Wall clock time and date at job start Mon Mar 30 2020 03:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.98871 * 2 1 4 4 O 1.44053 * 109.92966 * 238.75048 * 2 1 3 5 5 C 1.44377 * 106.98005 * 214.02304 * 4 2 1 6 6 C 1.54999 * 103.49294 * 40.14034 * 5 4 2 7 7 C 1.54103 * 109.87887 * 121.08215 * 2 1 3 8 8 H 1.09005 * 110.48652 * 240.26202 * 7 2 1 9 9 O 1.45193 * 110.49007 * 2.77843 * 7 2 1 10 10 C 1.34233 * 117.00142 * 208.15701 * 9 7 2 11 11 O 1.20821 * 119.99757 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99736 * 179.97438 * 10 9 7 13 13 S 1.81001 * 109.46896 * 179.97438 * 12 10 9 14 14 C 1.76201 * 99.99894 * 180.02562 * 13 12 10 15 15 H 1.07991 * 120.00323 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99766 * 179.97438 * 14 13 12 17 17 N 1.31633 * 120.00034 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47174 * 270.00277 * 18 16 14 20 20 H 1.48501 * 109.47062 * 30.00228 * 18 16 14 21 21 H 1.48490 * 109.46901 * 150.00205 * 18 16 14 22 22 H 1.08996 * 109.46891 * 298.91736 * 1 2 3 23 23 H 1.08999 * 109.47073 * 58.91818 * 1 2 3 24 24 H 1.09002 * 109.46919 * 178.92103 * 1 2 3 25 25 H 1.08998 * 110.62014 * 281.63482 * 5 4 2 26 26 H 1.09000 * 110.61478 * 158.63784 * 5 4 2 27 27 H 1.09000 * 110.90120 * 204.77828 * 6 5 4 28 28 H 1.08994 * 110.94074 * 81.18473 * 6 5 4 29 29 H 1.09001 * 109.47454 * 60.00204 * 12 10 9 30 30 H 1.09003 * 109.47322 * 299.99833 * 12 10 9 31 31 H 0.97001 * 119.99662 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0210 -0.7025 -1.1578 5 6 3.2407 -1.3663 -0.7623 6 6 2.9216 -1.8914 0.6607 7 6 2.0540 -0.7482 1.2411 8 1 2.6601 -0.0851 1.8586 9 8 0.9493 -1.2899 2.0120 10 6 1.1425 -1.4388 3.3320 11 8 2.1998 -1.1272 3.8267 12 6 0.0405 -1.9945 4.1968 13 16 0.6035 -2.0730 5.9152 14 6 -0.8377 -2.7391 6.6793 15 1 -1.7098 -2.9641 6.0834 16 6 -0.8520 -2.9748 8.0471 17 7 0.2108 -2.7001 8.7735 18 14 -2.3802 -3.6803 8.8573 19 1 -3.2679 -2.5713 9.2901 20 1 -3.1020 -4.5420 7.8869 21 1 -1.9856 -4.4885 10.0389 22 1 -0.3633 0.4969 0.8995 23 1 -0.3633 0.5305 -0.8801 24 1 -0.3633 -1.0275 -0.0194 25 1 4.0703 -0.6599 -0.7338 26 1 3.4629 -2.1940 -1.4359 27 1 3.8350 -2.0200 1.2415 28 1 2.3576 -2.8229 0.6148 29 1 -0.2203 -2.9959 3.8542 30 1 -0.8348 -1.3483 4.1300 31 1 0.2006 -2.8645 9.7294 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187770175.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:32 Heat of formation + Delta-G solvation = -156.683112 kcal Electronic energy + Delta-G solvation = -15652.648176 eV Core-core repulsion = 12831.659029 eV Total energy + Delta-G solvation = -2820.989147 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.84128 -40.11843 -37.38793 -34.61611 -32.88987 -32.48806 -31.08735 -27.73243 -26.80756 -23.44293 -23.18869 -21.37555 -19.97296 -18.78518 -17.87119 -17.41384 -16.91000 -16.82855 -16.72094 -16.22934 -15.69661 -14.82597 -14.63684 -14.24649 -13.91013 -13.58785 -13.53468 -13.22797 -13.18527 -12.90107 -12.67346 -12.44604 -12.21848 -11.88931 -11.77469 -11.67841 -11.56316 -11.16328 -10.74991 -10.39205 -8.74448 -8.38165 -6.17945 0.98723 1.08896 1.40863 1.43238 1.55048 1.83807 2.23452 2.73966 2.97231 3.23085 3.35657 3.55408 3.69271 3.86101 4.05916 4.15675 4.20357 4.34418 4.41055 4.45849 4.63578 4.75696 4.82720 4.90398 4.99521 5.29019 5.33882 5.40740 5.78840 6.17561 6.65523 7.03891 8.71093 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.055931 B = 0.004490 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.497116 B = 6234.542820 C = 6493.187878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.080 3.920 3 H 0.102 0.898 4 O -0.385 6.385 5 C 0.052 3.948 6 C -0.173 4.173 7 C 0.045 3.955 8 H 0.094 0.906 9 O -0.333 6.333 10 C 0.488 3.512 11 O -0.518 6.518 12 C -0.109 4.109 13 S -0.136 6.136 14 C -0.549 4.549 15 H 0.086 0.914 16 C 0.018 3.982 17 N -0.910 5.910 18 Si 0.999 3.001 19 H -0.267 1.267 20 H -0.258 1.258 21 H -0.277 1.277 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.399 3.167 -17.896 18.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.022 3.978 3 H 0.119 0.881 4 O -0.304 6.304 5 C -0.024 4.024 6 C -0.211 4.211 7 C -0.010 4.010 8 H 0.112 0.888 9 O -0.250 6.250 10 C 0.330 3.670 11 O -0.406 6.406 12 C -0.257 4.257 13 S 0.091 5.909 14 C -0.697 4.697 15 H 0.104 0.896 16 C -0.188 4.188 17 N -0.546 5.546 18 Si 0.821 3.179 19 H -0.192 1.192 20 H -0.182 1.182 21 H -0.203 1.203 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.717 3.568 -17.377 17.946 hybrid contribution -1.439 -0.700 0.556 1.694 sum 1.278 2.868 -16.820 17.111 Atomic orbital electron populations 1.21698 0.92225 1.03165 1.02810 1.22958 0.97078 0.95407 0.82321 0.88065 1.88967 1.40705 1.68047 1.32724 1.23646 0.87388 0.97599 0.93734 1.23593 1.00658 0.98681 0.98176 1.24431 0.87020 0.96768 0.92826 0.88751 1.86612 1.43448 1.75681 1.19302 1.23025 0.87933 0.74419 0.81610 1.90648 1.28446 1.47002 1.74517 1.23092 0.99268 1.05835 0.97526 1.85510 1.23833 1.84644 0.96951 1.23197 1.00621 1.49543 0.96313 0.89623 1.26101 1.00762 0.95157 0.96737 1.70161 1.30656 1.46404 1.07410 0.84942 0.76957 0.78374 0.77663 1.19245 1.18228 1.20264 0.90928 0.90666 0.92235 0.89916 0.86465 0.88906 0.89810 0.86189 0.85954 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.62 71.98 0.62 -2.25 16 2 C 0.08 1.66 4.07 30.97 0.13 1.79 16 3 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 4 O -0.38 -8.29 11.20 -148.98 -1.67 -9.96 16 5 C 0.05 0.87 7.72 72.67 0.56 1.43 16 6 C -0.17 -3.69 6.91 31.90 0.22 -3.47 16 7 C 0.05 1.12 3.33 31.59 0.11 1.23 16 8 H 0.09 2.49 7.20 -2.38 -0.02 2.47 16 9 O -0.33 -9.94 8.10 -51.45 -0.42 -10.36 16 10 C 0.49 18.00 7.97 71.24 0.57 18.57 16 11 O -0.52 -22.29 15.10 21.98 0.33 -21.96 16 12 C -0.11 -4.28 6.27 71.24 0.45 -3.83 16 13 S -0.14 -7.30 20.58 -56.49 -1.16 -8.46 16 14 C -0.55 -30.53 9.50 67.96 0.65 -29.88 16 15 H 0.09 4.43 7.80 -2.92 -0.02 4.40 16 16 C 0.02 0.98 5.49 84.86 0.47 1.44 16 17 N -0.91 -54.48 13.22 21.65 0.29 -54.19 16 18 Si 1.00 42.58 29.55 68.60 2.03 44.60 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 H 0.07 1.47 7.94 -2.39 -0.02 1.45 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.33 7.81 -2.39 -0.02 1.32 16 25 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 29 H 0.12 4.32 8.14 -2.39 -0.02 4.30 16 30 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 31 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -68.38 283.09 4.27 -64.10 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 1.12 Total: 11.22 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.76 Total: -14.99 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.29 Total: -54.19 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.75 Total: -42.28 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -7.30 SS G_CDS: -1.16 Total: -8.46 kcal Total: -68.38 4.27 -64.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187770175.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.578 kcal (2) G-P(sol) polarization free energy of solvation -68.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds