Wall clock time and date at job start Mon Mar 30 2020 03:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.98871 * 2 1 4 4 O 1.44053 * 109.92966 * 238.75048 * 2 1 3 5 5 C 1.44377 * 106.98005 * 214.02304 * 4 2 1 6 6 C 1.54999 * 103.49294 * 40.14034 * 5 4 2 7 7 C 1.54103 * 109.87887 * 121.08215 * 2 1 3 8 8 H 1.09005 * 110.48652 * 240.26202 * 7 2 1 9 9 O 1.45193 * 110.49007 * 2.77843 * 7 2 1 10 10 C 1.34233 * 117.00142 * 208.15701 * 9 7 2 11 11 O 1.20821 * 119.99757 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99736 * 179.97438 * 10 9 7 13 13 S 1.81001 * 109.46896 * 179.97438 * 12 10 9 14 14 C 1.76201 * 99.99894 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00323 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99766 * 179.97438 * 14 13 12 17 17 N 1.31633 * 120.00034 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48490 * 109.46901 * 150.00205 * 18 16 14 22 22 H 1.08996 * 109.46891 * 298.91736 * 1 2 3 23 23 H 1.08999 * 109.47073 * 58.91818 * 1 2 3 24 24 H 1.09002 * 109.46919 * 178.92103 * 1 2 3 25 25 H 1.08998 * 110.62014 * 281.63482 * 5 4 2 26 26 H 1.09000 * 110.61478 * 158.63784 * 5 4 2 27 27 H 1.09000 * 110.90120 * 204.77828 * 6 5 4 28 28 H 1.08994 * 110.94074 * 81.18473 * 6 5 4 29 29 H 1.09001 * 109.47454 * 60.00204 * 12 10 9 30 30 H 1.09003 * 109.47322 * 299.99833 * 12 10 9 31 31 H 0.97001 * 119.99662 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0210 -0.7025 -1.1578 5 6 3.2407 -1.3663 -0.7623 6 6 2.9216 -1.8914 0.6607 7 6 2.0540 -0.7482 1.2411 8 1 2.6601 -0.0851 1.8586 9 8 0.9493 -1.2899 2.0120 10 6 1.1425 -1.4388 3.3320 11 8 2.1998 -1.1272 3.8267 12 6 0.0405 -1.9945 4.1968 13 16 0.6035 -2.0730 5.9152 14 6 -0.8377 -2.7391 6.6793 15 1 -1.7098 -2.9641 6.0834 16 6 -0.8520 -2.9748 8.0471 17 7 0.2108 -2.7001 8.7735 18 14 -2.3802 -3.6803 8.8573 19 1 -3.2679 -2.5713 9.2901 20 1 -3.1020 -4.5420 7.8869 21 1 -1.9856 -4.4885 10.0389 22 1 -0.3633 0.4969 0.8995 23 1 -0.3633 0.5305 -0.8801 24 1 -0.3633 -1.0275 -0.0194 25 1 4.0703 -0.6599 -0.7338 26 1 3.4629 -2.1940 -1.4359 27 1 3.8350 -2.0200 1.2415 28 1 2.3576 -2.8229 0.6148 29 1 -0.2203 -2.9959 3.8542 30 1 -0.8348 -1.3483 4.1300 31 1 0.2006 -2.8645 9.7294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187770175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:32 Heat of formation + Delta-G solvation = -136.567222 kcal Electronic energy + Delta-G solvation = -15651.775886 eV Core-core repulsion = 12831.659029 eV Total energy + Delta-G solvation = -2820.116857 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.58186 -39.00647 -36.02666 -32.50975 -31.83957 -31.61119 -29.55624 -25.94741 -25.54330 -22.48062 -22.00785 -20.20286 -18.10062 -17.27393 -16.80023 -16.10741 -15.76434 -15.65021 -14.87578 -14.83074 -14.13407 -13.57426 -13.19502 -12.81377 -12.68753 -12.59255 -12.32888 -12.14481 -11.45078 -11.33028 -11.12354 -11.08927 -10.90726 -10.82553 -10.53728 -10.09490 -9.93183 -9.85443 -9.13858 -8.39496 -6.63562 -6.29877 -4.02867 2.55787 2.59040 3.19019 3.21768 3.26876 3.46523 3.58722 4.12446 4.29848 4.49010 4.72860 4.82706 4.91156 5.06177 5.12296 5.23675 5.31170 5.40614 5.50732 5.60730 5.70724 5.73839 5.82028 5.86568 6.04237 6.20122 6.62130 6.66918 7.53024 8.10812 8.27886 9.15771 10.77649 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.055931 B = 0.004490 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.497116 B = 6234.542820 C = 6493.187878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.077 3.923 3 H 0.082 0.918 4 O -0.371 6.371 5 C 0.049 3.951 6 C -0.172 4.172 7 C 0.056 3.944 8 H 0.100 0.900 9 O -0.344 6.344 10 C 0.477 3.523 11 O -0.487 6.487 12 C -0.129 4.129 13 S -0.059 6.059 14 C -0.537 4.537 15 H 0.076 0.924 16 C 0.075 3.925 17 N -0.868 5.868 18 Si 0.922 3.078 19 H -0.276 1.276 20 H -0.271 1.271 21 H -0.281 1.281 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.098 0.902 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 3.325 -16.509 17.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.100 0.900 4 O -0.290 6.290 5 C -0.027 4.027 6 C -0.210 4.210 7 C 0.000 4.000 8 H 0.118 0.882 9 O -0.262 6.262 10 C 0.319 3.681 11 O -0.373 6.373 12 C -0.276 4.276 13 S 0.168 5.832 14 C -0.685 4.685 15 H 0.094 0.906 16 C -0.135 4.135 17 N -0.503 5.503 18 Si 0.748 3.252 19 H -0.202 1.202 20 H -0.196 1.196 21 H -0.207 1.207 22 H 0.092 0.908 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.777 3.723 -15.953 16.812 hybrid contribution -1.823 -0.785 0.274 2.003 sum 1.954 2.939 -15.680 16.072 Atomic orbital electron populations 1.21694 0.92362 1.03715 1.02108 1.22880 0.96865 0.94861 0.83426 0.90025 1.88980 1.39669 1.67747 1.32629 1.23479 0.87723 0.96691 0.94844 1.23570 1.01032 0.99574 0.96848 1.24070 0.87427 0.95887 0.92579 0.88188 1.86643 1.42389 1.76050 1.21073 1.23393 0.88967 0.75072 0.80695 1.90653 1.27402 1.45533 1.73671 1.23302 0.98503 1.04146 1.01689 1.85412 1.22143 1.84306 0.91386 1.22842 1.00400 1.49584 0.95636 0.90570 1.25004 0.97307 0.95045 0.96103 1.70011 1.28170 1.45085 1.06993 0.86117 0.81396 0.78973 0.78748 1.20162 1.19564 1.20693 0.90826 0.92153 0.91065 0.91755 0.88411 0.89101 0.89145 0.87909 0.87884 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.62 37.16 0.32 -1.24 16 2 C 0.08 0.88 4.07 -26.15 -0.11 0.78 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 O -0.37 -4.44 11.20 -35.23 -0.39 -4.83 16 5 C 0.05 0.47 7.72 38.21 0.29 0.76 16 6 C -0.17 -1.96 6.91 -24.72 -0.17 -2.13 16 7 C 0.06 0.74 3.33 -25.20 -0.08 0.65 16 8 H 0.10 1.35 7.20 -51.93 -0.37 0.98 16 9 O -0.34 -5.32 8.10 -39.27 -0.32 -5.64 16 10 C 0.48 8.93 7.97 36.01 0.29 9.22 16 11 O -0.49 -10.40 15.10 -18.75 -0.28 -10.69 16 12 C -0.13 -2.58 6.27 36.01 0.23 -2.35 16 13 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 14 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 15 H 0.08 2.01 7.80 -52.49 -0.41 1.60 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 18 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.85 7.81 -51.93 -0.41 0.45 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.07 8.09 -51.93 -0.42 0.65 16 29 H 0.10 1.92 8.14 -51.91 -0.42 1.50 16 30 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -31.75 283.09 -6.38 -38.14 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.11 Total: -1.64 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 0.96 Total: -6.95 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.73 Total: -24.87 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -1.00 Total: -21.15 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.75 -6.38 -38.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187770175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.431 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds