Wall clock time and date at job start Mon Mar 30 2020 04:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37729 * 126.55038 * 2 1 4 4 C 1.40215 * 125.28717 * 0.03336 * 3 2 1 5 5 H 1.07996 * 120.00021 * 0.02562 * 4 3 2 6 6 C 1.40439 * 120.00027 * 180.02562 * 4 3 2 7 7 N 1.30527 * 119.99606 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99928 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47479 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46971 * 120.00418 * 8 6 4 11 11 H 1.48501 * 109.47162 * 239.99746 * 8 6 4 12 12 N 1.32518 * 109.42374 * 180.02562 * 3 2 1 13 13 C 1.33813 * 109.83309 * 359.97438 * 12 3 2 14 14 C 1.40750 * 132.98165 * 180.02562 * 13 12 3 15 15 C 1.35948 * 120.05922 * 180.02562 * 14 13 12 16 16 C 1.40404 * 120.61094 * 359.97231 * 15 14 13 17 17 C 1.47523 * 119.88094 * 180.02562 * 16 15 14 18 18 O 1.21499 * 120.00142 * 180.02562 * 17 16 15 19 19 O 1.34756 * 120.00129 * 0.02562 * 17 16 15 20 20 C 1.39467 * 120.23916 * 0.27665 * 16 15 14 21 21 C 1.38046 * 126.55063 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47470 * 269.99964 * 1 2 3 23 23 H 1.08999 * 109.47401 * 30.00027 * 1 2 3 24 24 H 1.09002 * 109.47285 * 150.00026 * 1 2 3 25 25 H 0.97001 * 119.99809 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.97290 * 0.02562 * 14 13 12 27 27 H 1.08004 * 119.69131 * 179.97438 * 15 14 13 28 28 H 0.96700 * 117.00284 * 180.02562 * 19 17 16 29 29 H 1.08000 * 120.18510 * 179.70232 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2852 1.1064 0.0000 4 6 1.8481 2.4387 0.0007 5 1 0.7911 2.6603 0.0017 6 6 2.7848 3.4851 0.0000 7 7 4.0623 3.2172 -0.0006 8 14 2.2026 5.2599 0.0002 9 1 0.7180 5.2939 0.0004 10 1 2.7142 5.9486 1.2123 11 1 2.7128 5.9484 -1.2126 12 7 3.5516 0.7162 -0.0006 13 6 3.6148 -0.6205 -0.0004 14 6 4.6886 -1.5304 -0.0003 15 6 4.4475 -2.8683 -0.0006 16 6 3.1315 -3.3576 -0.0005 17 6 2.8883 -4.8126 -0.0002 18 8 1.7504 -5.2384 -0.0006 19 8 3.9283 -5.6695 0.0003 20 6 2.0532 -2.4730 -0.0058 21 6 2.2871 -1.1090 0.0005 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.7094 3.9399 -0.0014 26 1 5.7051 -1.1654 0.0000 27 1 5.2760 -3.5612 -0.0010 28 1 3.7193 -6.6137 0.0000 29 1 1.0413 -2.8503 -0.0105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213535619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:04 Heat of formation + Delta-G solvation = -30.494174 kcal Electronic energy + Delta-G solvation = -16920.030403 eV Core-core repulsion = 14001.362019 eV Total energy + Delta-G solvation = -2918.668384 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62955 -39.47662 -36.17361 -35.52255 -33.86056 -32.82406 -29.70467 -29.20787 -26.71719 -25.89092 -23.08657 -21.48087 -20.27996 -19.81913 -17.58816 -17.17871 -16.67648 -16.20589 -15.07715 -15.07538 -14.60120 -14.54103 -13.86085 -13.26645 -12.96386 -12.71718 -12.37525 -12.23297 -11.91771 -11.56608 -11.47843 -11.19543 -10.92476 -10.61072 -10.54175 -10.47364 -10.02507 -9.56126 -9.23418 -8.20275 -7.51935 -7.11285 -6.93044 -4.89377 1.50859 2.40999 2.80722 2.90074 2.95461 3.22143 3.51456 3.67118 3.99283 4.01315 4.75273 5.26232 5.46484 5.51143 5.75832 5.76612 5.85710 5.99893 6.12966 6.26237 6.44488 6.60283 6.74902 6.90034 6.99449 7.20754 7.26739 7.46501 7.62692 7.74763 8.03210 8.35895 8.45627 8.74856 9.63951 9.94789 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.047460 B = 0.005758 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.825115 B = 4861.292478 C = 5435.973094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.546 5.546 3 C 0.420 3.580 4 C -0.422 4.422 5 H 0.094 0.906 6 C 0.072 3.928 7 N -0.703 5.703 8 Si 0.924 3.076 9 H -0.258 1.258 10 H -0.269 1.269 11 H -0.269 1.269 12 N -0.529 5.529 13 C 0.154 3.846 14 C -0.150 4.150 15 C -0.057 4.057 16 C -0.213 4.213 17 C 0.535 3.465 18 O -0.548 6.548 19 O -0.519 6.519 20 C -0.024 4.024 21 C -0.022 4.022 22 H 0.052 0.948 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.284 0.716 26 H 0.118 0.882 27 H 0.121 0.879 28 H 0.401 0.599 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 -3.868 -0.090 4.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.243 5.243 3 C 0.188 3.812 4 C -0.458 4.458 5 H 0.112 0.888 6 C -0.157 4.157 7 N -0.324 5.324 8 Si 0.747 3.253 9 H -0.182 1.182 10 H -0.194 1.194 11 H -0.194 1.194 12 N -0.252 5.252 13 C 0.019 3.981 14 C -0.171 4.171 15 C -0.078 4.078 16 C -0.217 4.217 17 C 0.384 3.616 18 O -0.441 6.441 19 O -0.330 6.330 20 C -0.047 4.047 21 C -0.129 4.129 22 H 0.071 0.929 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.258 0.742 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.465 -2.844 -0.092 3.201 hybrid contribution -1.189 -0.457 0.012 1.274 sum -2.654 -3.301 -0.080 4.236 Atomic orbital electron populations 1.21482 0.78661 1.02594 1.01402 1.45300 1.05317 1.05102 1.68585 1.20509 0.83383 0.87638 0.89665 1.18771 0.95184 0.86666 1.45228 0.88816 1.25993 0.94386 1.01916 0.93397 1.69933 1.01706 1.34966 1.25773 0.85993 0.80262 0.80036 0.79016 1.18179 1.19364 1.19373 1.71416 1.16129 1.06183 1.31488 1.19835 0.91027 0.92581 0.94616 1.19697 0.97061 0.91057 1.09272 1.20423 0.94816 0.94821 0.97743 1.17933 0.94172 0.87067 1.22546 1.20992 0.81536 0.87727 0.71316 1.90790 1.24004 1.79734 1.49563 1.84619 1.40131 1.21599 1.86624 1.19539 0.97602 0.88956 0.98585 1.18626 0.92698 0.88527 1.13008 0.92901 0.90476 0.91814 0.90445 0.86383 0.86151 0.74233 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 10.93 59.84 0.65 2.43 15 2 N -0.55 -12.53 3.26 -120.90 -0.39 -12.92 15 3 C 0.42 10.83 7.41 -155.74 -1.15 9.67 15 4 C -0.42 -10.15 9.00 -38.01 -0.34 -10.50 15 5 H 0.09 2.02 7.10 -52.49 -0.37 1.64 15 6 C 0.07 1.67 5.50 -17.28 -0.10 1.58 15 7 N -0.70 -17.49 11.85 55.57 0.66 -16.83 15 8 Si 0.92 16.67 29.56 -169.99 -5.03 11.64 15 9 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 10 H -0.27 -4.81 7.11 56.52 0.40 -4.40 15 11 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 12 N -0.53 -14.49 9.32 -10.26 -0.10 -14.58 15 13 C 0.15 3.85 7.20 -84.82 -0.61 3.24 15 14 C -0.15 -3.24 10.05 -39.45 -0.40 -3.64 15 15 C -0.06 -1.10 9.52 -39.59 -0.38 -1.48 15 16 C -0.21 -4.30 5.88 -104.84 -0.62 -4.91 15 17 C 0.54 9.82 8.26 34.52 0.29 10.10 15 18 O -0.55 -11.17 17.11 -19.26 -0.33 -11.50 15 19 O -0.52 -7.40 12.65 -40.64 -0.51 -7.92 15 20 C -0.02 -0.52 9.58 -39.07 -0.37 -0.90 15 21 C -0.02 -0.53 6.87 -83.78 -0.58 -1.10 15 22 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 23 H 0.08 1.23 7.32 -51.93 -0.38 0.85 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.28 6.29 8.29 -40.82 -0.34 5.95 15 26 H 0.12 2.38 8.06 -52.49 -0.42 1.96 15 27 H 0.12 1.99 7.58 -52.48 -0.40 1.60 15 28 H 0.40 3.63 9.11 45.56 0.42 4.04 15 29 H 0.11 2.27 7.63 -52.49 -0.40 1.87 15 LS Contribution 266.64 15.07 4.02 4.02 Total: -1.00 -30.77 266.64 -6.82 -37.59 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -1.54 Total: 6.00 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -3.60 Total: 4.50 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.17 Total: -44.34 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.84 Total: -19.41 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.77 -6.82 -37.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213535619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.099 kcal (2) G-P(sol) polarization free energy of solvation -30.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds