Wall clock time and date at job start Mon Mar 30 2020 04:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.37729 * 126.55038 * 2 1 4 4 C 1.40215 * 125.28717 * 0.03336 * 3 2 1 5 5 H 1.07996 * 120.00021 * 0.02562 * 4 3 2 6 6 C 1.40439 * 120.00027 * 180.02562 * 4 3 2 7 7 N 1.30527 * 119.99606 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99928 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47479 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.46971 * 120.00418 * 8 6 4 11 11 H 1.48501 * 109.47162 * 239.99746 * 8 6 4 12 12 N 1.32518 * 109.42374 * 180.02562 * 3 2 1 13 13 C 1.33813 * 109.83309 * 359.97438 * 12 3 2 14 14 C 1.40750 * 132.98165 * 180.02562 * 13 12 3 15 15 C 1.35948 * 120.05922 * 180.02562 * 14 13 12 16 16 C 1.40404 * 120.61094 * 359.97231 * 15 14 13 17 17 C 1.47523 * 119.88094 * 180.02562 * 16 15 14 18 18 O 1.21499 * 120.00142 * 180.02562 * 17 16 15 19 19 O 1.34756 * 120.00129 * 0.02562 * 17 16 15 20 20 C 1.39467 * 120.23916 * 0.27665 * 16 15 14 21 21 C 1.38046 * 126.55063 * 179.97438 * 2 1 3 22 22 H 1.08997 * 109.47470 * 269.99964 * 1 2 3 23 23 H 1.08999 * 109.47401 * 30.00027 * 1 2 3 24 24 H 1.09002 * 109.47285 * 150.00026 * 1 2 3 25 25 H 0.97001 * 119.99809 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.97290 * 0.02562 * 14 13 12 27 27 H 1.08004 * 119.69131 * 179.97438 * 15 14 13 28 28 H 0.96700 * 117.00284 * 180.02562 * 19 17 16 29 29 H 1.08000 * 120.18510 * 179.70232 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2852 1.1064 0.0000 4 6 1.8481 2.4387 0.0007 5 1 0.7911 2.6603 0.0017 6 6 2.7848 3.4851 0.0000 7 7 4.0623 3.2172 -0.0006 8 14 2.2026 5.2599 0.0002 9 1 0.7180 5.2939 0.0004 10 1 2.7142 5.9486 1.2123 11 1 2.7128 5.9484 -1.2126 12 7 3.5516 0.7162 -0.0006 13 6 3.6148 -0.6205 -0.0004 14 6 4.6886 -1.5304 -0.0003 15 6 4.4475 -2.8683 -0.0006 16 6 3.1315 -3.3576 -0.0005 17 6 2.8883 -4.8126 -0.0002 18 8 1.7504 -5.2384 -0.0006 19 8 3.9283 -5.6695 0.0003 20 6 2.0532 -2.4730 -0.0058 21 6 2.2871 -1.1090 0.0005 22 1 -0.3634 0.0000 1.0276 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.7094 3.9399 -0.0014 26 1 5.7051 -1.1654 0.0000 27 1 5.2760 -3.5612 -0.0010 28 1 3.7193 -6.6137 0.0000 29 1 1.0413 -2.8503 -0.0105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213535619.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:03 Heat of formation + Delta-G solvation = -50.261116 kcal Electronic energy + Delta-G solvation = -16920.887562 eV Core-core repulsion = 14001.362019 eV Total energy + Delta-G solvation = -2919.525543 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.34239 -40.92696 -37.79031 -36.90354 -35.56214 -34.51546 -31.36521 -30.91142 -28.42586 -27.43805 -24.67330 -23.17308 -21.83662 -21.52671 -19.08790 -18.84902 -18.19599 -17.84823 -16.71741 -16.52947 -16.15252 -16.14884 -15.40632 -14.88755 -14.59326 -14.22562 -13.90048 -13.73770 -13.47944 -13.08041 -12.99653 -12.58983 -12.53139 -12.20523 -12.16763 -11.91416 -11.54870 -11.19598 -10.96070 -10.02071 -9.25876 -8.82891 -8.62135 -6.69867 -0.14048 0.75108 1.35130 1.42466 1.60341 1.68114 2.04425 2.21418 2.32031 2.50335 3.06033 3.47158 3.80492 4.08439 4.18338 4.30703 4.44172 4.52075 4.61320 4.67899 4.82199 4.98760 5.07753 5.36543 5.49895 5.55212 5.72693 5.78643 5.97017 6.03083 6.31227 6.62234 7.02399 7.16279 7.85792 8.29727 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.047460 B = 0.005758 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.825115 B = 4861.292478 C = 5435.973094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.550 5.550 3 C 0.392 3.608 4 C -0.448 4.448 5 H 0.112 0.888 6 C 0.029 3.971 7 N -0.754 5.754 8 Si 1.006 2.994 9 H -0.244 1.244 10 H -0.266 1.266 11 H -0.266 1.266 12 N -0.576 5.576 13 C 0.109 3.891 14 C -0.158 4.158 15 C -0.044 4.044 16 C -0.210 4.210 17 C 0.548 3.452 18 O -0.567 6.567 19 O -0.503 6.503 20 C -0.028 4.028 21 C -0.038 4.038 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.290 0.710 26 H 0.125 0.875 27 H 0.156 0.844 28 H 0.429 0.571 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.703 -4.936 -0.099 5.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.247 5.247 3 C 0.158 3.842 4 C -0.484 4.484 5 H 0.130 0.870 6 C -0.196 4.196 7 N -0.375 5.375 8 Si 0.824 3.176 9 H -0.167 1.167 10 H -0.191 1.191 11 H -0.191 1.191 12 N -0.300 5.300 13 C -0.023 4.023 14 C -0.180 4.180 15 C -0.065 4.065 16 C -0.214 4.214 17 C 0.397 3.603 18 O -0.461 6.461 19 O -0.316 6.316 20 C -0.050 4.050 21 C -0.144 4.144 22 H 0.085 0.915 23 H 0.108 0.892 24 H 0.100 0.900 25 H 0.101 0.899 26 H 0.143 0.857 27 H 0.174 0.826 28 H 0.290 0.710 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.187 -3.996 -0.100 4.557 hybrid contribution -0.910 -0.436 0.016 1.009 sum -3.097 -4.433 -0.084 5.408 Atomic orbital electron populations 1.21783 0.75909 1.04148 1.02806 1.45536 1.07015 1.04243 1.67888 1.20911 0.83785 0.88902 0.90604 1.19253 0.96408 0.86650 1.46087 0.87008 1.27094 0.94103 1.06416 0.91984 1.70050 1.03312 1.36737 1.27438 0.84801 0.80286 0.73599 0.78885 1.16718 1.19072 1.19053 1.71297 1.17766 1.07631 1.33319 1.20364 0.92902 0.92560 0.96479 1.19954 0.96833 0.91783 1.09388 1.20709 0.95644 0.94248 0.95849 1.18297 0.94168 0.88553 1.20384 1.20527 0.81733 0.87338 0.70721 1.90799 1.25059 1.80026 1.50260 1.84533 1.38131 1.23433 1.85514 1.19720 0.98675 0.88240 0.98383 1.18900 0.92480 0.89461 1.13602 0.91476 0.89235 0.89956 0.89947 0.85733 0.82620 0.71005 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.25 10.93 127.77 1.40 4.65 15 2 N -0.55 -25.64 3.26 -536.41 -1.75 -27.39 15 3 C 0.39 20.90 7.41 133.72 0.99 21.89 15 4 C -0.45 -22.00 9.00 23.29 0.21 -21.79 15 5 H 0.11 4.81 7.10 -2.91 -0.02 4.79 15 6 C 0.03 1.35 5.50 85.42 0.47 1.82 15 7 N -0.75 -39.00 11.85 21.91 0.26 -38.74 15 8 Si 1.01 34.17 29.56 68.60 2.03 36.20 15 9 H -0.24 -7.64 7.11 99.48 0.71 -6.94 15 10 H -0.27 -8.82 7.11 99.48 0.71 -8.11 15 11 H -0.27 -8.80 7.11 99.48 0.71 -8.09 15 12 N -0.58 -32.95 9.32 -186.38 -1.74 -34.69 15 13 C 0.11 5.62 7.20 40.25 0.29 5.91 15 14 C -0.16 -6.89 10.05 22.35 0.22 -6.67 15 15 C -0.04 -1.61 9.52 22.27 0.21 -1.39 15 16 C -0.21 -8.02 5.88 -20.01 -0.12 -8.14 15 17 C 0.55 18.28 8.26 70.27 0.58 18.86 15 18 O -0.57 -21.43 17.11 19.84 0.34 -21.10 15 19 O -0.50 -12.07 12.65 -56.66 -0.72 -12.79 15 20 C -0.03 -1.18 9.58 22.60 0.22 -0.96 15 21 C -0.04 -1.80 6.87 39.00 0.27 -1.53 15 22 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.09 2.78 7.32 -2.39 -0.02 2.77 15 24 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.29 13.36 8.29 -92.71 -0.77 12.59 15 26 H 0.12 5.10 8.06 -2.91 -0.02 5.08 15 27 H 0.16 4.57 7.58 -2.91 -0.02 4.55 15 28 H 0.43 5.66 9.11 -74.06 -0.67 4.98 15 29 H 0.12 4.81 7.63 -2.91 -0.02 4.78 15 Total: -1.00 -68.67 266.64 3.70 -64.97 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.53 Total: 20.88 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 4.74 Total: 12.65 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -3.22 Total: -100.83 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.38 Total: -33.88 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Total: -68.67 3.70 -64.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213535619.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.714 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds