Wall clock time and date at job start Mon Mar 30 2020 03:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48500 * 109.46973 * 240.00234 * 3 2 1 5 5 H 1.48504 * 109.46951 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47303 * 120.00058 * 3 2 1 7 7 C 1.37873 * 119.99752 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00403 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40250 * 66.45879 * 9 7 2 11 11 O 1.42101 * 106.40206 * 293.53948 * 9 7 2 12 12 N 1.65605 * 107.22068 * 180.02562 * 9 7 2 13 13 C 1.49422 * 127.40885 * 90.02132 * 12 9 7 14 14 C 1.56157 * 106.44620 * 188.75924 * 13 12 9 15 15 C 1.53824 * 100.64788 * 24.78400 * 14 13 12 16 16 H 1.09000 * 114.26852 * 77.05957 * 15 14 13 17 17 C 1.53405 * 117.91001 * 214.87741 * 15 14 13 18 18 N 1.49797 * 102.48717 * 146.58878 * 17 15 14 19 19 C 1.49661 * 107.67690 * 333.11656 * 18 17 15 20 20 C 1.42038 * 127.40518 * 269.99755 * 12 9 7 21 21 H 1.09000 * 106.92606 * 251.82179 * 20 12 9 22 22 H 0.96994 * 119.99994 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.07174 * 308.02322 * 13 12 9 24 24 H 1.08997 * 110.07213 * 69.49802 * 13 12 9 25 25 H 1.09000 * 111.16587 * 142.66055 * 14 13 12 26 26 H 1.09000 * 111.16925 * 266.93209 * 14 13 12 27 27 H 1.09000 * 110.80597 * 264.83460 * 17 15 14 28 28 H 1.09006 * 110.80690 * 28.14244 * 17 15 14 29 29 H 1.00897 * 110.99527 * 211.43577 * 18 17 15 30 30 H 1.09003 * 110.45336 * 235.42966 * 19 18 17 31 31 H 1.09000 * 110.44714 * 112.88472 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1236 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2475 11 8 0.4519 -2.7945 1.2519 12 7 2.2483 -3.9355 0.0030 13 6 2.8645 -4.6010 1.1905 14 6 4.0131 -5.5065 0.6433 15 6 4.3376 -4.7872 -0.6771 16 1 4.9263 -3.8775 -0.5588 17 6 4.7554 -5.6451 -1.8783 18 7 4.1878 -4.8811 -3.0350 19 6 3.0051 -4.1120 -2.5352 20 6 2.8343 -4.5698 -1.1247 21 1 2.4136 -5.5739 -1.1783 22 1 -0.4850 0.8400 0.0004 23 1 3.2704 -3.8519 1.8704 24 1 2.1215 -5.2097 1.7056 25 1 4.8711 -5.5030 1.3155 26 1 3.6613 -6.5222 0.4625 27 1 5.8412 -5.7071 -1.9508 28 1 4.3158 -6.6405 -1.8147 29 1 3.9242 -5.5030 -3.7845 30 1 2.1190 -4.3513 -3.1232 31 1 3.2064 -3.0412 -2.5665 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214453564.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:58 Heat of formation + Delta-G solvation = -88.700734 kcal Electronic energy + Delta-G solvation = -16972.187380 eV Core-core repulsion = 14186.438922 eV Total energy + Delta-G solvation = -2785.748459 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.22090 -37.49667 -36.34348 -36.21159 -35.21622 -32.22102 -29.16365 -28.31397 -28.15230 -23.21582 -22.75795 -21.45504 -20.56283 -19.03269 -18.07314 -17.69139 -17.04403 -16.74898 -16.13631 -15.86868 -15.26982 -14.83698 -14.23914 -14.02873 -13.99744 -13.46595 -13.35537 -13.04035 -13.01045 -12.93381 -12.58351 -12.51987 -12.35410 -12.32553 -11.82404 -11.79594 -11.27547 -11.24756 -10.97541 -9.84451 -9.42656 -8.78185 -7.53444 0.19575 1.30331 1.33065 1.46199 2.16888 2.53254 2.58412 3.13421 3.26374 3.63982 3.80939 3.94415 3.95386 4.22445 4.30559 4.39828 4.48953 4.61419 4.69425 4.82030 4.94165 5.03161 5.03235 5.13633 5.19213 5.38281 5.42977 5.59496 5.82273 5.92671 6.43907 6.73202 8.16747 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028347 B = 0.009215 C = 0.008516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.528260 B = 3037.918223 C = 3286.997738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.251 1.251 5 H -0.261 1.261 6 H -0.249 1.249 7 C -1.039 5.039 8 H 0.115 0.885 9 S 2.728 3.272 10 O -1.033 7.033 11 O -1.041 7.041 12 N -1.003 6.003 13 C 0.110 3.890 14 C -0.096 4.096 15 C -0.120 4.120 16 H 0.094 0.906 17 C 0.058 3.942 18 N -0.674 5.674 19 C 0.052 3.948 20 C 0.096 3.904 21 H 0.054 0.946 22 H 0.300 0.700 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.071 0.929 29 H 0.351 0.649 30 H 0.063 0.937 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.794 -9.984 -1.296 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.185 1.185 6 H -0.172 1.172 7 C -1.173 5.173 8 H 0.133 0.867 9 S 2.832 3.168 10 O -1.024 7.024 11 O -1.031 7.031 12 N -0.840 5.840 13 C -0.014 4.014 14 C -0.135 4.135 15 C -0.141 4.141 16 H 0.113 0.887 17 C -0.071 4.071 18 N -0.305 5.305 19 C -0.078 4.078 20 C -0.014 4.014 21 H 0.072 0.928 22 H 0.110 0.890 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.129 0.871 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.089 0.911 29 H 0.168 0.832 30 H 0.081 0.919 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.024 -9.479 -1.275 14.595 hybrid contribution -0.597 0.683 0.100 0.913 sum 10.427 -8.796 -1.176 13.692 Atomic orbital electron populations 1.69978 1.08761 1.32501 1.41351 1.26040 0.95411 1.05366 0.87446 0.85170 0.78846 0.74439 0.80796 1.17477 1.18464 1.17242 1.30913 1.06910 1.12609 1.66822 0.86682 0.99664 0.72305 0.73360 0.71494 1.93299 1.74114 1.88197 1.46747 1.93289 1.74430 1.88322 1.47052 1.57764 1.60103 1.53166 1.12965 1.22840 0.95864 0.96055 0.86593 1.22601 0.97171 0.97947 0.95793 1.23817 0.94279 1.00406 0.95611 0.88733 1.22799 1.01525 0.94879 0.87858 1.63366 1.27344 1.29356 1.10398 1.21753 0.93376 0.99701 0.92995 1.21109 0.95413 0.95726 0.89140 0.92825 0.88982 0.91166 0.91188 0.87114 0.88518 0.87807 0.91078 0.83231 0.91892 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.57 13.19 21.45 0.28 -54.29 16 2 C 0.07 4.01 5.46 84.65 0.46 4.47 16 3 Si 0.99 42.24 29.54 68.60 2.03 44.26 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 7 C -1.04 -59.26 9.74 67.73 0.66 -58.60 16 8 H 0.12 6.00 7.81 -2.91 -0.02 5.98 16 9 S 2.73 153.52 5.27 -56.49 -0.30 153.22 16 10 O -1.03 -63.49 17.39 -128.00 -2.23 -65.71 16 11 O -1.04 -64.54 17.71 -128.00 -2.27 -66.81 16 12 N -1.00 -42.32 3.59 -486.05 -1.74 -44.07 16 13 C 0.11 3.55 7.23 86.91 0.63 4.18 16 14 C -0.10 -2.05 6.48 31.97 0.21 -1.85 16 15 C -0.12 -3.10 3.97 -8.47 -0.03 -3.13 16 16 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 17 C 0.06 1.16 7.10 85.87 0.61 1.77 16 18 N -0.67 -17.14 7.55 -505.54 -3.82 -20.96 16 19 C 0.05 1.80 7.17 84.58 0.61 2.41 16 20 C 0.10 3.37 2.88 46.53 0.13 3.50 16 21 H 0.05 1.72 7.41 -2.39 -0.02 1.70 16 22 H 0.30 16.40 8.31 -92.71 -0.77 15.63 16 23 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.10 1.66 8.01 -2.39 -0.02 1.64 16 27 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 1.14 8.00 -2.38 -0.02 1.12 16 29 H 0.35 7.14 8.94 -89.70 -0.80 6.33 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -78.10 271.06 -4.44 -82.53 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.33 Total: 19.08 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.27 Total: -47.26 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.28 Total: -119.32 kcal Atomic # 8 Polarization: -128.02 SS G_CDS: -4.49 Total: -132.52 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: 153.52 SS G_CDS: -0.30 Total: 153.22 kcal Total: -78.10 -4.44 -82.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214453564.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.169 kcal (2) G-P(sol) polarization free energy of solvation -78.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds