Wall clock time and date at job start Mon Mar 30 2020 03:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39415 * 119.66977 * 43.90874 * 3 2 1 5 5 C 1.39706 * 118.88800 * 179.72430 * 4 3 2 6 6 C 1.48046 * 120.88326 * 179.97438 * 5 4 3 7 7 O 1.21427 * 120.00399 * 359.97438 * 6 5 4 8 8 O 1.34678 * 119.99897 * 179.97438 * 6 5 4 9 9 C 1.45193 * 116.99780 * 179.97438 * 8 6 5 10 10 C 1.53009 * 109.46683 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.46760 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00427 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99633 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00286 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99750 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47262 * 119.99891 * 15 13 11 18 18 H 1.48500 * 109.46810 * 239.99696 * 15 13 11 19 19 C 1.39911 * 118.23002 * 359.97438 * 5 4 3 20 20 C 1.38398 * 119.21616 * 0.02562 * 19 5 4 21 21 N 1.31543 * 121.05607 * 0.02562 * 20 19 5 22 22 H 1.08001 * 120.55264 * 359.74074 * 4 3 2 23 23 H 1.08994 * 109.47524 * 299.99965 * 9 8 6 24 24 H 1.08999 * 109.47409 * 60.00335 * 9 8 6 25 25 H 1.08994 * 109.47190 * 300.00265 * 10 9 8 26 26 H 1.08996 * 109.47096 * 60.00541 * 10 9 8 27 27 H 0.96994 * 119.99687 * 179.97438 * 14 13 11 28 28 H 1.08001 * 120.39376 * 179.97438 * 19 5 4 29 29 H 1.08002 * 119.47560 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2585 -0.8718 -0.8401 5 6 4.6554 -0.8533 -0.8311 6 6 5.4330 -1.7610 -1.7048 7 8 4.8571 -2.5354 -2.4417 8 8 6.7791 -1.7279 -1.6821 9 6 7.4760 -2.6463 -2.5647 10 6 8.9863 -2.4637 -2.4011 11 6 9.7096 -3.4165 -3.3177 12 1 9.1483 -4.0852 -3.9535 13 6 11.0880 -3.4346 -3.3444 14 7 11.7716 -2.6201 -2.5705 15 14 11.9847 -4.6152 -4.4810 16 1 10.9941 -5.4180 -5.2421 17 1 12.8304 -3.8448 -5.4277 18 1 12.8424 -5.5218 -3.6762 19 6 5.2999 0.0458 0.0255 20 6 4.5390 0.8781 0.8277 21 7 3.2246 0.8353 0.7962 22 1 2.7224 -1.5503 -1.4872 23 1 7.2040 -3.6709 -2.3111 24 1 7.1954 -2.4410 -3.5977 25 1 9.2580 -1.4391 -2.6550 26 1 9.2673 -2.6688 -1.3682 27 1 12.7413 -2.6332 -2.5891 28 1 6.3784 0.0892 0.0609 29 1 5.0321 1.5735 1.4908 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193325334.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:45 Heat of formation + Delta-G solvation = -42.506942 kcal Electronic energy + Delta-G solvation = -15897.523075 eV Core-core repulsion = 12978.333778 eV Total energy + Delta-G solvation = -2919.189297 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.00812 -40.87819 -37.83711 -37.73957 -35.44430 -34.18935 -32.86157 -32.21707 -27.56170 -26.37389 -25.46897 -23.28207 -22.61270 -20.62025 -18.93311 -18.29678 -17.76609 -17.61603 -17.17490 -16.81920 -16.44139 -15.92347 -15.51443 -15.08702 -14.60302 -14.42216 -14.35117 -14.10280 -14.03043 -13.19667 -13.16938 -12.96374 -12.62574 -12.58268 -12.08437 -11.62602 -11.50650 -11.38564 -11.27159 -10.94378 -10.58672 -10.38261 -8.25100 -6.37002 -0.81756 -0.46502 1.22095 1.22609 1.43243 1.43333 1.50929 1.58510 1.77375 2.30468 2.42027 2.70487 3.10245 3.33492 3.49972 3.63068 3.68642 4.08507 4.25608 4.25879 4.42933 4.54757 4.72780 4.86332 5.21393 5.29224 5.48456 5.51694 5.75926 6.09325 6.12465 6.49956 6.53810 6.76976 7.32757 8.87208 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.057653 B = 0.003675 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.549244 B = 7616.335954 C = 8081.435000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.289 3.711 3 C 0.179 3.821 4 C -0.054 4.054 5 C -0.083 4.083 6 C 0.504 3.496 7 O -0.527 6.527 8 O -0.349 6.349 9 C 0.091 3.909 10 C 0.030 3.970 11 C -0.550 4.550 12 H 0.064 0.936 13 C 0.009 3.991 14 N -0.924 5.924 15 Si 0.968 3.032 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.069 4.069 20 C 0.121 3.879 21 N -0.443 5.443 22 H 0.163 0.837 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.267 0.733 28 H 0.179 0.821 29 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.599 6.622 6.431 14.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.028 4.028 3 C 0.042 3.958 4 C -0.077 4.077 5 C -0.092 4.092 6 C 0.349 3.651 7 O -0.417 6.417 8 O -0.264 6.264 9 C 0.018 3.982 10 C -0.007 4.007 11 C -0.587 4.587 12 H 0.082 0.918 13 C -0.190 4.190 14 N -0.563 5.563 15 Si 0.793 3.207 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.090 4.090 20 C -0.039 4.039 21 N -0.154 5.154 22 H 0.180 0.820 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.030 0.970 26 H 0.030 0.970 27 H 0.076 0.924 28 H 0.197 0.803 29 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -13.795 6.967 6.765 16.870 hybrid contribution 1.507 -1.279 -1.228 2.327 sum -12.288 5.688 5.537 14.629 Atomic orbital electron populations 1.81277 1.12356 1.08007 1.08048 1.24905 0.91548 0.93174 0.93188 1.15959 0.85700 0.96767 0.97380 1.22078 0.92671 0.96654 0.96299 1.19336 0.92722 0.98278 0.98841 1.21379 0.81796 0.81331 0.80608 1.90824 1.71806 1.39099 1.40001 1.86518 1.18971 1.59513 1.61434 1.23280 0.92632 0.90748 0.91556 1.18996 0.87480 0.97112 0.97115 1.21412 0.92133 1.21295 1.23902 0.91789 1.25874 0.98436 0.97471 0.97242 1.70075 1.07522 1.38742 1.39945 0.85346 0.78389 0.78522 0.78474 1.18773 1.20242 1.20246 1.23197 1.04476 0.90659 0.90665 1.23536 0.86617 0.97040 0.96678 1.67469 1.12306 1.18124 1.17495 0.81976 0.91802 0.91813 0.97000 0.96994 0.92390 0.80339 0.76209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -10.43 18.54 19.00 0.35 -10.08 15 2 C 0.29 6.05 15.53 88.34 1.37 7.42 15 3 C 0.18 3.23 6.58 40.54 0.27 3.50 15 4 C -0.05 -1.01 9.36 22.91 0.21 -0.80 15 5 C -0.08 -1.72 5.90 -19.92 -0.12 -1.83 15 6 C 0.50 14.91 7.92 70.42 0.56 15.46 15 7 O -0.53 -18.33 16.23 20.07 0.33 -18.01 15 8 O -0.35 -11.80 9.57 -55.87 -0.53 -12.33 15 9 C 0.09 3.65 5.41 71.99 0.39 4.04 15 10 C 0.03 1.48 5.35 29.85 0.16 1.64 15 11 C -0.55 -29.47 9.11 25.60 0.23 -29.24 15 12 H 0.06 3.30 7.74 -2.91 -0.02 3.28 15 13 C 0.01 0.49 5.46 84.65 0.46 0.95 15 14 N -0.92 -52.69 13.29 21.45 0.28 -52.40 15 15 Si 0.97 41.94 29.54 68.60 2.03 43.96 15 16 H -0.26 -10.99 7.11 99.48 0.71 -10.29 15 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 19 C -0.07 -1.00 9.71 22.71 0.22 -0.78 15 20 C 0.12 1.34 11.17 84.77 0.95 2.29 15 21 N -0.44 -7.30 10.25 -189.36 -1.94 -9.24 15 22 H 0.16 2.89 7.74 -2.91 -0.02 2.87 15 23 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.06 2.54 8.14 -2.39 -0.02 2.52 15 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 26 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 27 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 28 H 0.18 2.22 7.70 -2.91 -0.02 2.19 15 29 H 0.22 0.61 8.06 -2.91 -0.02 0.59 15 Total: -1.00 -65.47 282.35 6.40 -59.07 By element: Atomic # 1 Polarization: -4.81 SS G_CDS: 1.18 Total: -3.63 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 4.71 Total: 2.66 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -1.30 Total: -71.73 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.21 Total: -30.34 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -65.47 6.40 -59.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193325334.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.563 kcal (2) G-P(sol) polarization free energy of solvation -65.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds