.99682 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0214 0.0000 4 8 2.0327 -0.7237 1.1443 5 6 3.3873 -1.0872 0.7994 6 6 3.3177 -1.5057 -0.6860 7 6 2.0677 -0.7740 -1.2240 8 1 2.3426 -0.0856 -2.0232 9 8 1.0816 -1.7304 -1.6946 10 6 1.1380 -2.0760 -2.9904 11 8 1.9835 -1.5957 -3.7075 12 6 0.1473 -3.0639 -3.5505 13 16 0.4815 -3.3215 -5.3106 14 6 -0.7856 -4.4837 -5.6958 15 1 -1.4682 -4.8132 -4.9264 16 6 -0.9072 -4.9749 -6.9882 17 7 -1.8542 -5.8428 -7.2760 18 14 0.2720 -4.4035 -8.3194 19 1 1.4528 -5.3033 -8.3543 20 1 -0.4142 -4.4361 -9.6359 21 1 0.7150 -3.0168 -8.0263 22 1 -0.3634 -1.0268 0.0414 23 1 -0.3634 0.5493 0.8685 24 1 -0.3634 0.4776 -0.9100 25 1 3.7240 -1.9224 1.4136 26 1 4.0524 -0.2325 0.9221 27 1 3.1954 -2.5853 -0.7733 28 1 4.2105 -1.1791 -1.2192 29 1 -0.8635 -2.6756 -3.4253 30 1 0.2405 -4.0119 -3.0207 31 1 -1.9389 -6.1864 -8.1792 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187770115.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:27 Heat of formation + Delta-G solvation = -156.328838 kcal Electronic energy + Delta-G solvation = -15717.036889 eV Core-core repulsion = 12896.063105 eV Total energy + Delta-G solvation = -2820.973784 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.86720 -40.10095 -37.36381 -34.70207 -32.89332 -32.52583 -31.17706 -27.91649 -26.85101 -23.42447 -23.11380 -21.46483 -20.01822 -18.87992 -17.74932 -17.47507 -17.13777 -16.88230 -16.57246 -16.20463 -15.81847 -15.03506 -14.88323 -14.31450 -13.84245 -13.58892 -13.40921 -13.36595 -13.26831 -13.03685 -12.80051 -12.33600 -12.20271 -11.93610 -11.90062 -11.74121 -11.59367 -11.19348 -10.78601 -10.64817 -9.08015 -8.53559 -6.27522 0.75490 1.04319 1.31288 1.35277 1.48722 1.81176 2.22759 2.62185 2.79942 2.84735 3.39590 3.51308 3.60939 3.90034 4.07255 4.08196 4.24073 4.34087 4.35824 4.40283 4.62589 4.77448 4.82612 4.90607 4.97220 5.23816 5.33487 5.68567 5.78701 6.10344 6.61131 6.90311 8.58931 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.052185 B = 0.004844 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.422754 B = 5779.378311 C = 6001.149201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 H 0.114 0.886 4 O -0.387 6.387 5 C 0.049 3.951 6 C -0.174 4.174 7 C 0.045 3.955 8 H 0.100 0.900 9 O -0.336 6.336 10 C 0.489 3.511 11 O -0.515 6.515 12 C -0.092 4.092 13 S -0.159 6.159 14 C -0.534 4.534 15 H 0.064 0.936 16 C 0.048 3.952 17 N -0.915 5.915 18 Si 0.914 3.086 19 H -0.261 1.261 20 H -0.258 1.258 21 H -0.234 1.234 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.285 12.224 14.852 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.022 3.978 3 H 0.131 0.869 4 O -0.307 6.307 5 C -0.028 4.028 6 C -0.211 4.211 7 C -0.011 4.011 8 H 0.118 0.882 9 O -0.253 6.253 10 C 0.331 3.669 11 O -0.403 6.403 12 C -0.240 4.240 13 S 0.068 5.932 14 C -0.681 4.681 15 H 0.082 0.918 16 C -0.158 4.158 17 N -0.553 5.553 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.182 1.182 21 H -0.158 1.158 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.125 0.875 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.134 12.680 14.078 21.487 hybrid contribution -0.731 -0.892 -0.238 1.178 sum 9.403 11.788 13.840 20.467 Atomic orbital electron populations 1.21672 0.92102 1.03228 1.03164 1.23278 0.96996 0.95278 0.82208 0.86864 1.89174 1.28445 1.74950 1.38107 1.23547 0.84106 1.01648 0.93459 1.23443 0.97747 1.01848 0.98093 1.24511 0.87898 0.90537 0.98112 0.88176 1.86613 1.54711 1.58198 1.25749 1.22861 0.83270 0.80149 0.80579 1.90643 1.36822 1.52773 1.60055 1.22943 1.01486 1.01058 0.98485 1.84589 1.45170 1.57936 1.05534 1.22420 1.17334 1.28719 0.99660 0.91788 1.25557 0.96553 0.93671 0.99987 1.70019 1.33043 1.30036 1.22168 0.85875 0.79551 0.81634 0.79362 1.18550 1.18242 1.15755 0.92347 0.90419 0.90625 0.87480 0.89435 0.90745 0.87916 0.85682 0.85990 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.97 71.98 0.65 -2.12 16 2 C 0.08 1.52 3.90 31.10 0.12 1.64 16 3 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 4 O -0.39 -8.30 11.34 -148.98 -1.69 -9.99 16 5 C 0.05 0.77 7.63 72.49 0.55 1.32 16 6 C -0.17 -3.41 6.90 31.61 0.22 -3.19 16 7 C 0.04 1.03 3.25 31.61 0.10 1.13 16 8 H 0.10 2.34 7.26 -2.39 -0.02 2.32 16 9 O -0.34 -9.70 8.31 -51.38 -0.43 -10.12 16 10 C 0.49 16.95 7.97 71.24 0.57 17.52 16 11 O -0.51 -20.24 15.13 21.97 0.33 -19.91 16 12 C -0.09 -3.47 6.27 71.24 0.45 -3.02 16 13 S -0.16 -7.73 18.55 -56.49 -1.05 -8.78 16 14 C -0.53 -30.49 10.04 67.95 0.68 -29.81 16 15 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 16 C 0.05 2.77 5.50 84.86 0.47 3.24 16 17 N -0.92 -54.95 13.97 21.65 0.30 -54.65 16 18 Si 0.91 43.56 27.74 68.60 1.90 45.47 16 19 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.23 -10.98 6.74 99.48 0.67 -10.31 16 22 H 0.06 1.33 7.48 -2.39 -0.02 1.31 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.68 8.00 -2.39 -0.02 1.66 16 28 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 30 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 31 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -67.44 280.64 4.26 -63.18 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.08 Total: 8.09 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 3.80 Total: -13.29 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.30 Total: -54.65 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.78 Total: -40.02 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.90 Total: 45.47 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.05 Total: -8.78 kcal Total: -67.44 4.26 -63.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187770115.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.146 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds