Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47306 * 270.00061 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00350 * 3 2 1 6 6 H 1.48501 * 109.46900 * 150.00035 * 3 2 1 7 7 C 1.38882 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.37165 * 120.00569 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00320 * 179.97438 * 9 7 2 11 11 O 1.21593 * 120.00211 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00111 * 179.97438 * 10 9 7 13 13 C 1.40005 * 120.00226 * 184.61386 * 12 10 9 14 14 C 1.39373 * 119.85522 * 144.89405 * 13 12 10 15 15 C 1.36494 * 120.60219 * 180.02562 * 14 13 12 16 16 C 1.39789 * 119.97862 * 359.97438 * 15 14 13 17 17 N 1.35860 * 133.49021 * 180.02562 * 16 15 14 18 18 C 1.30071 * 109.65666 * 180.02562 * 17 16 15 19 19 N 1.36142 * 110.09028 * 359.97438 * 18 17 16 20 20 H 0.97007 * 126.34737 * 179.97438 * 19 18 17 21 21 C 1.38067 * 107.29795 * 0.02562 * 19 18 17 22 22 C 1.38463 * 119.84932 * 324.65336 * 13 12 10 23 23 H 0.97003 * 119.99378 * 359.97438 * 1 2 3 24 24 H 0.97007 * 119.99375 * 359.97438 * 9 7 2 25 25 H 0.97001 * 120.00181 * 4.60581 * 12 10 9 26 26 H 1.08004 * 119.69802 * 359.97153 * 14 13 12 27 27 H 1.07996 * 120.01364 * 180.02562 * 15 14 13 28 28 H 1.07997 * 124.95125 * 179.97438 * 18 17 16 29 29 H 1.08003 * 120.18292 * 359.91588 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4963 2.0465 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5463 1.4401 0.7000 7 6 2.0092 -1.2027 -0.0005 8 1 1.4692 -2.1381 -0.0005 9 7 3.3808 -1.2028 0.0000 10 6 4.0547 -2.3700 0.0000 11 8 3.4467 -3.4230 0.0000 12 7 5.4024 -2.3701 0.0000 13 6 6.1024 -3.5786 -0.0975 14 6 7.3057 -3.6288 -0.7990 15 6 8.0005 -4.7990 -0.9041 16 6 7.5062 -5.9610 -0.3046 17 7 7.9560 -7.2411 -0.2347 18 6 7.1189 -7.9622 0.4517 19 7 6.0748 -7.1953 0.8701 20 1 5.3174 -7.4937 1.3977 21 6 6.2932 -5.9144 0.4033 22 6 5.5987 -4.7176 0.5076 23 1 -0.4849 0.8401 0.0004 24 1 3.8658 -0.3627 0.0004 25 1 5.8875 -1.5328 0.0674 26 1 7.6915 -2.7337 -1.2643 27 1 8.9321 -4.8269 -1.4496 28 1 7.2353 -9.0156 0.6593 29 1 4.6687 -4.6755 1.0551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264362.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = 55.151307 kcal Electronic energy + Delta-G solvation = -16699.621219 eV Core-core repulsion = 13816.959452 eV Total energy + Delta-G solvation = -2882.661766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.88192 -39.55270 -37.08018 -34.27519 -33.55412 -32.75797 -31.63593 -29.73394 -28.16349 -24.89898 -23.15535 -21.98365 -21.25339 -20.06226 -18.80616 -18.38248 -17.25100 -16.67161 -15.88765 -15.07809 -14.90481 -14.56125 -14.28187 -13.82812 -13.56370 -13.26998 -12.92012 -12.71838 -12.14845 -11.88657 -11.49233 -11.26780 -10.66721 -10.62391 -10.05173 -9.95270 -9.80689 -9.42649 -8.97916 -8.28171 -8.18570 -7.39369 -6.31555 -3.85391 1.19457 1.69096 2.92937 3.00333 3.01699 3.06097 3.13392 3.53125 3.89553 4.08739 4.20742 4.37634 4.82599 5.23190 5.24190 5.28470 5.49382 5.54639 5.63255 5.76230 6.24284 6.38804 6.54523 6.72022 6.81070 7.20063 7.34226 7.44221 7.73973 7.96591 8.20215 8.67644 8.88988 9.38260 9.77222 10.81428 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.050436 B = 0.004984 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.024673 B = 5616.185438 C = 6085.299953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.041 3.959 3 Si 0.881 3.119 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.296 4.296 8 H 0.121 0.879 9 N -0.600 5.600 10 C 0.656 3.344 11 O -0.595 6.595 12 N -0.696 5.696 13 C 0.202 3.798 14 C -0.152 4.152 15 C -0.049 4.049 16 C 0.014 3.986 17 N -0.496 5.496 18 C 0.245 3.755 19 N -0.603 5.603 20 H 0.423 0.577 21 C 0.072 3.928 22 C -0.123 4.123 23 H 0.273 0.727 24 H 0.371 0.629 25 H 0.400 0.600 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.212 0.788 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.809 -7.542 1.780 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.425 4.425 8 H 0.139 0.861 9 N -0.242 5.242 10 C 0.358 3.642 11 O -0.475 6.475 12 N -0.343 5.343 13 C 0.103 3.897 14 C -0.175 4.175 15 C -0.070 4.070 16 C -0.103 4.103 17 N -0.216 5.216 18 C -0.042 4.042 19 N -0.215 5.215 20 H 0.261 0.739 21 C -0.039 4.039 22 C -0.148 4.148 23 H 0.084 0.916 24 H 0.204 0.796 25 H 0.234 0.766 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.228 0.772 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 14.735 -8.486 1.350 17.057 hybrid contribution -0.436 1.827 0.646 1.987 sum 14.299 -6.658 1.996 15.899 Atomic orbital electron populations 1.69631 1.05458 1.27415 1.50025 1.24939 0.95493 0.97809 0.97936 0.86664 0.79633 0.84151 0.78822 1.19652 1.20180 1.19692 1.19272 0.77876 0.96773 1.48553 0.86150 1.41358 1.07456 1.04318 1.71108 1.15663 0.80141 0.85393 0.83038 1.90774 1.66775 1.30132 1.59788 1.42670 1.05883 1.07172 1.78599 1.17028 0.91652 0.85895 0.95147 1.20426 0.96335 0.98588 1.02159 1.19666 0.99531 0.89180 0.98587 1.18983 0.94471 0.92719 1.04160 1.70345 1.28756 1.02406 1.20108 1.25202 0.84544 0.98438 0.96032 1.43140 1.23183 1.07848 1.47363 0.73855 1.18717 0.97905 0.86461 1.00797 1.20085 1.01933 0.89058 1.03682 0.91612 0.79611 0.76604 0.85229 0.85335 0.77182 0.83650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.96 55.49 0.77 -24.83 15 2 C 0.04 1.10 5.50 -17.47 -0.10 1.01 15 3 Si 0.88 19.07 27.74 -169.99 -4.71 14.35 15 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.30 6.52 56.52 0.37 -4.94 15 7 C -0.30 -8.22 10.16 -14.93 -0.15 -8.37 15 8 H 0.12 3.81 7.39 -52.49 -0.39 3.43 15 9 N -0.60 -13.98 5.10 -15.35 -0.08 -14.06 15 10 C 0.66 14.79 8.36 -86.93 -0.73 14.07 15 11 O -0.59 -15.59 13.36 5.28 0.07 -15.52 15 12 N -0.70 -11.99 5.34 -14.18 -0.08 -12.06 15 13 C 0.20 3.38 6.30 -83.62 -0.53 2.86 15 14 C -0.15 -2.11 9.88 -39.79 -0.39 -2.50 15 15 C -0.05 -0.69 10.04 -39.63 -0.40 -1.09 15 16 C 0.01 0.23 7.23 -84.64 -0.61 -0.39 15 17 N -0.50 -7.27 11.27 -12.00 -0.14 -7.40 15 18 C 0.25 2.69 12.97 -89.72 -1.16 1.53 15 19 N -0.60 -7.17 6.24 -11.76 -0.07 -7.25 15 20 H 0.42 3.73 8.96 -40.82 -0.37 3.37 15 21 C 0.07 1.13 7.30 -84.00 -0.61 0.52 15 22 C -0.12 -2.18 8.70 -39.30 -0.34 -2.52 15 23 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 24 H 0.37 7.50 5.78 -40.82 -0.24 7.27 15 25 H 0.40 5.37 8.84 -40.82 -0.36 5.01 15 26 H 0.13 1.41 8.06 -52.48 -0.42 0.98 15 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.21 1.19 8.06 -52.49 -0.42 0.76 15 29 H 0.15 2.89 6.23 -52.48 -0.33 2.56 15 LS Contribution 259.85 15.07 3.92 3.92 Total: -1.00 -34.82 259.85 -7.45 -42.27 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -2.11 Total: 15.47 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: -5.02 Total: 5.10 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 0.41 Total: -65.60 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.07 Total: -15.52 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.82 -7.45 -42.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264362.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.425 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds