Wall clock time and date at job start Mon Mar 30 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86804 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46754 * 299.99849 * 3 2 1 6 6 H 1.48492 * 109.47162 * 59.99742 * 3 2 1 7 7 C 1.38881 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00352 * 180.02562 * 7 2 1 9 9 N 1.37170 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00023 * 179.97438 * 9 7 2 11 11 O 1.21589 * 119.99875 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99756 * 179.97438 * 10 9 7 13 13 C 1.39888 * 119.99641 * 185.31994 * 12 10 9 14 14 C 1.39603 * 119.77765 * 213.60300 * 13 12 10 15 15 C 1.36257 * 120.61503 * 180.02562 * 14 13 12 16 16 C 1.40148 * 119.93616 * 0.02562 * 15 14 13 17 17 C 1.41611 * 133.48551 * 180.02562 * 16 15 14 18 18 N 1.30135 * 108.67669 * 179.97438 * 17 16 15 19 19 N 1.40012 * 109.77817 * 359.78076 * 18 17 16 20 20 H 0.97006 * 125.95257 * 180.31048 * 19 18 17 21 21 C 1.37170 * 108.10002 * 0.36221 * 19 18 17 22 22 C 1.38241 * 119.78023 * 33.59025 * 13 12 10 23 23 H 0.97002 * 119.99607 * 0.02562 * 1 2 3 24 24 H 0.96995 * 119.99715 * 359.97438 * 9 7 2 25 25 H 0.96995 * 119.99944 * 5.32875 * 12 10 9 26 26 H 1.08002 * 119.69299 * 0.02603 * 14 13 12 27 27 H 1.08000 * 120.03037 * 180.02562 * 15 14 13 28 28 H 1.07999 * 125.66553 * 359.96245 * 17 16 15 29 29 H 1.07997 * 120.16517 * 359.96650 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 3.7088 1.3464 -0.0006 5 1 1.8900 2.3964 -1.2126 6 1 1.8900 2.3965 1.2124 7 6 2.0092 -1.2027 0.0005 8 1 3.0892 -1.2028 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2131 -3.5578 0.0011 12 7 1.3233 -4.7250 0.0032 13 6 2.0184 -5.9338 0.1155 14 6 1.5438 -7.0702 -0.5420 15 6 2.2070 -8.2564 -0.4439 16 6 3.3767 -8.3423 0.3233 17 6 4.2736 -9.3979 0.6179 18 7 5.2154 -8.9410 1.3910 19 7 5.0025 -7.5804 1.6437 20 1 5.5651 -7.0073 2.1879 21 6 3.8592 -7.1991 0.9887 22 6 3.1708 -5.9950 0.8766 23 1 -0.4850 0.8401 -0.0004 24 1 0.3534 -2.3906 0.0024 25 1 0.3564 -4.7269 -0.0737 26 1 0.6426 -7.0085 -1.1340 27 1 1.8317 -9.1295 -0.9569 28 1 4.1899 -10.4135 0.2604 29 1 3.5343 -5.1130 1.3828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264387.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:23 Heat of formation + Delta-G solvation = 62.231312 kcal Electronic energy + Delta-G solvation = -16636.044368 eV Core-core repulsion = 13753.689614 eV Total energy + Delta-G solvation = -2882.354754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21629 -39.35570 -36.90468 -34.22873 -33.44753 -32.17656 -31.24168 -29.24045 -28.41756 -25.01234 -23.00054 -21.99882 -21.35812 -20.00384 -18.24047 -18.12337 -16.91876 -16.66111 -15.46906 -14.79163 -14.70075 -14.50194 -14.10131 -13.95664 -13.69081 -13.32803 -13.00822 -12.32021 -11.84688 -11.56880 -11.16641 -11.07394 -10.78901 -10.38545 -10.28949 -10.22086 -9.82723 -9.45913 -8.97095 -8.10095 -7.91949 -7.49862 -6.45373 -3.87333 1.14964 1.75267 2.71249 2.86215 3.15918 3.24157 3.30000 3.60079 3.90378 4.24951 4.28557 4.75300 4.86892 5.17460 5.27135 5.37023 5.51661 5.67187 5.74708 5.83815 6.27305 6.44730 6.56176 6.72177 6.81317 7.32124 7.43514 7.50383 7.56300 7.74459 8.22192 8.59190 9.10422 9.48304 9.96271 10.73344 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.048114 B = 0.004765 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.811934 B = 5874.779026 C = 6359.132020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.932 3.068 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.289 4.289 8 H 0.105 0.895 9 N -0.573 5.573 10 C 0.643 3.357 11 O -0.608 6.608 12 N -0.694 5.694 13 C 0.240 3.760 14 C -0.184 4.184 15 C -0.026 4.026 16 C -0.213 4.213 17 C 0.076 3.924 18 N -0.269 5.269 19 N -0.510 5.510 20 H 0.440 0.560 21 C 0.154 3.846 22 C -0.159 4.159 23 H 0.271 0.729 24 H 0.393 0.607 25 H 0.402 0.598 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.188 0.812 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -14.218 0.488 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.181 4.181 3 Si 0.760 3.240 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.419 4.419 8 H 0.123 0.877 9 N -0.213 5.213 10 C 0.345 3.655 11 O -0.490 6.490 12 N -0.340 5.340 13 C 0.139 3.861 14 C -0.206 4.206 15 C -0.047 4.047 16 C -0.221 4.221 17 C -0.120 4.120 18 N -0.084 5.084 19 N -0.225 5.225 20 H 0.284 0.716 21 C 0.036 3.964 22 C -0.186 4.186 23 H 0.081 0.919 24 H 0.226 0.774 25 H 0.236 0.764 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.205 0.795 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.561 -14.170 1.146 14.445 hybrid contribution -1.117 1.480 -0.253 1.871 sum 1.444 -12.690 0.893 12.803 Atomic orbital electron populations 1.69642 1.05830 1.28036 1.51156 1.25223 0.95728 0.99574 0.97587 0.85750 0.79583 0.80997 0.77711 1.19255 1.20749 1.20764 1.19648 0.93130 0.81201 1.47883 0.87720 1.41048 1.08897 1.03019 1.68287 1.15883 0.85769 0.80161 0.83730 1.90768 1.11583 1.85719 1.60918 1.42803 1.09716 1.03747 1.77747 1.17174 0.92089 0.84842 0.92042 1.20425 1.03479 0.92522 1.04153 1.20026 0.92130 0.97095 0.95467 1.18854 1.01128 0.93580 1.08553 1.23801 0.91937 0.99537 0.96684 1.76561 1.22824 0.90992 1.18004 1.46000 1.22534 1.07549 1.46410 0.71592 1.18675 0.88475 0.94976 0.94264 1.20004 0.98197 0.95762 1.04600 0.91938 0.77352 0.76371 0.85493 0.85460 0.79519 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.18 13.05 55.49 0.72 -23.45 15 2 C 0.02 0.53 5.50 -17.47 -0.10 0.43 15 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 7 C -0.29 -7.87 9.68 -14.93 -0.14 -8.01 15 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 15 9 N -0.57 -14.11 5.29 -15.34 -0.08 -14.19 15 10 C 0.64 14.95 8.24 -86.92 -0.72 14.24 15 11 O -0.61 -16.14 13.60 5.29 0.07 -16.07 15 12 N -0.69 -12.45 5.34 -14.21 -0.08 -12.53 15 13 C 0.24 4.09 6.27 -83.67 -0.53 3.57 15 14 C -0.18 -2.49 9.87 -39.79 -0.39 -2.88 15 15 C -0.03 -0.32 10.05 -39.58 -0.40 -0.71 15 16 C -0.21 -3.00 6.17 -106.92 -0.66 -3.66 15 17 C 0.08 0.94 12.05 -16.98 -0.20 0.74 15 18 N -0.27 -3.83 12.57 30.88 0.39 -3.44 15 19 N -0.51 -7.47 7.44 32.35 0.24 -7.23 15 20 H 0.44 5.41 8.96 -182.66 -1.64 3.77 15 21 C 0.15 2.49 7.33 -84.17 -0.62 1.87 15 22 C -0.16 -2.89 8.67 -39.24 -0.34 -3.23 15 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 24 H 0.39 9.15 7.92 -40.82 -0.32 8.83 15 25 H 0.40 5.85 8.83 -40.82 -0.36 5.49 15 26 H 0.13 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 28 H 0.19 1.48 8.06 -52.49 -0.42 1.06 15 29 H 0.14 2.91 6.40 -52.49 -0.34 2.57 15 LS Contribution 263.75 15.07 3.97 3.97 Total: -1.00 -32.19 263.75 -7.31 -39.50 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -3.44 Total: 15.34 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -4.09 Total: 2.35 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 1.20 Total: -60.84 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.07 Total: -16.07 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.19 -7.31 -39.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264387.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.734 kcal (2) G-P(sol) polarization free energy of solvation -32.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds