Wall clock time and date at job start Mon Mar 30 2020 04:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31476 * 1 3 3 Si 1.86804 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46878 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46754 * 299.99849 * 3 2 1 6 6 H 1.48492 * 109.47162 * 59.99742 * 3 2 1 7 7 C 1.38881 * 120.00036 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00352 * 180.02562 * 7 2 1 9 9 N 1.37170 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00023 * 179.97438 * 9 7 2 11 11 O 1.21589 * 119.99875 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99756 * 179.97438 * 10 9 7 13 13 C 1.39888 * 119.99641 * 185.31994 * 12 10 9 14 14 C 1.39603 * 119.77765 * 213.60300 * 13 12 10 15 15 C 1.36257 * 120.61503 * 180.02562 * 14 13 12 16 16 C 1.40148 * 119.93616 * 0.02562 * 15 14 13 17 17 C 1.41611 * 133.48551 * 180.02562 * 16 15 14 18 18 N 1.30135 * 108.67669 * 179.97438 * 17 16 15 19 19 N 1.40012 * 109.77817 * 359.78076 * 18 17 16 20 20 H 0.97006 * 125.95257 * 180.31048 * 19 18 17 21 21 C 1.37170 * 108.10002 * 0.36221 * 19 18 17 22 22 C 1.38241 * 119.78023 * 33.59025 * 13 12 10 23 23 H 0.97002 * 119.99607 * 0.02562 * 1 2 3 24 24 H 0.96995 * 119.99715 * 359.97438 * 9 7 2 25 25 H 0.96995 * 119.99944 * 5.32875 * 12 10 9 26 26 H 1.08002 * 119.69299 * 0.02603 * 14 13 12 27 27 H 1.08000 * 120.03037 * 180.02562 * 15 14 13 28 28 H 1.07999 * 125.66553 * 359.96245 * 17 16 15 29 29 H 1.07997 * 120.16517 * 359.96650 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 3.7088 1.3464 -0.0006 5 1 1.8900 2.3964 -1.2126 6 1 1.8900 2.3965 1.2124 7 6 2.0092 -1.2027 0.0005 8 1 3.0892 -1.2028 0.0010 9 7 1.3233 -2.3907 0.0016 10 6 1.9972 -3.5579 0.0016 11 8 3.2131 -3.5578 0.0011 12 7 1.3233 -4.7250 0.0032 13 6 2.0184 -5.9338 0.1155 14 6 1.5438 -7.0702 -0.5420 15 6 2.2070 -8.2564 -0.4439 16 6 3.3767 -8.3423 0.3233 17 6 4.2736 -9.3979 0.6179 18 7 5.2154 -8.9410 1.3910 19 7 5.0025 -7.5804 1.6437 20 1 5.5651 -7.0073 2.1879 21 6 3.8592 -7.1991 0.9887 22 6 3.1708 -5.9950 0.8766 23 1 -0.4850 0.8401 -0.0004 24 1 0.3534 -2.3906 0.0024 25 1 0.3564 -4.7269 -0.0737 26 1 0.6426 -7.0085 -1.1340 27 1 1.8317 -9.1295 -0.9569 28 1 4.1899 -10.4135 0.2604 29 1 3.5343 -5.1130 1.3828 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264387.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:23 Heat of formation + Delta-G solvation = 38.145229 kcal Electronic energy + Delta-G solvation = -16637.088819 eV Core-core repulsion = 13753.689614 eV Total energy + Delta-G solvation = -2883.399205 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.35276 -41.01832 -38.28869 -36.09012 -35.02589 -33.44960 -33.04470 -30.36228 -29.72950 -26.92322 -24.30603 -23.22026 -22.41571 -21.66583 -20.07565 -19.64202 -18.37022 -18.00834 -16.90807 -16.46604 -16.18743 -15.73304 -15.56625 -15.39760 -15.08792 -14.97451 -14.36768 -13.54384 -13.41590 -13.13849 -12.91742 -12.43136 -12.25643 -12.11485 -11.86123 -11.63318 -11.32145 -11.07126 -10.78529 -10.08218 -9.06136 -8.82494 -8.46460 -5.94907 -0.00483 0.61318 1.38616 1.41768 1.54787 1.62925 1.76482 2.06157 2.27324 2.44789 2.91601 3.26213 3.72524 3.80828 3.96800 4.08880 4.31879 4.43221 4.60742 4.82828 5.05503 5.29938 5.37632 5.44593 5.52972 5.67129 5.77228 6.08205 6.33362 6.39187 6.68593 6.74971 7.09916 7.60679 8.08110 8.72407 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.048114 B = 0.004765 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.811934 B = 5874.779026 C = 6359.132020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.319 4.319 8 H 0.081 0.919 9 N -0.582 5.582 10 C 0.648 3.352 11 O -0.646 6.646 12 N -0.678 5.678 13 C 0.219 3.781 14 C -0.184 4.184 15 C -0.003 4.003 16 C -0.218 4.218 17 C 0.092 3.908 18 N -0.289 5.289 19 N -0.518 5.518 20 H 0.443 0.557 21 C 0.132 3.868 22 C -0.189 4.189 23 H 0.277 0.723 24 H 0.398 0.602 25 H 0.419 0.581 26 H 0.160 0.840 27 H 0.180 0.820 28 H 0.237 0.763 29 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.366 -16.334 -0.559 16.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.449 4.449 8 H 0.099 0.901 9 N -0.222 5.222 10 C 0.349 3.651 11 O -0.531 6.531 12 N -0.327 5.327 13 C 0.119 3.881 14 C -0.205 4.205 15 C -0.024 4.024 16 C -0.226 4.226 17 C -0.103 4.103 18 N -0.103 5.103 19 N -0.233 5.233 20 H 0.288 0.712 21 C 0.014 3.986 22 C -0.215 4.215 23 H 0.086 0.914 24 H 0.232 0.768 25 H 0.257 0.743 26 H 0.178 0.822 27 H 0.197 0.803 28 H 0.253 0.747 29 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.613 -16.334 0.110 16.414 hybrid contribution -0.806 1.948 0.085 2.110 sum 0.808 -14.385 0.195 14.409 Atomic orbital electron populations 1.69702 1.06665 1.29108 1.51055 1.25981 0.96631 1.02127 0.96672 0.84836 0.77926 0.77083 0.78269 1.19867 1.19621 1.19717 1.19577 0.92441 0.82865 1.49987 0.90144 1.40964 1.08956 1.02962 1.69351 1.16080 0.85388 0.81101 0.82547 1.90739 1.13529 1.86620 1.62164 1.42453 1.10460 1.02655 1.77102 1.17569 0.92171 0.85351 0.93025 1.20741 1.04626 0.91381 1.03787 1.20587 0.90309 0.98087 0.93443 1.19295 1.01982 0.93121 1.08243 1.24592 0.90013 1.00973 0.94748 1.76574 1.24029 0.90520 1.19220 1.46139 1.22459 1.08098 1.46653 0.71245 1.18806 0.89221 0.95229 0.95337 1.19817 0.99797 0.95524 1.06356 0.91399 0.76793 0.74320 0.82223 0.80313 0.74672 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.65 0.28 -49.12 15 2 C -0.01 -0.79 5.50 84.90 0.47 -0.32 15 3 Si 1.00 42.85 29.55 68.60 2.03 44.87 15 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.27 -11.17 7.11 99.48 0.71 -10.46 15 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 7 C -0.32 -17.98 9.68 84.01 0.81 -17.17 15 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 15 9 N -0.58 -29.61 5.29 -320.72 -1.70 -31.31 15 10 C 0.65 31.31 8.24 179.05 1.48 32.78 15 11 O -0.65 -36.24 13.60 -4.00 -0.05 -36.30 15 12 N -0.68 -24.62 5.34 -317.13 -1.69 -26.32 15 13 C 0.22 7.41 6.27 38.19 0.24 7.65 15 14 C -0.18 -4.40 9.87 22.14 0.22 -4.19 15 15 C 0.00 -0.07 10.05 22.27 0.22 0.16 15 16 C -0.22 -5.52 6.17 -21.36 -0.13 -5.65 15 17 C 0.09 1.94 12.05 85.78 1.03 2.97 15 18 N -0.29 -7.74 12.57 -56.22 -0.71 -8.45 15 19 N -0.52 -15.35 7.44 -51.55 -0.38 -15.73 15 20 H 0.44 11.59 8.96 -213.37 -1.91 9.68 15 21 C 0.13 4.28 7.33 39.16 0.29 4.57 15 22 C -0.19 -7.14 8.67 22.49 0.19 -6.95 15 23 H 0.28 13.84 8.31 -92.71 -0.77 13.07 15 24 H 0.40 18.99 7.92 -92.71 -0.73 18.25 15 25 H 0.42 11.97 8.83 -92.71 -0.82 11.15 15 26 H 0.16 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.18 1.80 8.06 -2.91 -0.02 1.77 15 28 H 0.24 2.36 8.06 -2.91 -0.02 2.33 15 29 H 0.10 4.64 6.40 -2.91 -0.02 4.62 15 Total: -1.00 -72.65 263.75 0.37 -72.28 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -2.23 Total: 36.22 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 4.82 Total: 13.86 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -4.20 Total: -130.92 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.05 Total: -36.30 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -72.65 0.37 -72.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264387.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.422 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds