Wall clock time and date at job start Mon Mar 30 2020 04:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31474 * 1 3 3 Si 1.86802 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47306 * 270.00061 * 3 2 1 5 5 H 1.48506 * 109.46979 * 30.00350 * 3 2 1 6 6 H 1.48501 * 109.46900 * 150.00035 * 3 2 1 7 7 C 1.38882 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.37165 * 120.00569 * 180.02562 * 7 2 1 10 10 C 1.34771 * 120.00320 * 179.97438 * 9 7 2 11 11 O 1.21593 * 120.00211 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00111 * 179.97438 * 10 9 7 13 13 C 1.40005 * 120.00226 * 184.61386 * 12 10 9 14 14 C 1.39373 * 119.85522 * 144.89405 * 13 12 10 15 15 C 1.36494 * 120.60219 * 180.02562 * 14 13 12 16 16 C 1.39789 * 119.97862 * 359.97438 * 15 14 13 17 17 N 1.35860 * 133.49021 * 180.02562 * 16 15 14 18 18 C 1.30071 * 109.65666 * 180.02562 * 17 16 15 19 19 N 1.36142 * 110.09028 * 359.97438 * 18 17 16 20 20 H 0.97007 * 126.34737 * 179.97438 * 19 18 17 21 21 C 1.38067 * 107.29795 * 0.02562 * 19 18 17 22 22 C 1.38463 * 119.84932 * 324.65336 * 13 12 10 23 23 H 0.97003 * 119.99378 * 359.97438 * 1 2 3 24 24 H 0.97007 * 119.99375 * 359.97438 * 9 7 2 25 25 H 0.97001 * 120.00181 * 4.60581 * 12 10 9 26 26 H 1.08004 * 119.69802 * 359.97153 * 14 13 12 27 27 H 1.07996 * 120.01364 * 180.02562 * 15 14 13 28 28 H 1.07997 * 124.95125 * 179.97438 * 18 17 16 29 29 H 1.08003 * 120.18292 * 359.91588 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4963 2.0465 -1.4001 5 1 1.4463 2.6527 0.7001 6 1 3.5463 1.4401 0.7000 7 6 2.0092 -1.2027 -0.0005 8 1 1.4692 -2.1381 -0.0005 9 7 3.3808 -1.2028 0.0000 10 6 4.0547 -2.3700 0.0000 11 8 3.4467 -3.4230 0.0000 12 7 5.4024 -2.3701 0.0000 13 6 6.1024 -3.5786 -0.0975 14 6 7.3057 -3.6288 -0.7990 15 6 8.0005 -4.7990 -0.9041 16 6 7.5062 -5.9610 -0.3046 17 7 7.9560 -7.2411 -0.2347 18 6 7.1189 -7.9622 0.4517 19 7 6.0748 -7.1953 0.8701 20 1 5.3174 -7.4937 1.3977 21 6 6.2932 -5.9144 0.4033 22 6 5.5987 -4.7176 0.5076 23 1 -0.4849 0.8401 0.0004 24 1 3.8658 -0.3627 0.0004 25 1 5.8875 -1.5328 0.0674 26 1 7.6915 -2.7337 -1.2643 27 1 8.9321 -4.8269 -1.4496 28 1 7.2353 -9.0156 0.6593 29 1 4.6687 -4.6755 1.0551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264362.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:21 Heat of formation + Delta-G solvation = 28.581861 kcal Electronic energy + Delta-G solvation = -16700.773356 eV Core-core repulsion = 13816.959452 eV Total energy + Delta-G solvation = -2883.813904 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.95284 -41.20015 -38.45150 -36.13456 -35.08911 -33.97822 -33.54024 -30.87199 -29.45357 -26.77828 -24.37322 -23.21555 -22.32890 -21.76920 -20.67893 -19.70840 -18.45894 -18.25980 -17.15597 -16.70645 -16.27450 -15.98645 -15.53993 -15.52272 -14.91203 -14.67568 -14.50484 -14.21176 -13.71943 -13.20867 -12.94229 -12.62566 -12.42571 -12.00388 -11.75266 -11.58490 -11.21618 -10.98044 -10.62031 -10.30192 -9.30782 -8.66169 -8.38362 -6.00361 0.05561 0.53610 1.30956 1.38209 1.44746 1.81691 1.91721 2.15506 2.24535 2.28654 2.92509 3.20419 3.43094 3.63392 3.86324 4.26515 4.39557 4.44314 4.54444 4.62378 5.08069 5.23808 5.32395 5.45204 5.52591 5.65319 5.80639 6.03526 6.26365 6.54466 6.78778 6.87962 6.94129 7.47415 7.95111 8.78843 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.050436 B = 0.004984 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.024673 B = 5616.185438 C = 6085.299953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.016 4.016 3 Si 0.965 3.035 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.232 1.232 7 C -0.314 4.314 8 H 0.059 0.941 9 N -0.599 5.599 10 C 0.661 3.339 11 O -0.639 6.639 12 N -0.674 5.674 13 C 0.176 3.824 14 C -0.138 4.138 15 C -0.051 4.051 16 C 0.003 3.997 17 N -0.530 5.530 18 C 0.270 3.730 19 N -0.598 5.598 20 H 0.435 0.565 21 C 0.047 3.953 22 C -0.143 4.143 23 H 0.279 0.721 24 H 0.390 0.610 25 H 0.421 0.579 26 H 0.166 0.834 27 H 0.157 0.843 28 H 0.266 0.734 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.118 -6.864 1.496 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.156 1.156 7 C -0.444 4.444 8 H 0.077 0.923 9 N -0.244 5.244 10 C 0.362 3.638 11 O -0.521 6.521 12 N -0.324 5.324 13 C 0.078 3.922 14 C -0.161 4.161 15 C -0.071 4.071 16 C -0.114 4.114 17 N -0.251 5.251 18 C -0.017 4.017 19 N -0.211 5.211 20 H 0.276 0.724 21 C -0.064 4.064 22 C -0.167 4.167 23 H 0.088 0.912 24 H 0.226 0.774 25 H 0.260 0.740 26 H 0.184 0.816 27 H 0.174 0.826 28 H 0.281 0.719 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.104 -7.827 1.083 19.753 hybrid contribution -1.449 1.327 0.764 2.108 sum 16.654 -6.500 1.846 17.973 Atomic orbital electron populations 1.69813 1.07939 1.29113 1.51015 1.25984 0.96456 1.02487 0.96456 0.85361 0.79410 0.76880 0.79813 1.18270 1.20153 1.15558 1.18825 0.79919 0.95155 1.50475 0.92265 1.40985 1.05878 1.05424 1.72103 1.15909 0.81718 0.84466 0.81724 1.90756 1.68497 1.31780 1.61114 1.42253 1.03767 1.08698 1.77678 1.17326 0.92967 0.85215 0.96663 1.20674 0.94546 0.99998 1.00833 1.20064 1.00357 0.88586 0.98108 1.19441 0.94279 0.93876 1.03851 1.70393 1.30235 1.02156 1.22294 1.26312 0.82537 0.99934 0.92892 1.43258 1.23975 1.06783 1.47074 0.72387 1.18769 0.98369 0.87246 1.02008 1.19950 1.01233 0.90874 1.04675 0.91199 0.77394 0.74044 0.81619 0.82580 0.71887 0.87042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.20 13.96 21.65 0.30 -55.89 15 2 C -0.02 -0.86 5.50 84.90 0.47 -0.39 15 3 Si 0.97 38.35 27.74 68.60 1.90 40.25 15 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 15 6 H -0.23 -7.69 6.52 99.48 0.65 -7.04 15 7 C -0.31 -18.21 10.16 84.01 0.85 -17.36 15 8 H 0.06 4.08 7.39 -2.91 -0.02 4.05 15 9 N -0.60 -28.04 5.10 -320.72 -1.63 -29.68 15 10 C 0.66 30.40 8.36 179.06 1.50 31.89 15 11 O -0.64 -35.42 13.36 -4.01 -0.05 -35.48 15 12 N -0.67 -22.64 5.34 -317.05 -1.69 -24.33 15 13 C 0.18 5.79 6.30 38.16 0.24 6.03 15 14 C -0.14 -3.48 9.88 22.14 0.22 -3.26 15 15 C -0.05 -1.31 10.04 22.24 0.22 -1.08 15 16 C 0.00 0.10 7.23 39.45 0.29 0.38 15 17 N -0.53 -14.30 11.27 -191.88 -2.16 -16.46 15 18 C 0.27 5.16 12.97 180.03 2.34 7.49 15 19 N -0.60 -13.53 6.24 -191.10 -1.19 -14.72 15 20 H 0.44 7.35 8.96 -92.70 -0.83 6.52 15 21 C 0.05 1.49 7.30 38.84 0.28 1.77 15 22 C -0.14 -5.21 8.70 22.45 0.20 -5.01 15 23 H 0.28 15.28 8.31 -92.71 -0.77 14.51 15 24 H 0.39 14.94 5.78 -92.70 -0.54 14.40 15 25 H 0.42 10.24 8.84 -92.71 -0.82 9.42 15 26 H 0.17 2.88 8.06 -2.91 -0.02 2.86 15 27 H 0.16 3.07 8.06 -2.91 -0.02 3.04 15 28 H 0.27 1.74 8.06 -2.91 -0.02 1.72 15 29 H 0.11 4.78 6.23 -2.91 -0.02 4.76 15 Total: -1.00 -81.99 259.85 1.06 -80.92 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -1.00 Total: 34.93 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 6.60 Total: 20.46 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -6.38 Total: -141.09 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.05 Total: -35.48 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 1.90 Total: 40.25 kcal Total: -81.99 1.06 -80.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264362.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.506 kcal (2) G-P(sol) polarization free energy of solvation -81.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds